Wall clock time and date at job start Tue Mar 31 2020 05:38:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.36934 * 120.00022 * 2 1 4 4 H 1.07993 * 119.99899 * 204.17255 * 3 2 1 5 5 C 1.38813 * 119.99826 * 24.17145 * 3 2 1 6 6 N 1.31617 * 120.00450 * 15.07604 * 5 3 2 7 7 Si 1.86807 * 119.99770 * 195.08032 * 5 3 2 8 8 H 1.48502 * 109.46766 * 359.97438 * 7 5 3 9 9 H 1.48497 * 109.46941 * 119.99794 * 7 5 3 10 10 H 1.48497 * 109.47113 * 239.99850 * 7 5 3 11 11 C 1.46497 * 119.99936 * 179.97438 * 2 1 3 12 12 H 1.09003 * 109.49940 * 180.02562 * 11 2 1 13 13 C 1.53042 * 109.49674 * 60.00141 * 11 2 1 14 14 C 1.53041 * 109.53804 * 178.68051 * 13 11 2 15 15 C 1.53195 * 109.31319 * 61.36728 * 14 13 11 16 16 N 1.46926 * 108.77316 * 305.36628 * 15 14 13 17 17 C 1.34778 * 120.62654 * 233.58023 * 16 15 14 18 18 O 1.21282 * 119.99666 * 185.55774 * 17 16 15 19 19 C 1.50700 * 119.99823 * 5.56428 * 17 16 15 20 20 H 1.09000 * 109.64540 * 45.00760 * 19 17 16 21 21 C 1.53870 * 109.64552 * 284.70211 * 19 17 16 22 22 C 1.55408 * 106.74125 * 193.05955 * 21 19 17 23 23 S 1.83278 * 102.42272 * 42.25630 * 22 21 19 24 24 O 1.42108 * 109.35519 * 223.50412 * 23 22 21 25 25 O 1.42104 * 109.35666 * 90.43193 * 23 22 21 26 26 C 1.54167 * 109.64185 * 165.43269 * 19 17 16 27 27 C 1.46926 * 118.74013 * 53.86041 * 16 15 14 28 28 H 1.08995 * 109.46959 * 274.08435 * 1 2 3 29 29 H 1.08990 * 109.46908 * 34.08498 * 1 2 3 30 30 H 1.08999 * 109.47087 * 154.08905 * 1 2 3 31 31 H 0.96997 * 119.99930 * 179.97438 * 6 5 3 32 32 H 1.09006 * 109.45775 * 58.66231 * 13 11 2 33 33 H 1.08997 * 109.45065 * 298.69605 * 13 11 2 34 34 H 1.08998 * 109.50224 * 301.41494 * 14 13 11 35 35 H 1.09007 * 109.49486 * 181.31734 * 14 13 11 36 36 H 1.08998 * 109.58589 * 185.57587 * 15 14 13 37 37 H 1.09006 * 109.70243 * 65.21761 * 15 14 13 38 38 H 1.08998 * 110.03414 * 312.26556 * 21 19 17 39 39 H 1.08999 * 110.02634 * 73.68306 * 21 19 17 40 40 H 1.09001 * 110.75859 * 284.07669 * 22 21 19 41 41 H 1.09000 * 110.95550 * 160.52653 * 22 21 19 42 42 H 1.08995 * 110.32206 * 28.85634 * 26 19 17 43 43 H 1.09000 * 110.40399 * 266.70523 * 26 19 17 44 44 H 1.08993 * 109.58498 * 65.92603 * 27 16 15 45 45 H 1.08997 * 109.58453 * 186.35207 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1587 1.2269 -0.3830 5 6 1.5469 2.3353 0.4923 6 7 0.4549 2.2452 1.2214 7 14 2.2856 4.0102 0.1196 8 1 3.5033 3.8399 -0.7131 9 1 1.2941 4.8360 -0.6154 10 1 2.6468 4.6860 1.3916 11 6 2.1975 -1.2687 0.0006 12 1 3.2693 -1.0701 0.0009 13 6 1.8283 -2.0723 -1.2485 14 6 2.6176 -3.3833 -1.2656 15 6 2.2497 -4.2124 -0.0310 16 7 2.4653 -3.3937 1.1698 17 6 3.2357 -3.8452 2.1794 18 8 3.3251 -3.2063 3.2064 19 6 3.9860 -5.1438 2.0320 20 1 4.4666 -5.1804 1.0543 21 6 3.0088 -6.3244 2.1697 22 6 3.8739 -7.6035 2.3447 23 16 5.1778 -7.0421 3.5039 24 8 6.4394 -7.5260 3.0638 25 8 4.7551 -7.2804 4.8395 26 6 5.0536 -5.2540 3.1387 27 6 1.8202 -2.0762 1.2518 28 1 -0.3633 0.0732 1.0250 29 1 -0.3633 0.8511 -0.5759 30 1 -0.3633 -0.9243 -0.4491 31 1 0.0340 3.0484 1.5657 32 1 2.0699 -1.4913 -2.1386 33 1 0.7606 -2.2914 -1.2366 34 1 3.6855 -3.1652 -1.2523 35 1 2.3716 -3.9443 -2.1672 36 1 2.8802 -5.1003 0.0140 37 1 1.2026 -4.5101 -0.0870 38 1 2.3739 -6.1834 3.0444 39 1 2.3956 -6.4080 1.2725 40 1 4.3080 -7.9095 1.3928 41 1 3.2893 -8.4126 2.7824 42 1 4.7360 -4.7075 4.0267 43 1 6.0107 -4.8730 2.7827 44 1 0.7384 -2.2013 1.2970 45 1 2.1673 -1.5543 2.1436 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027482682.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:36 Heat of formation + Delta-G solvation = -105.664448 kcal Electronic energy + Delta-G solvation = -27442.643545 eV Core-core repulsion = 23587.100676 eV Total energy + Delta-G solvation = -3855.542869 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.51645 -39.09850 -38.07742 -37.15910 -36.87885 -36.66431 -33.92428 -32.80695 -31.08888 -30.50465 -28.06177 -27.40897 -25.92507 -25.08332 -23.31491 -22.86428 -20.85271 -19.91883 -19.77576 -18.87945 -18.62427 -17.81713 -17.18717 -16.91198 -16.79359 -16.57834 -16.11148 -15.74163 -15.34076 -15.22701 -14.98233 -14.91474 -14.81412 -14.39225 -13.95548 -13.89143 -13.58447 -13.36204 -13.21660 -13.18895 -13.04133 -12.92564 -12.92065 -12.82881 -12.51526 -12.22827 -12.14478 -12.10540 -12.07050 -11.79539 -11.73637 -11.57421 -11.36948 -11.22630 -10.82170 -10.66846 -9.68783 -8.76232 -7.86988 -5.36227 -0.90813 1.41894 1.43878 1.46768 1.54245 1.63331 1.98475 2.48310 2.62164 3.05312 3.22710 3.26247 3.51601 3.56541 3.63758 3.72024 3.95015 4.05430 4.07089 4.12266 4.20928 4.28162 4.40677 4.56785 4.61328 4.66559 4.71522 4.81791 4.85104 4.87655 4.94262 4.96618 5.05997 5.07998 5.21442 5.23494 5.45303 5.51062 5.58757 5.62528 5.68246 6.30400 6.45836 7.11140 7.14456 7.84271 8.26846 9.15331 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.022107 B = 0.002868 C = 0.002720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.258514 B = 9759.393406 C =10293.246866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.177 3.823 2 N -0.608 5.608 3 C -0.267 4.267 4 H 0.066 0.934 5 C -0.050 4.050 6 N -0.934 5.934 7 Si 0.966 3.034 8 H -0.266 1.266 9 H -0.287 1.287 10 H -0.295 1.295 11 C 0.166 3.834 12 H 0.044 0.956 13 C -0.124 4.124 14 C -0.125 4.125 15 C 0.091 3.909 16 N -0.601 5.601 17 C 0.512 3.488 18 O -0.591 6.591 19 C -0.100 4.100 20 H 0.160 0.840 21 C -0.121 4.121 22 C -0.544 4.544 23 S 2.392 3.608 24 O -0.973 6.973 25 O -0.985 6.985 26 C -0.587 4.587 27 C 0.113 3.887 28 H -0.002 1.002 29 H 0.013 0.987 30 H 0.041 0.959 31 H 0.248 0.752 32 H 0.054 0.946 33 H 0.064 0.936 34 H 0.065 0.935 35 H 0.111 0.889 36 H 0.131 0.869 37 H 0.091 0.909 38 H 0.084 0.916 39 H 0.146 0.854 40 H 0.182 0.818 41 H 0.166 0.834 42 H 0.128 0.872 43 H 0.153 0.847 44 H 0.059 0.941 45 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.317 -24.603 -6.722 25.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.330 5.330 3 C -0.398 4.398 4 H 0.084 0.916 5 C -0.246 4.246 6 N -0.581 5.581 7 Si 0.794 3.206 8 H -0.190 1.190 9 H -0.214 1.214 10 H -0.223 1.223 11 C 0.058 3.942 12 H 0.062 0.938 13 C -0.164 4.164 14 C -0.163 4.163 15 C -0.029 4.029 16 N -0.333 5.333 17 C 0.300 3.700 18 O -0.472 6.472 19 C -0.122 4.122 20 H 0.177 0.823 21 C -0.160 4.160 22 C -0.677 4.677 23 S 2.581 3.419 24 O -0.970 6.970 25 O -0.982 6.982 26 C -0.716 4.716 27 C -0.013 4.013 28 H 0.016 0.984 29 H 0.032 0.968 30 H 0.059 0.941 31 H 0.057 0.943 32 H 0.072 0.928 33 H 0.082 0.918 34 H 0.084 0.916 35 H 0.129 0.871 36 H 0.149 0.851 37 H 0.109 0.891 38 H 0.103 0.897 39 H 0.164 0.836 40 H 0.199 0.801 41 H 0.184 0.816 42 H 0.146 0.854 43 H 0.171 0.829 44 H 0.077 0.923 45 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 4.890 -24.629 -5.481 25.701 hybrid contribution -0.335 2.545 0.219 2.577 sum 4.555 -22.084 -5.261 23.155 Atomic orbital electron populations 1.20492 0.82694 0.96391 0.97251 1.44169 1.02113 1.01103 1.85645 1.19536 0.99288 0.86967 1.33962 0.91612 1.25800 0.98942 1.01960 0.97892 1.70230 1.22993 1.27805 1.37032 0.85227 0.78065 0.80168 0.77122 1.19017 1.21386 1.22270 1.20917 0.94820 0.85176 0.93305 0.93766 1.21939 1.00717 0.96646 0.97057 1.21926 1.00290 0.95087 0.99042 1.22390 1.04157 0.94194 0.82165 1.48302 1.48021 1.17880 1.19069 1.20978 0.78907 0.87668 0.82449 1.90707 1.65416 1.60523 1.30513 1.21896 0.95177 0.92877 1.02238 0.82286 1.22526 0.97508 0.87761 1.08187 1.30505 1.13780 1.06174 1.17250 1.08819 0.77541 0.78646 0.76943 1.93567 1.41752 1.78362 1.83363 1.93569 1.83798 1.84174 1.36669 1.30544 1.07779 1.24992 1.08317 1.22075 0.96556 0.83035 0.99588 0.98356 0.96790 0.94089 0.94256 0.92767 0.91783 0.91604 0.87060 0.85094 0.89065 0.89687 0.83632 0.80061 0.81585 0.85392 0.82928 0.92251 0.94183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.47 7.94 127.77 1.01 9.48 16 2 N -0.61 -29.88 2.81 -701.54 -1.97 -31.85 16 3 C -0.27 -14.82 9.55 84.03 0.80 -14.02 16 4 H 0.07 3.59 7.85 -2.91 -0.02 3.56 16 5 C -0.05 -2.86 5.05 84.86 0.43 -2.43 16 6 N -0.93 -56.16 10.91 21.65 0.24 -55.92 16 7 Si 0.97 45.74 29.58 68.60 2.03 47.77 16 8 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 9 H -0.29 -13.41 7.11 99.48 0.71 -12.71 16 10 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 11 C 0.17 6.36 2.76 45.22 0.12 6.48 16 12 H 0.04 1.85 7.87 -2.39 -0.02 1.83 16 13 C -0.12 -3.39 5.13 30.62 0.16 -3.23 16 14 C -0.13 -1.96 6.08 30.67 0.19 -1.77 16 15 C 0.09 1.18 5.63 86.36 0.49 1.67 16 16 N -0.60 -15.08 2.97 -818.06 -2.43 -17.51 16 17 C 0.51 13.51 6.92 87.66 0.61 14.12 16 18 O -0.59 -22.87 14.88 -3.03 -0.05 -22.91 16 19 C -0.10 -1.33 2.07 -10.85 -0.02 -1.35 16 20 H 0.16 0.78 7.13 -2.39 -0.02 0.76 16 21 C -0.12 -0.80 5.42 31.72 0.17 -0.62 16 22 C -0.54 -1.71 7.34 72.81 0.53 -1.18 16 23 S 2.39 35.09 6.09 -56.49 -0.34 34.74 16 24 O -0.97 -20.28 18.15 -127.47 -2.31 -22.60 16 25 O -0.98 -24.21 18.15 -127.47 -2.31 -26.52 16 26 C -0.59 -9.68 6.61 72.38 0.48 -9.20 16 27 C 0.11 4.15 5.79 86.51 0.50 4.66 16 28 H 0.00 -0.10 7.37 -2.39 -0.02 -0.12 16 29 H 0.01 0.71 7.40 -2.39 -0.02 0.69 16 30 H 0.04 1.60 6.46 -2.39 -0.02 1.58 16 31 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 32 H 0.05 1.61 8.14 -2.38 -0.02 1.59 16 33 H 0.06 1.70 6.71 -2.39 -0.02 1.68 16 34 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.11 1.01 8.14 -2.38 -0.02 0.99 16 36 H 0.13 0.43 4.56 -2.39 -0.01 0.42 16 37 H 0.09 0.93 8.14 -2.38 -0.02 0.91 16 38 H 0.08 0.84 8.11 -2.39 -0.02 0.82 16 39 H 0.15 -0.02 6.36 -2.39 -0.02 -0.03 16 40 H 0.18 -0.66 8.14 -2.39 -0.02 -0.68 16 41 H 0.17 0.00 8.14 -2.39 -0.02 -0.02 16 42 H 0.13 2.96 6.84 -2.39 -0.02 2.95 16 43 H 0.15 2.09 8.14 -2.39 -0.02 2.07 16 44 H 0.06 2.19 7.53 -2.39 -0.02 2.18 16 45 H 0.04 1.88 7.04 -2.39 -0.02 1.86 16 Total: -1.00 -91.07 357.67 -0.68 -91.76 By element: Atomic # 1 Polarization: -0.54 SS G_CDS: 0.99 Total: 0.45 kcal Atomic # 6 Polarization: -2.87 SS G_CDS: 5.47 Total: 2.60 kcal Atomic # 7 Polarization: -101.12 SS G_CDS: -4.16 Total: -105.28 kcal Atomic # 8 Polarization: -67.36 SS G_CDS: -4.67 Total: -72.03 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.77 kcal Atomic # 16 Polarization: 35.09 SS G_CDS: -0.34 Total: 34.74 kcal Total: -91.07 -0.68 -91.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027482682.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.909 kcal (2) G-P(sol) polarization free energy of solvation -91.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds