Wall clock time and date at job start Tue Mar 31 2020 05:33:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34774 * 119.99970 * 2 1 4 4 O 1.21278 * 120.00029 * 180.02562 * 3 2 1 5 5 C 1.50701 * 120.00173 * 0.02562 * 3 2 1 6 6 C 1.52994 * 109.47459 * 179.97438 * 5 3 2 7 7 H 1.08999 * 110.01307 * 306.38004 * 6 5 3 8 8 C 1.53873 * 110.03246 * 184.99892 * 6 5 3 9 9 C 1.54161 * 108.70784 * 193.53080 * 8 6 5 10 10 S 1.82915 * 105.08684 * 27.90564 * 9 8 6 11 11 O 1.42105 * 109.35415 * 111.27793 * 10 9 8 12 12 O 1.42094 * 109.35722 * 244.34823 * 10 9 8 13 13 C 1.55409 * 110.04342 * 67.65029 * 6 5 3 14 14 C 1.46500 * 119.99771 * 180.02562 * 2 1 3 15 15 H 1.09007 * 110.88517 * 183.88102 * 14 2 1 16 16 C 1.55150 * 111.00675 * 59.99675 * 14 2 1 17 17 C 1.54323 * 102.94476 * 277.42537 * 16 14 2 18 18 N 1.47030 * 107.26997 * 337.80798 * 17 16 14 19 19 C 1.36936 * 125.64740 * 178.98186 * 18 17 16 20 20 H 1.08000 * 119.99615 * 179.97438 * 19 18 17 21 21 C 1.38809 * 120.00192 * 359.97438 * 19 18 17 22 22 N 1.31624 * 119.99994 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 120.00102 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.46792 * 359.97438 * 23 21 19 25 25 H 1.48502 * 109.46898 * 119.99921 * 23 21 19 26 26 H 1.48492 * 109.46858 * 239.99674 * 23 21 19 27 27 C 1.47423 * 108.70134 * 358.94092 * 18 17 16 28 28 H 1.08996 * 109.47264 * 90.00084 * 1 2 3 29 29 H 1.09009 * 109.46881 * 209.99933 * 1 2 3 30 30 H 1.08997 * 109.46909 * 329.99662 * 1 2 3 31 31 H 1.09001 * 109.47398 * 59.99423 * 5 3 2 32 32 H 1.09005 * 109.46579 * 299.99810 * 5 3 2 33 33 H 1.08999 * 109.64469 * 73.66911 * 8 6 5 34 34 H 1.09009 * 109.53380 * 313.31473 * 8 6 5 35 35 H 1.09004 * 110.31636 * 269.00471 * 9 8 6 36 36 H 1.08997 * 110.32172 * 146.80967 * 9 8 6 37 37 H 1.09003 * 110.76076 * 43.45428 * 13 6 5 38 38 H 1.09002 * 110.95933 * 279.88999 * 13 6 5 39 39 H 1.09003 * 110.72057 * 35.79113 * 16 14 2 40 40 H 1.09002 * 110.72048 * 159.06519 * 16 14 2 41 41 H 1.09004 * 109.88176 * 97.22131 * 17 16 14 42 42 H 1.08996 * 109.88459 * 218.23705 * 17 16 14 43 43 H 0.96998 * 120.00084 * 180.02562 * 22 21 19 44 44 H 1.08999 * 110.36777 * 265.29030 * 27 18 17 45 45 H 1.09003 * 110.36611 * 142.96880 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1672 -0.0005 5 6 1.3854 2.4723 0.0006 6 6 2.3796 3.6352 0.0011 7 1 3.0837 3.5237 0.8256 8 6 1.6275 4.9716 0.1277 9 6 2.5980 6.1196 -0.2140 10 16 3.8145 5.3871 -1.3671 11 8 3.6356 5.9491 -2.6600 12 8 5.1008 5.3966 -0.7632 13 6 3.1477 3.6799 -1.3492 14 6 2.1975 -1.2688 -0.0006 15 1 3.2718 -1.0973 0.0684 16 6 1.8483 -2.1120 -1.2552 17 6 0.5311 -2.8062 -0.8496 18 7 0.4794 -2.8198 0.6197 19 6 -0.5403 -3.3306 1.3777 20 1 -0.4832 -3.2928 2.4555 21 6 -1.6473 -3.8969 0.7607 22 7 -1.7171 -3.9425 -0.5529 23 14 -3.0379 -4.5944 1.7947 24 1 -2.7186 -4.4219 3.2347 25 1 -4.2987 -3.8768 1.4773 26 1 -3.2016 -6.0393 1.4940 27 6 1.7075 -2.1933 1.1418 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3633 -0.8901 0.5139 30 1 -0.3633 0.8899 0.5139 31 1 0.7590 2.5299 0.8908 32 1 0.7585 2.5302 -0.8892 33 1 1.2625 5.0915 1.1477 34 1 0.7867 4.9838 -0.5661 35 1 3.0972 6.4742 0.6878 36 1 2.0627 6.9367 -0.6975 37 1 2.4675 3.5216 -2.1861 38 1 3.9559 2.9487 -1.3624 39 1 1.6943 -1.4687 -2.1216 40 1 2.6270 -2.8484 -1.4539 41 1 -0.3184 -2.2495 -1.2453 42 1 0.5165 -3.8265 -1.2328 43 1 -2.4908 -4.3380 -0.9840 44 1 2.4569 -2.9534 1.3624 45 1 1.4851 -1.6083 2.0343 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033248826.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:06 Heat of formation + Delta-G solvation = -72.204985 kcal Electronic energy + Delta-G solvation = -27257.586861 eV Core-core repulsion = 23403.494903 eV Total energy + Delta-G solvation = -3854.091958 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.10368 -37.99733 -37.21714 -36.68851 -36.15439 -34.32158 -32.36049 -31.21644 -29.48104 -28.51312 -27.71132 -26.02021 -24.98086 -24.18839 -21.55750 -20.30868 -20.14764 -19.06808 -18.56740 -17.35182 -17.02568 -16.95570 -16.52364 -15.96053 -15.72508 -15.34906 -14.81437 -14.73584 -14.38564 -14.17888 -13.85715 -13.43525 -13.27905 -12.84696 -12.59052 -12.36201 -12.34218 -12.24513 -12.15557 -12.07065 -11.99244 -11.76180 -11.70424 -11.60715 -11.17781 -11.01501 -10.98702 -10.90015 -10.80331 -10.46478 -10.31861 -10.18750 -9.99444 -9.74602 -9.43773 -8.78371 -8.25437 -6.91099 -5.83499 -3.18204 -0.17579 2.31199 2.79139 3.20434 3.31133 3.38145 3.38503 3.39871 3.74150 4.03784 4.23881 4.25678 4.39265 4.50025 4.59476 4.81744 4.97504 5.16754 5.20540 5.29400 5.30759 5.34506 5.37182 5.39278 5.46169 5.63496 5.68094 5.72551 5.78206 5.82851 6.04280 6.15717 6.28432 6.44176 6.47660 6.55980 6.72442 7.00831 7.46012 7.50919 7.71760 7.76583 8.12257 8.38762 9.09657 9.69125 10.34365 11.27278 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.026931 B = 0.002628 C = 0.002537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.443415 B =10650.243920 C =11032.047008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 N -0.587 5.587 3 C 0.508 3.492 4 O -0.554 6.554 5 C -0.126 4.126 6 C -0.074 4.074 7 H 0.104 0.896 8 C -0.112 4.112 9 C -0.594 4.594 10 S 2.383 3.617 11 O -0.945 6.945 12 O -0.938 6.938 13 C -0.576 4.576 14 C 0.122 3.878 15 H 0.100 0.900 16 C -0.155 4.155 17 C 0.174 3.826 18 N -0.603 5.603 19 C -0.233 4.233 20 H 0.078 0.922 21 C -0.005 4.005 22 N -0.918 5.918 23 Si 0.910 3.090 24 H -0.280 1.280 25 H -0.290 1.290 26 H -0.291 1.291 27 C 0.125 3.875 28 H 0.050 0.950 29 H 0.124 0.876 30 H 0.054 0.946 31 H 0.101 0.899 32 H 0.099 0.901 33 H 0.094 0.906 34 H 0.087 0.913 35 H 0.136 0.864 36 H 0.137 0.863 37 H 0.135 0.865 38 H 0.152 0.848 39 H 0.061 0.939 40 H 0.067 0.933 41 H 0.051 0.949 42 H 0.042 0.958 43 H 0.252 0.748 44 H 0.031 0.969 45 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.403 17.528 0.042 18.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 N -0.317 5.317 3 C 0.296 3.704 4 O -0.434 6.434 5 C -0.167 4.167 6 C -0.094 4.094 7 H 0.122 0.878 8 C -0.150 4.150 9 C -0.723 4.723 10 S 2.567 3.433 11 O -0.942 6.942 12 O -0.935 6.935 13 C -0.706 4.706 14 C 0.018 3.982 15 H 0.118 0.882 16 C -0.195 4.195 17 C 0.050 3.950 18 N -0.330 5.330 19 C -0.361 4.361 20 H 0.096 0.904 21 C -0.201 4.201 22 N -0.566 5.566 23 Si 0.741 3.259 24 H -0.205 1.205 25 H -0.217 1.217 26 H -0.218 1.218 27 C -0.002 4.002 28 H 0.069 0.931 29 H 0.143 0.857 30 H 0.073 0.927 31 H 0.119 0.881 32 H 0.117 0.883 33 H 0.113 0.887 34 H 0.106 0.894 35 H 0.154 0.846 36 H 0.155 0.845 37 H 0.153 0.847 38 H 0.170 0.830 39 H 0.080 0.920 40 H 0.086 0.914 41 H 0.069 0.931 42 H 0.060 0.940 43 H 0.063 0.937 44 H 0.048 0.952 45 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 5.594 17.825 -0.480 18.688 hybrid contribution -1.634 -0.870 0.822 2.026 sum 3.959 16.955 0.342 17.414 Atomic orbital electron populations 1.22300 0.78416 1.05458 1.02283 1.47728 1.07718 1.05207 1.71092 1.20492 0.87983 0.85438 0.76480 1.90634 1.13915 1.87473 1.51338 1.21619 0.98379 0.91549 1.05127 1.21693 0.97417 0.94135 0.96151 0.87770 1.21997 0.97948 0.89856 1.05198 1.30483 1.15720 1.08902 1.17185 1.09220 0.77415 0.80008 0.76657 1.93603 1.87109 1.76465 1.37065 1.93622 1.35755 1.86008 1.78121 1.30787 1.12789 1.22252 1.04804 1.22256 0.96226 0.82599 0.97144 0.88246 1.23245 1.00898 0.98682 0.96648 1.21226 0.91563 0.98500 0.83732 1.44618 1.17300 1.69193 1.01857 1.19075 0.95099 1.32085 0.89798 0.90379 1.24796 0.98543 1.00979 0.95823 1.69977 1.29989 1.49732 1.06854 0.86071 0.82045 0.78617 0.79160 1.20528 1.21724 1.21762 1.21893 0.90128 0.93506 0.94650 0.93110 0.85748 0.92711 0.88051 0.88296 0.88709 0.89441 0.84597 0.84503 0.84693 0.83018 0.91996 0.91447 0.93121 0.93991 0.93714 0.95150 0.93796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.88 8.50 59.85 0.51 1.39 16 2 N -0.59 -9.10 2.91 -171.48 -0.50 -9.60 16 3 C 0.51 7.14 7.46 -10.99 -0.08 7.05 16 4 O -0.55 -9.22 13.82 5.56 0.08 -9.14 16 5 C -0.13 -1.16 3.74 -27.89 -0.10 -1.26 16 6 C -0.07 -0.59 2.21 -88.89 -0.20 -0.79 16 7 H 0.10 0.91 7.92 -51.93 -0.41 0.50 16 8 C -0.11 -0.57 5.76 -25.67 -0.15 -0.72 16 9 C -0.59 -3.12 7.26 37.76 0.27 -2.85 16 10 S 2.38 21.18 6.09 -107.50 -0.66 20.52 16 11 O -0.95 -11.53 18.15 -57.73 -1.05 -12.58 16 12 O -0.94 -12.13 18.14 -57.73 -1.05 -13.18 16 13 C -0.58 -5.01 6.12 38.44 0.24 -4.77 16 14 C 0.12 2.11 3.66 -65.78 -0.24 1.87 16 15 H 0.10 1.71 7.02 -51.92 -0.36 1.35 16 16 C -0.16 -2.78 6.48 -24.90 -0.16 -2.95 16 17 C 0.17 3.86 4.33 -3.06 -0.01 3.85 16 18 N -0.60 -13.85 1.87 -170.07 -0.32 -14.16 16 19 C -0.23 -5.91 9.79 -15.06 -0.15 -6.06 16 20 H 0.08 1.95 7.83 -52.49 -0.41 1.54 16 21 C 0.00 -0.12 5.49 -17.43 -0.10 -0.22 16 22 N -0.92 -24.96 10.31 55.49 0.57 -24.39 16 23 Si 0.91 20.74 29.55 -169.99 -5.02 15.71 16 24 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 25 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 26 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 27 C 0.13 2.43 6.40 -2.53 -0.02 2.41 16 28 H 0.05 0.77 7.90 -51.93 -0.41 0.36 16 29 H 0.12 2.42 4.74 -51.92 -0.25 2.18 16 30 H 0.05 0.65 6.44 -51.93 -0.33 0.31 16 31 H 0.10 0.77 7.40 -51.93 -0.38 0.38 16 32 H 0.10 0.75 8.06 -51.93 -0.42 0.34 16 33 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 34 H 0.09 0.33 8.10 -51.92 -0.42 -0.09 16 35 H 0.14 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.14 0.52 8.14 -51.93 -0.42 0.09 16 37 H 0.13 0.96 8.07 -51.93 -0.42 0.54 16 38 H 0.15 1.62 6.94 -51.93 -0.36 1.25 16 39 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 41 H 0.05 1.21 6.35 -51.93 -0.33 0.88 16 42 H 0.04 1.06 7.50 -51.93 -0.39 0.67 16 43 H 0.25 6.74 8.31 -40.82 -0.34 6.40 16 44 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 45 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 LS Contribution 358.94 15.07 5.41 5.41 Total: -1.00 -34.44 358.94 -9.71 -44.15 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: -6.99 Total: 0.30 kcal Atomic # 6 Polarization: -2.85 SS G_CDS: -0.19 Total: -3.04 kcal Atomic # 7 Polarization: -47.91 SS G_CDS: -0.25 Total: -48.16 kcal Atomic # 8 Polarization: -32.89 SS G_CDS: -2.02 Total: -34.90 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.71 kcal Atomic # 16 Polarization: 21.18 SS G_CDS: -0.66 Total: 20.52 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -34.44 -9.71 -44.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033248826.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.054 kcal (2) G-P(sol) polarization free energy of solvation -34.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds