Wall clock time and date at job start Tue Mar 31 2020 05:33:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34779 * 119.99776 * 2 1 4 4 O 1.21282 * 120.00134 * 179.97438 * 3 2 1 5 5 C 1.50701 * 120.00101 * 0.02562 * 3 2 1 6 6 C 1.52993 * 109.47096 * 179.97438 * 5 3 2 7 7 H 1.09004 * 109.53431 * 305.35702 * 6 5 3 8 8 C 1.54017 * 109.75500 * 65.74850 * 6 5 3 9 9 C 1.55045 * 106.70283 * 166.91804 * 8 6 5 10 10 S 1.83283 * 102.56610 * 317.61720 * 9 8 6 11 11 O 1.42104 * 109.35145 * 269.81142 * 10 9 8 12 12 O 1.42098 * 109.47601 * 136.64644 * 10 9 8 13 13 C 1.54169 * 109.64835 * 184.99931 * 6 5 3 14 14 C 1.46494 * 119.99911 * 180.02562 * 2 1 3 15 15 H 1.09006 * 110.88487 * 183.87938 * 14 2 1 16 16 C 1.55156 * 111.00587 * 60.00216 * 14 2 1 17 17 C 1.54330 * 102.94131 * 277.42610 * 16 14 2 18 18 N 1.47022 * 107.26570 * 337.80612 * 17 16 14 19 19 C 1.36936 * 125.64398 * 178.98750 * 18 17 16 20 20 H 1.08003 * 120.00133 * 179.97438 * 19 18 17 21 21 C 1.38817 * 120.00401 * 359.97382 * 19 18 17 22 22 N 1.31618 * 119.99637 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00330 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.46950 * 359.97438 * 23 21 19 25 25 H 1.48494 * 109.47297 * 120.00254 * 23 21 19 26 26 H 1.48500 * 109.47034 * 240.00054 * 23 21 19 27 27 C 1.47422 * 108.70829 * 358.94034 * 18 17 16 28 28 H 1.09003 * 109.47618 * 89.99507 * 1 2 3 29 29 H 1.09004 * 109.47017 * 209.99699 * 1 2 3 30 30 H 1.09004 * 109.47393 * 329.99437 * 1 2 3 31 31 H 1.08992 * 109.47181 * 59.99524 * 5 3 2 32 32 H 1.09005 * 109.46800 * 299.99428 * 5 3 2 33 33 H 1.08998 * 109.95166 * 47.62261 * 8 6 5 34 34 H 1.09003 * 110.06836 * 286.27862 * 8 6 5 35 35 H 1.08998 * 110.78983 * 199.34394 * 9 8 6 36 36 H 1.09002 * 110.95175 * 75.95674 * 9 8 6 37 37 H 1.09002 * 110.32164 * 93.33162 * 13 6 5 38 38 H 1.08998 * 110.31391 * 331.23580 * 13 6 5 39 39 H 1.09004 * 110.72156 * 35.78838 * 16 14 2 40 40 H 1.09000 * 110.72118 * 158.88624 * 16 14 2 41 41 H 1.08994 * 109.88215 * 97.21980 * 17 16 14 42 42 H 1.09001 * 109.88192 * 218.23800 * 17 16 14 43 43 H 0.96999 * 120.00320 * 179.97438 * 22 21 19 44 44 H 1.08999 * 110.36643 * 265.29029 * 27 18 17 45 45 H 1.09003 * 110.36846 * 142.96776 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3517 1.1673 0.0005 5 6 1.3853 2.4723 0.0006 6 6 2.3795 3.6352 0.0011 7 1 3.0682 3.5256 0.8389 8 6 3.1703 3.6446 -1.3205 9 6 3.8982 5.0116 -1.3946 10 16 2.6110 6.1806 -0.8151 11 8 1.8583 6.6421 -1.9286 12 8 3.1906 7.1160 0.0840 13 6 1.6169 4.9691 0.1282 14 6 2.1974 -1.2687 -0.0006 15 1 3.2717 -1.0972 0.0684 16 6 1.8484 -2.1119 -1.2554 17 6 0.5310 -2.8061 -0.8498 18 7 0.4794 -2.8197 0.6195 19 6 -0.5403 -3.3306 1.3774 20 1 -0.4832 -3.2929 2.4553 21 6 -1.6473 -3.8971 0.7604 22 7 -1.7166 -3.9435 -0.5531 23 14 -3.0385 -4.5934 1.7944 24 1 -2.7197 -4.4201 3.2344 25 1 -4.2990 -3.8757 1.4760 26 1 -3.2026 -6.0385 1.4946 27 6 1.7075 -2.1933 1.1416 28 1 -0.3634 0.0001 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3634 0.8899 0.5139 31 1 0.7590 2.5298 0.8907 32 1 0.7584 2.5303 -0.8893 33 1 2.4873 3.5392 -2.1634 34 1 3.8982 2.8333 -1.3266 35 1 4.1933 5.2377 -2.4192 36 1 4.7632 5.0290 -0.7316 37 1 1.5488 5.2680 1.1742 38 1 0.6207 4.8781 -0.3045 39 1 1.6944 -1.4685 -2.1217 40 1 2.6285 -2.8462 -1.4559 41 1 -0.3184 -2.2494 -1.2454 42 1 0.5165 -3.8264 -1.2330 43 1 -2.4899 -4.3396 -0.9843 44 1 2.4568 -2.9535 1.3622 45 1 1.4851 -1.6084 2.0342 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033248828.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:16 Heat of formation + Delta-G solvation = -72.226945 kcal Electronic energy + Delta-G solvation = -27213.057067 eV Core-core repulsion = 23358.964157 eV Total energy + Delta-G solvation = -3854.092910 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.16063 -38.03858 -37.29163 -36.61323 -36.21312 -34.34389 -32.37252 -31.19422 -29.53160 -28.65592 -27.70786 -26.02895 -24.74861 -24.14568 -21.69524 -20.28750 -20.15895 -19.14241 -18.60973 -17.42164 -17.04626 -16.82095 -16.70107 -15.95567 -15.69998 -15.49590 -14.77638 -14.62352 -14.35831 -14.07186 -13.78358 -13.70046 -13.30750 -12.86122 -12.63927 -12.44813 -12.35051 -12.28470 -12.14415 -12.03964 -12.01389 -11.79330 -11.66638 -11.54634 -11.14445 -11.02222 -10.98923 -10.89665 -10.78664 -10.60511 -10.31065 -10.19260 -10.00481 -9.75396 -9.43260 -8.79084 -8.27284 -6.91933 -5.84095 -3.18813 -0.22806 2.23240 2.75583 3.20521 3.31065 3.34262 3.38091 3.39806 3.69485 4.05479 4.27811 4.31383 4.38912 4.48362 4.60874 4.79844 4.98955 5.06485 5.18662 5.28114 5.35685 5.36610 5.42271 5.45056 5.46064 5.62527 5.68328 5.80487 5.81292 5.91085 6.03768 6.13948 6.26836 6.42690 6.46136 6.54500 6.71408 6.98692 7.45314 7.49864 7.71033 7.74238 8.11622 8.35234 9.09081 9.68517 10.33547 11.26697 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.024654 B = 0.002605 C = 0.002492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.459995 B =10744.716793 C =11233.954872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 N -0.585 5.585 3 C 0.508 3.492 4 O -0.556 6.556 5 C -0.132 4.132 6 C -0.065 4.065 7 H 0.102 0.898 8 C -0.121 4.121 9 C -0.582 4.582 10 S 2.384 3.616 11 O -0.940 6.940 12 O -0.944 6.944 13 C -0.592 4.592 14 C 0.122 3.878 15 H 0.100 0.900 16 C -0.155 4.155 17 C 0.174 3.826 18 N -0.602 5.602 19 C -0.233 4.233 20 H 0.078 0.922 21 C -0.004 4.004 22 N -0.918 5.918 23 Si 0.911 3.089 24 H -0.280 1.280 25 H -0.290 1.290 26 H -0.291 1.291 27 C 0.125 3.875 28 H 0.051 0.949 29 H 0.125 0.875 30 H 0.054 0.946 31 H 0.101 0.899 32 H 0.098 0.902 33 H 0.083 0.917 34 H 0.117 0.883 35 H 0.136 0.864 36 H 0.137 0.863 37 H 0.140 0.860 38 H 0.140 0.860 39 H 0.061 0.939 40 H 0.067 0.933 41 H 0.051 0.949 42 H 0.042 0.958 43 H 0.253 0.747 44 H 0.031 0.969 45 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.548 15.424 -1.385 17.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 N -0.316 5.316 3 C 0.297 3.703 4 O -0.436 6.436 5 C -0.173 4.173 6 C -0.085 4.085 7 H 0.120 0.880 8 C -0.160 4.160 9 C -0.712 4.712 10 S 2.569 3.431 11 O -0.938 6.938 12 O -0.941 6.941 13 C -0.721 4.721 14 C 0.018 3.982 15 H 0.117 0.883 16 C -0.194 4.194 17 C 0.050 3.950 18 N -0.330 5.330 19 C -0.361 4.361 20 H 0.096 0.904 21 C -0.201 4.201 22 N -0.565 5.565 23 Si 0.741 3.259 24 H -0.205 1.205 25 H -0.217 1.217 26 H -0.218 1.218 27 C -0.002 4.002 28 H 0.070 0.930 29 H 0.143 0.857 30 H 0.073 0.927 31 H 0.119 0.881 32 H 0.117 0.883 33 H 0.102 0.898 34 H 0.136 0.864 35 H 0.154 0.846 36 H 0.156 0.844 37 H 0.158 0.842 38 H 0.158 0.842 39 H 0.080 0.920 40 H 0.085 0.915 41 H 0.069 0.931 42 H 0.060 0.940 43 H 0.063 0.937 44 H 0.048 0.952 45 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 7.820 16.295 -1.564 18.142 hybrid contribution -0.902 -1.383 0.574 1.748 sum 6.918 14.912 -0.989 16.469 Atomic orbital electron populations 1.22311 0.78372 1.05499 1.02348 1.47733 1.07760 1.05218 1.70900 1.20514 0.87959 0.85442 0.76433 1.90619 1.13875 1.87496 1.51601 1.21752 0.98656 0.91589 1.05255 1.21329 0.96155 0.90964 1.00027 0.87998 1.22453 1.00105 0.96389 0.97038 1.30575 1.15495 1.12476 1.12652 1.09162 0.79071 0.78051 0.76834 1.93620 1.69897 1.79225 1.51016 1.93606 1.76945 1.58704 1.64855 1.30628 1.13555 1.12621 1.15337 1.22257 0.96188 0.82596 0.97175 0.88250 1.23245 1.00887 0.98692 0.96624 1.21224 0.91554 0.98511 0.83735 1.44613 1.17299 1.69195 1.01854 1.19074 0.95109 1.32132 0.89796 0.90381 1.24797 0.98537 1.00961 0.95827 1.69972 1.30027 1.49676 1.06861 0.86071 0.82053 0.78602 0.79161 1.20524 1.21706 1.21756 1.21891 0.90145 0.93501 0.94649 0.93035 0.85728 0.92685 0.88065 0.88321 0.89847 0.86444 0.84588 0.84445 0.84182 0.84225 0.91999 0.91455 0.93112 0.93981 0.93700 0.95157 0.93809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.87 8.50 59.85 0.51 1.38 16 2 N -0.59 -8.94 2.91 -171.48 -0.50 -9.44 16 3 C 0.51 6.94 7.44 -10.98 -0.08 6.86 16 4 O -0.56 -8.75 13.53 5.56 0.08 -8.68 16 5 C -0.13 -1.24 3.59 -27.89 -0.10 -1.34 16 6 C -0.06 -0.52 2.24 -89.48 -0.20 -0.72 16 7 H 0.10 0.85 7.94 -51.93 -0.41 0.43 16 8 C -0.12 -0.98 5.33 -25.12 -0.13 -1.11 16 9 C -0.58 -3.78 7.31 38.24 0.28 -3.50 16 10 S 2.38 19.11 6.10 -107.50 -0.66 18.45 16 11 O -0.94 -10.85 18.15 -57.73 -1.05 -11.90 16 12 O -0.94 -10.88 18.15 -57.73 -1.05 -11.93 16 13 C -0.59 -3.65 6.74 37.77 0.25 -3.40 16 14 C 0.12 2.06 3.66 -65.79 -0.24 1.82 16 15 H 0.10 1.66 7.02 -51.93 -0.36 1.29 16 16 C -0.16 -2.73 6.48 -24.89 -0.16 -2.89 16 17 C 0.17 3.83 4.33 -3.06 -0.01 3.82 16 18 N -0.60 -13.76 1.87 -170.07 -0.32 -14.08 16 19 C -0.23 -5.92 9.79 -15.06 -0.15 -6.06 16 20 H 0.08 1.95 7.83 -52.48 -0.41 1.54 16 21 C 0.00 -0.12 5.49 -17.43 -0.10 -0.21 16 22 N -0.92 -24.92 10.31 55.49 0.57 -24.35 16 23 Si 0.91 20.75 29.55 -169.99 -5.02 15.73 16 24 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 25 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 26 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 27 C 0.12 2.40 6.40 -2.53 -0.02 2.38 16 28 H 0.05 0.78 7.90 -51.93 -0.41 0.37 16 29 H 0.12 2.43 4.74 -51.93 -0.25 2.18 16 30 H 0.05 0.67 6.44 -51.93 -0.33 0.33 16 31 H 0.10 0.83 7.40 -51.93 -0.38 0.44 16 32 H 0.10 0.79 8.08 -51.93 -0.42 0.37 16 33 H 0.08 0.60 8.09 -51.93 -0.42 0.17 16 34 H 0.12 1.17 6.46 -51.93 -0.34 0.84 16 35 H 0.14 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.14 0.76 8.14 -51.93 -0.42 0.33 16 37 H 0.14 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.14 0.69 7.88 -51.93 -0.41 0.28 16 39 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 40 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 41 H 0.05 1.20 6.35 -51.93 -0.33 0.88 16 42 H 0.04 1.06 7.50 -51.93 -0.39 0.67 16 43 H 0.25 6.73 8.31 -40.82 -0.34 6.39 16 44 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 45 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 LS Contribution 358.14 15.07 5.40 5.40 Total: -1.00 -33.64 358.14 -9.66 -43.30 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: -6.96 Total: 0.47 kcal Atomic # 6 Polarization: -2.82 SS G_CDS: -0.15 Total: -2.97 kcal Atomic # 7 Polarization: -47.62 SS G_CDS: -0.25 Total: -47.87 kcal Atomic # 8 Polarization: -30.49 SS G_CDS: -2.02 Total: -32.51 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Atomic # 16 Polarization: 19.11 SS G_CDS: -0.66 Total: 18.45 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -33.64 -9.66 -43.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033248828.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.926 kcal (2) G-P(sol) polarization free energy of solvation -33.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds