Wall clock time and date at job start Tue Mar 31 2020 05:38:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.36941 * 120.00187 * 2 1 4 4 H 1.07996 * 119.99952 * 198.77151 * 3 2 1 5 5 C 1.38810 * 119.99840 * 18.77200 * 3 2 1 6 6 N 1.31621 * 120.00013 * 12.90286 * 5 3 2 7 7 Si 1.86798 * 120.00024 * 192.90655 * 5 3 2 8 8 H 1.48503 * 109.47004 * 94.97803 * 7 5 3 9 9 H 1.48504 * 109.47065 * 214.97888 * 7 5 3 10 10 H 1.48506 * 109.47113 * 334.97949 * 7 5 3 11 11 C 1.46501 * 120.00182 * 179.97438 * 2 1 3 12 12 H 1.08995 * 109.52551 * 180.08249 * 11 2 1 13 13 C 1.53037 * 109.49518 * 300.16525 * 11 2 1 14 14 C 1.53045 * 109.53985 * 181.31527 * 13 11 2 15 15 C 1.53189 * 109.31238 * 298.63307 * 14 13 11 16 16 N 1.46935 * 108.77417 * 54.63074 * 15 14 13 17 17 C 1.34777 * 120.62597 * 126.41319 * 16 15 14 18 18 O 1.21275 * 120.00436 * 356.08440 * 17 16 15 19 19 C 1.50701 * 119.99483 * 176.08243 * 17 16 15 20 20 H 1.09004 * 110.01546 * 50.18859 * 19 17 16 21 21 C 1.53878 * 110.02263 * 171.56207 * 19 17 16 22 22 C 1.54170 * 108.70201 * 166.47476 * 21 19 17 23 23 S 1.82924 * 105.08638 * 332.09233 * 22 21 19 24 24 O 1.42092 * 109.35377 * 115.52200 * 23 22 21 25 25 O 1.42099 * 109.35265 * 248.72681 * 23 22 21 26 26 C 1.55041 * 110.03304 * 288.80313 * 19 17 16 27 27 C 1.46920 * 118.73926 * 306.39351 * 16 15 14 28 28 H 1.08999 * 109.46997 * 275.50191 * 1 2 3 29 29 H 1.09003 * 109.46797 * 35.50232 * 1 2 3 30 30 H 1.08996 * 109.46972 * 155.49799 * 1 2 3 31 31 H 0.97004 * 119.99811 * 180.02562 * 6 5 3 32 32 H 1.09007 * 109.46187 * 301.33069 * 13 11 2 33 33 H 1.09005 * 109.46499 * 61.29524 * 13 11 2 34 34 H 1.08993 * 109.50051 * 178.68117 * 14 13 11 35 35 H 1.09000 * 109.52200 * 58.59664 * 14 13 11 36 36 H 1.09000 * 109.58936 * 294.85129 * 15 14 13 37 37 H 1.08993 * 109.70609 * 174.48619 * 15 14 13 38 38 H 1.09001 * 109.65088 * 286.32405 * 21 19 17 39 39 H 1.09002 * 109.65041 * 46.75697 * 21 19 17 40 40 H 1.09002 * 110.32215 * 90.99590 * 22 21 19 41 41 H 1.08999 * 110.31968 * 213.08880 * 22 21 19 42 42 H 1.09007 * 110.79081 * 316.55059 * 26 19 17 43 43 H 1.09008 * 110.78589 * 80.00427 * 26 19 17 44 44 H 1.08997 * 109.58699 * 293.82023 * 27 16 15 45 45 H 1.08997 * 109.70211 * 173.46438 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1866 1.2108 -0.3010 5 6 1.5110 2.3561 0.3869 6 7 0.3425 2.2996 0.9900 7 14 2.3099 4.0110 0.0513 8 1 1.7855 4.5644 -1.2230 9 1 1.9980 4.9455 1.1625 10 1 3.7812 3.8385 -0.0522 11 6 2.1975 -1.2687 0.0006 12 1 3.2693 -1.0705 0.0020 13 6 1.8251 -2.0729 1.2482 14 6 2.6144 -3.3840 1.2666 15 6 2.2495 -4.2124 0.0307 16 7 2.4681 -3.3930 -1.1692 17 6 3.2411 -3.8439 -2.1771 18 8 3.8210 -4.9036 -2.0692 19 6 3.3847 -3.0313 -3.4380 20 1 3.6427 -2.0014 -3.1908 21 6 4.4706 -3.6447 -4.3393 22 6 4.3623 -3.0149 -5.7424 23 16 2.6034 -2.5442 -5.9185 24 8 2.5025 -1.1308 -6.0238 25 8 1.9892 -3.3744 -6.8944 26 6 2.0626 -3.0679 -4.2470 27 6 1.8278 -2.0731 -1.2497 28 1 -0.3633 0.0985 1.0229 29 1 -0.3633 0.8366 -0.5968 30 1 -0.3633 -0.9351 -0.4262 31 1 -0.1039 3.1174 1.2600 32 1 2.0645 -1.4925 2.1393 33 1 0.7574 -2.2921 1.2338 34 1 2.3662 -3.9455 2.1671 35 1 3.6824 -3.1664 1.2563 36 1 1.2018 -4.5080 0.0852 37 1 2.8782 -5.1015 -0.0145 38 1 5.4551 -3.4377 -3.9198 39 1 4.3219 -4.7221 -4.4110 40 1 4.9989 -2.1329 -5.8116 41 1 4.6394 -3.7418 -6.5059 42 1 1.6521 -4.0774 -4.2720 43 1 1.3380 -2.3647 -3.8360 44 1 0.7458 -2.1944 -1.2995 45 1 2.1780 -1.5484 -2.1385 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027482681.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:34 Heat of formation + Delta-G solvation = -75.993547 kcal Electronic energy + Delta-G solvation = -27898.510128 eV Core-core repulsion = 24044.253886 eV Total energy + Delta-G solvation = -3854.256242 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.45849 -37.86154 -37.23582 -36.29124 -35.96458 -35.03644 -32.65865 -31.58689 -30.23856 -28.77181 -26.42680 -26.11676 -24.97717 -23.68682 -22.66025 -21.17005 -19.72949 -19.11372 -18.73392 -17.66354 -17.01801 -16.73506 -16.47690 -15.99599 -15.52439 -15.29675 -14.94580 -14.57488 -14.33794 -14.07120 -13.93439 -13.63138 -13.54990 -12.88972 -12.80538 -12.73365 -12.45153 -12.37064 -12.26939 -12.20401 -12.13432 -12.05392 -11.33313 -11.18282 -11.14028 -10.99201 -10.89376 -10.66179 -10.64770 -10.47247 -10.44626 -10.28141 -9.98799 -9.83689 -9.68938 -8.71323 -8.47732 -6.90534 -5.79541 -3.24424 -0.21130 2.20270 2.52571 2.94101 3.35238 3.36174 3.42231 3.42963 3.76201 4.03747 4.20435 4.29024 4.42190 4.50575 4.57672 4.69539 5.08112 5.13023 5.15105 5.18736 5.25189 5.33812 5.38302 5.43874 5.51788 5.57937 5.60122 5.71771 5.79315 5.91384 5.97919 6.12089 6.24265 6.31436 6.57050 6.64338 6.77447 6.86270 7.32913 7.41621 7.64528 7.75068 8.09298 8.29450 9.14897 9.77423 10.23390 11.25001 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.010993 B = 0.004424 C = 0.003488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2546.507199 B = 6327.862194 C = 8026.022522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.594 5.594 3 C -0.258 4.258 4 H 0.071 0.929 5 C 0.003 3.997 6 N -0.907 5.907 7 Si 0.905 3.095 8 H -0.287 1.287 9 H -0.291 1.291 10 H -0.279 1.279 11 C 0.168 3.832 12 H 0.067 0.933 13 C -0.133 4.133 14 C -0.131 4.131 15 C 0.112 3.888 16 N -0.598 5.598 17 C 0.533 3.467 18 O -0.548 6.548 19 C -0.114 4.114 20 H 0.123 0.877 21 C -0.096 4.096 22 C -0.592 4.592 23 S 2.391 3.609 24 O -0.927 6.927 25 O -0.939 6.939 26 C -0.584 4.584 27 C 0.082 3.918 28 H 0.030 0.970 29 H 0.048 0.952 30 H -0.003 1.003 31 H 0.253 0.747 32 H 0.067 0.933 33 H 0.057 0.943 34 H 0.069 0.931 35 H 0.063 0.937 36 H 0.065 0.935 37 H 0.088 0.912 38 H 0.097 0.903 39 H 0.097 0.903 40 H 0.139 0.861 41 H 0.140 0.860 42 H 0.143 0.857 43 H 0.149 0.851 44 H 0.071 0.929 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.183 -13.354 -8.081 16.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.316 5.316 3 C -0.387 4.387 4 H 0.089 0.911 5 C -0.195 4.195 6 N -0.553 5.553 7 Si 0.735 3.265 8 H -0.214 1.214 9 H -0.218 1.218 10 H -0.205 1.205 11 C 0.058 3.942 12 H 0.085 0.915 13 C -0.172 4.172 14 C -0.170 4.170 15 C -0.010 4.010 16 N -0.330 5.330 17 C 0.320 3.680 18 O -0.426 6.426 19 C -0.136 4.136 20 H 0.141 0.859 21 C -0.134 4.134 22 C -0.721 4.721 23 S 2.574 3.426 24 O -0.924 6.924 25 O -0.936 6.936 26 C -0.713 4.713 27 C -0.042 4.042 28 H 0.048 0.952 29 H 0.067 0.933 30 H 0.015 0.985 31 H 0.063 0.937 32 H 0.086 0.914 33 H 0.076 0.924 34 H 0.087 0.913 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.106 0.894 38 H 0.116 0.884 39 H 0.116 0.884 40 H 0.158 0.842 41 H 0.159 0.841 42 H 0.161 0.839 43 H 0.167 0.833 44 H 0.089 0.911 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 4.848 -13.316 -8.722 16.640 hybrid contribution 0.617 0.800 0.704 1.231 sum 5.465 -12.516 -8.019 15.837 Atomic orbital electron populations 1.20832 0.82331 0.95350 0.99698 1.43955 1.01947 0.99914 1.85748 1.19250 0.96061 0.84574 1.38815 0.91123 1.24939 0.97447 0.98333 0.98760 1.70093 1.16392 1.26603 1.42166 0.86228 0.78749 0.83978 0.77524 1.21390 1.21789 1.20465 1.20566 0.96558 0.86307 0.90766 0.91499 1.22131 0.99525 0.94775 1.00815 1.21922 1.01027 0.97275 0.96789 1.21632 1.01237 0.94269 0.83845 1.48139 1.48339 1.18906 1.17636 1.19839 0.78514 0.85768 0.83908 1.90670 1.47040 1.23599 1.81290 1.22010 0.93260 1.03303 0.95035 0.85868 1.21731 1.00172 1.02004 0.89518 1.30522 1.24181 1.11879 1.05543 1.09083 0.79593 0.75953 0.77993 1.93670 1.85399 1.27673 1.85638 1.93614 1.74100 1.69674 1.56182 1.30774 1.05164 1.13872 1.21475 1.22753 0.98010 0.81355 1.02089 0.95209 0.93343 0.98499 0.93704 0.91397 0.92393 0.91266 0.91799 0.91629 0.89363 0.88398 0.88420 0.84228 0.84137 0.83907 0.83343 0.91082 0.89754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.67 8.01 59.84 0.48 4.15 16 2 N -0.59 -13.45 2.82 -173.36 -0.49 -13.94 16 3 C -0.26 -6.61 9.65 -15.06 -0.15 -6.76 16 4 H 0.07 1.77 7.78 -52.49 -0.41 1.36 16 5 C 0.00 0.09 5.12 -17.43 -0.09 0.00 16 6 N -0.91 -25.29 10.45 55.49 0.58 -24.71 16 7 Si 0.91 21.18 29.57 -169.99 -5.03 16.16 16 8 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 9 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 10 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 11 C 0.17 3.01 2.74 -67.81 -0.19 2.83 16 12 H 0.07 1.26 7.84 -51.93 -0.41 0.85 16 13 C -0.13 -2.15 5.14 -26.69 -0.14 -2.29 16 14 C -0.13 -1.70 6.08 -26.61 -0.16 -1.86 16 15 C 0.11 1.41 6.44 -3.71 -0.02 1.38 16 16 N -0.60 -7.96 2.97 -172.77 -0.51 -8.47 16 17 C 0.53 6.93 6.99 -10.98 -0.08 6.86 16 18 O -0.55 -8.35 15.17 5.56 0.08 -8.27 16 19 C -0.11 -1.14 2.02 -90.24 -0.18 -1.32 16 20 H 0.12 1.16 7.00 -51.93 -0.36 0.80 16 21 C -0.10 -0.78 5.33 -25.66 -0.14 -0.92 16 22 C -0.59 -3.92 7.26 37.77 0.27 -3.65 16 23 S 2.39 22.72 6.11 -107.50 -0.66 22.06 16 24 O -0.93 -12.55 18.14 -57.71 -1.05 -13.60 16 25 O -0.94 -11.79 18.15 -57.71 -1.05 -12.83 16 26 C -0.58 -5.22 6.23 38.24 0.24 -4.98 16 27 C 0.08 1.21 4.93 -3.71 -0.02 1.19 16 28 H 0.03 0.74 7.43 -51.93 -0.39 0.35 16 29 H 0.05 1.21 7.07 -51.93 -0.37 0.84 16 30 H 0.00 -0.07 6.36 -51.93 -0.33 -0.40 16 31 H 0.25 6.89 8.31 -40.82 -0.34 6.55 16 32 H 0.07 1.24 8.14 -51.92 -0.42 0.82 16 33 H 0.06 0.95 7.71 -51.93 -0.40 0.55 16 34 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.09 1.12 7.00 -51.93 -0.36 0.75 16 38 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.10 0.81 7.56 -51.93 -0.39 0.42 16 40 H 0.14 0.76 8.14 -51.93 -0.42 0.33 16 41 H 0.14 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.14 1.10 8.10 -51.93 -0.42 0.68 16 43 H 0.15 1.31 6.88 -51.92 -0.36 0.95 16 44 H 0.07 1.05 6.50 -51.93 -0.34 0.71 16 45 H 0.08 1.17 4.96 -51.93 -0.26 0.92 16 LS Contribution 358.16 15.07 5.40 5.40 Total: -1.00 -34.47 358.16 -9.77 -44.24 By element: Atomic # 1 Polarization: 6.23 SS G_CDS: -6.89 Total: -0.65 kcal Atomic # 6 Polarization: -5.20 SS G_CDS: -0.17 Total: -5.37 kcal Atomic # 7 Polarization: -46.70 SS G_CDS: -0.42 Total: -47.13 kcal Atomic # 8 Polarization: -32.69 SS G_CDS: -2.01 Total: -34.70 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.03 Total: 16.16 kcal Atomic # 16 Polarization: 22.72 SS G_CDS: -0.66 Total: 22.06 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -34.47 -9.77 -44.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027482681.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.756 kcal (2) G-P(sol) polarization free energy of solvation -34.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds