Wall clock time and date at job start Tue Mar 31 2020 05:38:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.36934 * 120.00022 * 2 1 4 4 H 1.07993 * 119.99899 * 204.17255 * 3 2 1 5 5 C 1.38813 * 119.99826 * 24.17145 * 3 2 1 6 6 N 1.31617 * 120.00450 * 15.07604 * 5 3 2 7 7 Si 1.86807 * 119.99770 * 195.08032 * 5 3 2 8 8 H 1.48502 * 109.46766 * 359.97438 * 7 5 3 9 9 H 1.48497 * 109.46941 * 119.99794 * 7 5 3 10 10 H 1.48497 * 109.47113 * 239.99850 * 7 5 3 11 11 C 1.46497 * 119.99936 * 179.97438 * 2 1 3 12 12 H 1.09003 * 109.49940 * 180.02562 * 11 2 1 13 13 C 1.53042 * 109.49674 * 60.00141 * 11 2 1 14 14 C 1.53041 * 109.53804 * 178.68051 * 13 11 2 15 15 C 1.53195 * 109.31319 * 61.36728 * 14 13 11 16 16 N 1.46926 * 108.77316 * 305.36628 * 15 14 13 17 17 C 1.34778 * 120.62654 * 233.58023 * 16 15 14 18 18 O 1.21282 * 119.99666 * 185.55774 * 17 16 15 19 19 C 1.50700 * 119.99823 * 5.56428 * 17 16 15 20 20 H 1.09000 * 109.64540 * 45.00760 * 19 17 16 21 21 C 1.53870 * 109.64552 * 284.70211 * 19 17 16 22 22 C 1.55408 * 106.74125 * 193.05955 * 21 19 17 23 23 S 1.83278 * 102.42272 * 42.25630 * 22 21 19 24 24 O 1.42108 * 109.35519 * 223.50412 * 23 22 21 25 25 O 1.42104 * 109.35666 * 90.43193 * 23 22 21 26 26 C 1.54167 * 109.64185 * 165.43269 * 19 17 16 27 27 C 1.46926 * 118.74013 * 53.86041 * 16 15 14 28 28 H 1.08995 * 109.46959 * 274.08435 * 1 2 3 29 29 H 1.08990 * 109.46908 * 34.08498 * 1 2 3 30 30 H 1.08999 * 109.47087 * 154.08905 * 1 2 3 31 31 H 0.96997 * 119.99930 * 179.97438 * 6 5 3 32 32 H 1.09006 * 109.45775 * 58.66231 * 13 11 2 33 33 H 1.08997 * 109.45065 * 298.69605 * 13 11 2 34 34 H 1.08998 * 109.50224 * 301.41494 * 14 13 11 35 35 H 1.09007 * 109.49486 * 181.31734 * 14 13 11 36 36 H 1.08998 * 109.58589 * 185.57587 * 15 14 13 37 37 H 1.09006 * 109.70243 * 65.21761 * 15 14 13 38 38 H 1.08998 * 110.03414 * 312.26556 * 21 19 17 39 39 H 1.08999 * 110.02634 * 73.68306 * 21 19 17 40 40 H 1.09001 * 110.75859 * 284.07669 * 22 21 19 41 41 H 1.09000 * 110.95550 * 160.52653 * 22 21 19 42 42 H 1.08995 * 110.32206 * 28.85634 * 26 19 17 43 43 H 1.09000 * 110.40399 * 266.70523 * 26 19 17 44 44 H 1.08993 * 109.58498 * 65.92603 * 27 16 15 45 45 H 1.08997 * 109.58453 * 186.35207 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1587 1.2269 -0.3830 5 6 1.5469 2.3353 0.4923 6 7 0.4549 2.2452 1.2214 7 14 2.2856 4.0102 0.1196 8 1 3.5033 3.8399 -0.7131 9 1 1.2941 4.8360 -0.6154 10 1 2.6468 4.6860 1.3916 11 6 2.1975 -1.2687 0.0006 12 1 3.2693 -1.0701 0.0009 13 6 1.8283 -2.0723 -1.2485 14 6 2.6176 -3.3833 -1.2656 15 6 2.2497 -4.2124 -0.0310 16 7 2.4653 -3.3937 1.1698 17 6 3.2357 -3.8452 2.1794 18 8 3.3251 -3.2063 3.2064 19 6 3.9860 -5.1438 2.0320 20 1 4.4666 -5.1804 1.0543 21 6 3.0088 -6.3244 2.1697 22 6 3.8739 -7.6035 2.3447 23 16 5.1778 -7.0421 3.5039 24 8 6.4394 -7.5260 3.0638 25 8 4.7551 -7.2804 4.8395 26 6 5.0536 -5.2540 3.1387 27 6 1.8202 -2.0762 1.2518 28 1 -0.3633 0.0732 1.0250 29 1 -0.3633 0.8511 -0.5759 30 1 -0.3633 -0.9243 -0.4491 31 1 0.0340 3.0484 1.5657 32 1 2.0699 -1.4913 -2.1386 33 1 0.7606 -2.2914 -1.2366 34 1 3.6855 -3.1652 -1.2523 35 1 2.3716 -3.9443 -2.1672 36 1 2.8802 -5.1003 0.0140 37 1 1.2026 -4.5101 -0.0870 38 1 2.3739 -6.1834 3.0444 39 1 2.3956 -6.4080 1.2725 40 1 4.3080 -7.9095 1.3928 41 1 3.2893 -8.4126 2.7824 42 1 4.7360 -4.7075 4.0267 43 1 6.0107 -4.8730 2.7827 44 1 0.7384 -2.2013 1.2970 45 1 2.1673 -1.5543 2.1436 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027482682.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:37 Heat of formation + Delta-G solvation = -76.620860 kcal Electronic energy + Delta-G solvation = -27441.384120 eV Core-core repulsion = 23587.100676 eV Total energy + Delta-G solvation = -3854.283445 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 2.15 seconds Orbital eigenvalues (eV) -40.46107 -37.81938 -37.31505 -36.38148 -36.03746 -35.15080 -32.42444 -31.37268 -30.44869 -29.02305 -26.51945 -26.04860 -24.96329 -23.57212 -22.50335 -21.66090 -19.58371 -19.13946 -18.77314 -17.87924 -17.15749 -16.80399 -16.19002 -15.99984 -15.72493 -15.26979 -14.87120 -14.54559 -14.28441 -14.12609 -14.04019 -13.75112 -13.66385 -12.96302 -12.80815 -12.67117 -12.58192 -12.42884 -12.38335 -12.29236 -12.20611 -11.98128 -11.54904 -11.27698 -11.16445 -11.02208 -10.87646 -10.74098 -10.64695 -10.50311 -10.41899 -10.23655 -9.95011 -9.83029 -9.68361 -8.65387 -8.44304 -6.80135 -5.78528 -3.25693 -0.29466 2.15357 2.56410 2.99717 3.22447 3.35302 3.42830 3.44694 3.68386 3.86405 4.12734 4.18188 4.36353 4.43926 4.46368 4.60575 4.81012 4.97321 5.04318 5.10909 5.15091 5.19728 5.36171 5.40722 5.42610 5.49344 5.56881 5.65945 5.80297 5.89463 6.01429 6.13814 6.27631 6.40460 6.55014 6.68138 6.83653 6.89062 7.27357 7.49733 7.64098 7.76582 8.18805 8.34941 9.16985 9.79773 10.28821 11.26070 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.022107 B = 0.002868 C = 0.002720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.258514 B = 9759.393406 C =10293.246866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.159 3.841 2 N -0.590 5.590 3 C -0.260 4.260 4 H 0.068 0.932 5 C 0.006 3.994 6 N -0.902 5.902 7 Si 0.904 3.096 8 H -0.278 1.278 9 H -0.289 1.289 10 H -0.290 1.290 11 C 0.168 3.832 12 H 0.065 0.935 13 C -0.134 4.134 14 C -0.132 4.132 15 C 0.100 3.900 16 N -0.602 5.602 17 C 0.520 3.480 18 O -0.530 6.530 19 C -0.106 4.106 20 H 0.116 0.884 21 C -0.117 4.117 22 C -0.587 4.587 23 S 2.389 3.611 24 O -0.940 6.940 25 O -0.934 6.934 26 C -0.580 4.580 27 C 0.097 3.903 28 H 0.030 0.970 29 H 0.040 0.960 30 H 0.001 0.999 31 H 0.253 0.747 32 H 0.065 0.935 33 H 0.059 0.941 34 H 0.065 0.935 35 H 0.070 0.930 36 H 0.081 0.919 37 H 0.071 0.929 38 H 0.096 0.904 39 H 0.107 0.893 40 H 0.140 0.860 41 H 0.141 0.859 42 H 0.157 0.843 43 H 0.143 0.857 44 H 0.063 0.937 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.139 -20.954 -3.435 21.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.311 5.311 3 C -0.390 4.390 4 H 0.086 0.914 5 C -0.193 4.193 6 N -0.546 5.546 7 Si 0.734 3.266 8 H -0.203 1.203 9 H -0.216 1.216 10 H -0.217 1.217 11 C 0.059 3.941 12 H 0.083 0.917 13 C -0.174 4.174 14 C -0.171 4.171 15 C -0.023 4.023 16 N -0.335 5.335 17 C 0.306 3.694 18 O -0.407 6.407 19 C -0.129 4.129 20 H 0.134 0.866 21 C -0.155 4.155 22 C -0.716 4.716 23 S 2.572 3.428 24 O -0.937 6.937 25 O -0.931 6.931 26 C -0.709 4.709 27 C -0.026 4.026 28 H 0.049 0.951 29 H 0.059 0.941 30 H 0.020 0.980 31 H 0.063 0.937 32 H 0.084 0.916 33 H 0.078 0.922 34 H 0.084 0.916 35 H 0.089 0.911 36 H 0.099 0.901 37 H 0.089 0.911 38 H 0.114 0.886 39 H 0.126 0.874 40 H 0.159 0.841 41 H 0.160 0.840 42 H 0.175 0.825 43 H 0.161 0.839 44 H 0.081 0.919 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 4.655 -20.931 -2.179 21.553 hybrid contribution -0.277 1.458 -0.778 1.676 sum 4.379 -19.473 -2.957 20.177 Atomic orbital electron populations 1.20788 0.82722 0.95724 0.99362 1.43936 1.01765 1.00035 1.85364 1.19227 0.99293 0.85399 1.35062 0.91404 1.25052 0.98155 0.98662 0.97454 1.70070 1.21508 1.27467 1.35514 0.86202 0.78472 0.84303 0.77656 1.20274 1.21566 1.21655 1.20734 0.96512 0.86236 0.90616 0.91691 1.22096 0.99663 0.94934 1.00675 1.21921 1.01151 0.97364 0.96676 1.21905 1.01562 0.93677 0.85108 1.48281 1.48619 1.19372 1.17264 1.19979 0.79548 0.86337 0.83577 1.90721 1.63658 1.58310 1.27989 1.21728 0.95382 0.95288 1.00456 0.86567 1.22367 0.97808 0.88684 1.06680 1.30693 1.16944 1.06444 1.17537 1.09092 0.77070 0.79521 0.77087 1.93617 1.38775 1.78229 1.83075 1.93637 1.83059 1.83756 1.32617 1.30545 1.06988 1.24373 1.09033 1.22726 0.96783 0.80563 1.02549 0.95142 0.94077 0.98010 0.93687 0.91614 0.92207 0.91621 0.91121 0.90115 0.91103 0.88584 0.87449 0.84126 0.84044 0.82469 0.83863 0.91890 0.88941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.70 7.94 59.85 0.48 4.17 16 2 N -0.59 -14.06 2.81 -173.09 -0.49 -14.55 16 3 C -0.26 -6.99 9.55 -15.06 -0.14 -7.13 16 4 H 0.07 1.80 7.85 -52.49 -0.41 1.39 16 5 C 0.01 0.16 5.05 -17.43 -0.09 0.08 16 6 N -0.90 -25.91 10.91 55.49 0.61 -25.31 16 7 Si 0.90 21.62 29.58 -169.99 -5.03 16.59 16 8 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 9 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 10 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 11 C 0.17 3.21 2.76 -67.59 -0.19 3.02 16 12 H 0.06 1.32 7.87 -51.93 -0.41 0.91 16 13 C -0.13 -1.99 5.13 -26.69 -0.14 -2.13 16 14 C -0.13 -1.38 6.08 -26.61 -0.16 -1.54 16 15 C 0.10 0.94 5.63 -3.71 -0.02 0.91 16 16 N -0.60 -8.14 2.97 -172.50 -0.51 -8.66 16 17 C 0.52 7.12 6.92 -10.98 -0.08 7.04 16 18 O -0.53 -9.68 14.88 5.56 0.08 -9.60 16 19 C -0.11 -0.89 2.07 -90.71 -0.19 -1.08 16 20 H 0.12 0.66 7.13 -51.93 -0.37 0.29 16 21 C -0.12 -0.70 5.42 -25.00 -0.14 -0.83 16 22 C -0.59 -2.64 7.34 38.44 0.28 -2.36 16 23 S 2.39 19.39 6.09 -107.50 -0.66 18.73 16 24 O -0.94 -10.50 18.15 -57.73 -1.05 -11.54 16 25 O -0.93 -11.34 18.15 -57.73 -1.05 -12.38 16 26 C -0.58 -4.98 6.61 37.77 0.25 -4.73 16 27 C 0.10 1.75 5.79 -3.48 -0.02 1.73 16 28 H 0.03 0.78 7.37 -51.93 -0.38 0.40 16 29 H 0.04 1.04 7.40 -51.93 -0.38 0.65 16 30 H 0.00 0.03 6.46 -51.93 -0.34 -0.31 16 31 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 32 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 33 H 0.06 0.89 6.71 -51.93 -0.35 0.54 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.07 0.58 8.14 -51.92 -0.42 0.16 16 36 H 0.08 0.47 4.56 -51.93 -0.24 0.24 16 37 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.10 0.64 8.11 -51.93 -0.42 0.22 16 39 H 0.11 0.44 6.36 -51.93 -0.33 0.11 16 40 H 0.14 0.34 8.14 -51.93 -0.42 -0.09 16 41 H 0.14 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.16 1.66 6.84 -51.93 -0.36 1.30 16 43 H 0.14 1.02 8.14 -51.93 -0.42 0.60 16 44 H 0.06 1.14 7.53 -51.93 -0.39 0.75 16 45 H 0.09 2.01 7.04 -51.93 -0.37 1.65 16 LS Contribution 357.67 15.07 5.39 5.39 Total: -1.00 -37.09 357.67 -9.68 -46.77 By element: Atomic # 1 Polarization: 4.23 SS G_CDS: -6.84 Total: -2.60 kcal Atomic # 6 Polarization: -2.70 SS G_CDS: -0.15 Total: -2.85 kcal Atomic # 7 Polarization: -48.12 SS G_CDS: -0.39 Total: -48.51 kcal Atomic # 8 Polarization: -31.52 SS G_CDS: -2.01 Total: -33.53 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.03 Total: 16.59 kcal Atomic # 16 Polarization: 19.39 SS G_CDS: -0.66 Total: 18.73 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -37.09 -9.68 -46.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027482682.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.849 kcal (2) G-P(sol) polarization free energy of solvation -37.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.15 seconds