Wall clock time and date at job start Tue Mar 31 2020 05:38:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36940 * 119.99448 * 2 1 4 4 H 1.08005 * 119.99826 * 144.56830 * 3 2 1 5 5 C 1.38808 * 120.00688 * 324.56731 * 3 2 1 6 6 N 1.31614 * 120.00381 * 157.65352 * 5 3 2 7 7 Si 1.86809 * 119.99493 * 337.65775 * 5 3 2 8 8 H 1.48504 * 109.46990 * 95.56041 * 7 5 3 9 9 H 1.48504 * 109.46862 * 215.55358 * 7 5 3 10 10 H 1.48493 * 109.47247 * 335.55511 * 7 5 3 11 11 C 1.46491 * 120.00434 * 180.02562 * 2 1 3 12 12 H 1.09000 * 109.50507 * 180.02562 * 11 2 1 13 13 C 1.53041 * 109.50184 * 59.99907 * 11 2 1 14 14 C 1.53035 * 109.54469 * 178.68550 * 13 11 2 15 15 C 1.53190 * 109.31157 * 61.36393 * 14 13 11 16 16 N 1.46932 * 108.77897 * 305.36696 * 15 14 13 17 17 C 1.34778 * 120.63335 * 233.58801 * 16 15 14 18 18 O 1.21278 * 120.00009 * 179.97438 * 17 16 15 19 19 C 1.50699 * 119.99968 * 359.97438 * 17 16 15 20 20 H 1.09000 * 109.53460 * 59.63282 * 19 17 16 21 21 C 1.53876 * 109.64603 * 180.02562 * 19 17 16 22 22 C 1.55048 * 106.62064 * 167.03180 * 21 19 17 23 23 S 1.83286 * 102.74121 * 317.46565 * 22 21 19 24 24 O 1.42108 * 109.34916 * 136.70838 * 23 22 21 25 25 O 1.42097 * 109.35767 * 269.91143 * 23 22 21 26 26 C 1.54168 * 109.64334 * 299.27583 * 19 17 16 27 27 C 1.46925 * 118.73505 * 53.85965 * 16 15 14 28 28 H 1.09003 * 109.46751 * 268.02687 * 1 2 3 29 29 H 1.08999 * 109.47428 * 28.03061 * 1 2 3 30 30 H 1.09002 * 109.46657 * 148.02990 * 1 2 3 31 31 H 0.97000 * 120.00157 * 180.02562 * 6 5 3 32 32 H 1.09001 * 109.45785 * 58.66171 * 13 11 2 33 33 H 1.09007 * 109.44348 * 298.70326 * 13 11 2 34 34 H 1.09002 * 109.49457 * 301.41623 * 14 13 11 35 35 H 1.08994 * 109.52889 * 181.33115 * 14 13 11 36 36 H 1.09005 * 109.58785 * 185.58093 * 15 14 13 37 37 H 1.08999 * 109.70432 * 65.22195 * 15 14 13 38 38 H 1.08997 * 110.02529 * 47.74026 * 21 19 17 39 39 H 1.09001 * 110.06489 * 286.34163 * 21 19 17 40 40 H 1.08995 * 110.79534 * 75.83672 * 22 21 19 41 41 H 1.09004 * 110.78861 * 199.10402 * 22 21 19 42 42 H 1.08997 * 110.31806 * 331.13778 * 26 19 17 43 43 H 1.08998 * 110.32337 * 93.23481 * 26 19 17 44 44 H 1.08998 * 109.58688 * 65.93060 * 27 16 15 45 45 H 1.09006 * 109.58581 * 186.35763 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.0796 1.2727 0.5423 5 6 1.6484 2.2768 -0.6969 6 7 2.0216 3.4955 -0.3686 7 14 0.4441 2.0150 -2.1007 8 1 -0.9446 2.1639 -1.5959 9 1 0.6952 3.0223 -3.1627 10 1 0.6241 0.6511 -2.6595 11 6 2.1976 -1.2686 -0.0006 12 1 3.2693 -1.0700 0.0000 13 6 1.8284 -2.0712 -1.2503 14 6 2.6178 -3.3821 -1.2685 15 6 2.2499 -4.2122 -0.0347 16 7 2.4655 -3.3946 1.1670 17 6 3.2360 -3.8468 2.1761 18 8 3.4066 -3.1622 3.1625 19 6 3.8854 -5.2032 2.0788 20 1 4.5408 -5.2319 1.2083 21 6 4.7039 -5.4775 3.3527 22 6 5.0595 -6.9865 3.3349 23 16 3.4924 -7.7648 2.7891 24 8 3.7767 -8.7712 1.8269 25 8 2.6988 -8.0740 3.9265 26 6 2.7995 -6.2894 1.9460 27 6 1.8204 -2.0772 1.2501 28 1 -0.3633 -0.0354 1.0271 29 1 -0.3634 0.9071 -0.4829 30 1 -0.3633 -0.8718 -0.5442 31 1 1.6710 4.2578 -0.8553 32 1 2.0699 -1.4895 -2.1399 33 1 0.7606 -2.2903 -1.2385 34 1 3.6856 -3.1639 -1.2550 35 1 2.3723 -3.9427 -2.1704 36 1 2.8804 -5.1002 0.0097 37 1 1.2028 -4.5099 -0.0909 38 1 4.1091 -5.2445 4.2358 39 1 5.6150 -4.8792 3.3479 40 1 5.8598 -7.1872 2.6227 41 1 5.3356 -7.3307 4.3317 42 1 1.8814 -5.9690 2.4384 43 1 2.6084 -6.5072 0.8952 44 1 0.7385 -2.2023 1.2951 45 1 2.1675 -1.5559 2.1423 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027482650.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:29 Heat of formation + Delta-G solvation = -68.338836 kcal Electronic energy + Delta-G solvation = -27556.710813 eV Core-core repulsion = 23702.786504 eV Total energy + Delta-G solvation = -3853.924309 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 1.97 seconds Orbital eigenvalues (eV) -40.57630 -37.98002 -37.42896 -36.46522 -36.06370 -35.40141 -32.54913 -31.64722 -30.82310 -29.25523 -26.63164 -26.24112 -25.06057 -23.93257 -22.38281 -21.71800 -19.66333 -19.29761 -18.93943 -17.68320 -17.11926 -16.87115 -16.81567 -16.08115 -15.83185 -15.45500 -15.26413 -14.57808 -14.47184 -14.32565 -13.95252 -13.88120 -13.66788 -13.06291 -13.00349 -12.59477 -12.56153 -12.54174 -12.50545 -12.39897 -12.36707 -12.34408 -12.21381 -11.66761 -11.38896 -11.22657 -11.12013 -10.81266 -10.73099 -10.57298 -10.45536 -10.20737 -10.01018 -9.77326 -9.58675 -8.78583 -8.44985 -6.93919 -6.04472 -3.45741 -0.40709 2.03005 2.46629 2.85293 3.17306 3.25762 3.41202 3.45232 3.57560 3.89089 4.02016 4.14288 4.24539 4.39194 4.45900 4.56542 4.70008 4.90959 4.94961 4.99956 5.04349 5.13273 5.20290 5.26608 5.36273 5.44251 5.52024 5.62356 5.66013 5.75080 5.89879 6.00637 6.12347 6.22712 6.27913 6.43898 6.45631 6.64205 6.75031 6.79136 7.37683 7.96176 8.08408 8.31053 8.90027 9.64103 10.01667 11.11016 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.028945 B = 0.002895 C = 0.002776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.120100 B = 9670.668947 C =10082.611527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.108 3.892 2 N -0.602 5.602 3 C -0.271 4.271 4 H 0.081 0.919 5 C 0.034 3.966 6 N -0.899 5.899 7 Si 0.885 3.115 8 H -0.287 1.287 9 H -0.303 1.303 10 H -0.270 1.270 11 C 0.168 3.832 12 H 0.075 0.925 13 C -0.139 4.139 14 C -0.133 4.133 15 C 0.099 3.901 16 N -0.601 5.601 17 C 0.523 3.477 18 O -0.532 6.532 19 C -0.103 4.103 20 H 0.119 0.881 21 C -0.102 4.102 22 C -0.585 4.585 23 S 2.386 3.614 24 O -0.937 6.937 25 O -0.932 6.932 26 C -0.591 4.591 27 C 0.098 3.902 28 H 0.017 0.983 29 H 0.046 0.954 30 H 0.031 0.969 31 H 0.264 0.736 32 H 0.068 0.932 33 H 0.057 0.943 34 H 0.068 0.932 35 H 0.071 0.929 36 H 0.084 0.916 37 H 0.070 0.930 38 H 0.100 0.900 39 H 0.106 0.894 40 H 0.139 0.861 41 H 0.141 0.859 42 H 0.144 0.856 43 H 0.149 0.851 44 H 0.063 0.937 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.734 -22.979 1.935 23.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.325 5.325 3 C -0.400 4.400 4 H 0.098 0.902 5 C -0.166 4.166 6 N -0.540 5.540 7 Si 0.716 3.284 8 H -0.216 1.216 9 H -0.231 1.231 10 H -0.195 1.195 11 C 0.060 3.940 12 H 0.094 0.906 13 C -0.179 4.179 14 C -0.172 4.172 15 C -0.024 4.024 16 N -0.334 5.334 17 C 0.308 3.692 18 O -0.408 6.408 19 C -0.125 4.125 20 H 0.137 0.863 21 C -0.140 4.140 22 C -0.715 4.715 23 S 2.569 3.431 24 O -0.934 6.934 25 O -0.929 6.929 26 C -0.720 4.720 27 C -0.026 4.026 28 H 0.035 0.965 29 H 0.064 0.936 30 H 0.049 0.951 31 H 0.074 0.926 32 H 0.087 0.913 33 H 0.076 0.924 34 H 0.086 0.914 35 H 0.090 0.910 36 H 0.102 0.898 37 H 0.089 0.911 38 H 0.118 0.882 39 H 0.124 0.876 40 H 0.158 0.842 41 H 0.159 0.841 42 H 0.162 0.838 43 H 0.167 0.833 44 H 0.081 0.919 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 3.435 -23.319 2.553 23.709 hybrid contribution -0.542 0.850 -1.188 1.558 sum 2.894 -22.469 1.365 22.695 Atomic orbital electron populations 1.21347 0.84927 0.99072 0.98305 1.44033 1.00474 1.01529 1.86422 1.18813 1.08134 0.86326 1.26694 0.90176 1.25420 0.98231 0.95146 0.97835 1.69868 1.46104 0.97674 1.40365 0.86839 0.80399 0.77568 0.83575 1.21567 1.23133 1.19491 1.20811 0.97086 0.85618 0.90509 0.90649 1.22162 0.99502 0.95184 1.01045 1.21933 1.01327 0.97193 0.96735 1.22009 1.01666 0.93829 0.84895 1.48119 1.48684 1.19116 1.17472 1.20015 0.79027 0.87107 0.83021 1.90744 1.61133 1.58111 1.30854 1.21731 0.95822 0.93079 1.01910 0.86298 1.22053 1.02281 0.92060 0.97646 1.30633 1.20180 1.07577 1.13110 1.09254 0.79391 0.77798 0.76620 1.93628 1.84282 1.53920 1.61540 1.93641 1.67033 1.82867 1.49407 1.30806 1.09217 1.16665 1.15312 1.22485 0.96642 0.81270 1.02159 0.96499 0.93606 0.95075 0.92626 0.91307 0.92442 0.91371 0.91020 0.89779 0.91149 0.88170 0.87589 0.84245 0.84071 0.83811 0.83312 0.91879 0.88710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 32. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.26 8.44 59.85 0.51 2.76 16 2 N -0.60 -13.66 2.41 -173.08 -0.42 -14.08 16 3 C -0.27 -7.43 9.85 -15.06 -0.15 -7.58 16 4 H 0.08 2.39 8.06 -52.48 -0.42 1.96 16 5 C 0.03 0.97 5.31 -17.43 -0.09 0.88 16 6 N -0.90 -27.18 13.97 55.49 0.78 -26.41 16 7 Si 0.89 21.76 24.94 -169.99 -4.24 17.52 16 8 H -0.29 -6.90 6.67 56.52 0.38 -6.53 16 9 H -0.30 -7.61 7.11 56.52 0.40 -7.21 16 10 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 11 C 0.17 3.08 2.76 -67.59 -0.19 2.89 16 12 H 0.08 1.50 7.89 -51.93 -0.41 1.09 16 13 C -0.14 -2.11 5.11 -26.69 -0.14 -2.24 16 14 C -0.13 -1.42 6.08 -26.61 -0.16 -1.58 16 15 C 0.10 0.90 5.50 -3.71 -0.02 0.88 16 16 N -0.60 -7.54 2.97 -172.49 -0.51 -8.05 16 17 C 0.52 6.49 6.94 -10.99 -0.08 6.42 16 18 O -0.53 -8.81 15.21 5.56 0.08 -8.73 16 19 C -0.10 -0.76 2.11 -90.71 -0.19 -0.95 16 20 H 0.12 0.58 7.67 -51.93 -0.40 0.18 16 21 C -0.10 -0.69 5.27 -25.19 -0.13 -0.82 16 22 C -0.58 -2.66 7.29 38.24 0.28 -2.38 16 23 S 2.39 16.22 6.14 -107.50 -0.66 15.56 16 24 O -0.94 -9.19 18.15 -57.71 -1.05 -10.24 16 25 O -0.93 -10.12 18.15 -57.71 -1.05 -11.16 16 26 C -0.59 -3.43 5.62 37.77 0.21 -3.22 16 27 C 0.10 1.59 5.81 -3.48 -0.02 1.57 16 28 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.05 1.05 3.08 -51.93 -0.16 0.89 16 30 H 0.03 0.56 6.46 -51.93 -0.34 0.22 16 31 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 32 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.06 0.85 6.73 -51.93 -0.35 0.50 16 34 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.08 0.50 4.18 -51.93 -0.22 0.28 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.10 0.79 7.72 -51.93 -0.40 0.39 16 39 H 0.11 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.14 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.14 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.14 0.88 7.88 -51.93 -0.41 0.47 16 43 H 0.15 0.53 6.27 -51.93 -0.33 0.20 16 44 H 0.06 0.99 7.53 -51.93 -0.39 0.60 16 45 H 0.09 1.80 7.00 -51.93 -0.36 1.44 16 LS Contribution 352.85 15.07 5.32 5.32 Total: -1.00 -37.65 352.85 -8.64 -46.30 By element: Atomic # 1 Polarization: 4.08 SS G_CDS: -6.72 Total: -2.65 kcal Atomic # 6 Polarization: -3.21 SS G_CDS: -0.17 Total: -3.38 kcal Atomic # 7 Polarization: -48.38 SS G_CDS: -0.15 Total: -48.54 kcal Atomic # 8 Polarization: -28.12 SS G_CDS: -2.01 Total: -30.13 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.24 Total: 17.52 kcal Atomic # 16 Polarization: 16.22 SS G_CDS: -0.66 Total: 15.56 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -37.65 -8.64 -46.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027482650.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.044 kcal (2) G-P(sol) polarization free energy of solvation -37.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.97 seconds