Wall clock time and date at job start Tue Mar 31 2020 05:33:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34779 * 119.99776 * 2 1 4 4 O 1.21282 * 120.00134 * 179.97438 * 3 2 1 5 5 C 1.50701 * 120.00101 * 0.02562 * 3 2 1 6 6 C 1.52993 * 109.47096 * 179.97438 * 5 3 2 7 7 H 1.09004 * 109.53431 * 305.35702 * 6 5 3 8 8 C 1.54017 * 109.75500 * 65.74850 * 6 5 3 9 9 C 1.55045 * 106.70283 * 166.91804 * 8 6 5 10 10 S 1.83283 * 102.56610 * 317.61720 * 9 8 6 11 11 O 1.42104 * 109.35145 * 269.81142 * 10 9 8 12 12 O 1.42098 * 109.47601 * 136.64644 * 10 9 8 13 13 C 1.54169 * 109.64835 * 184.99931 * 6 5 3 14 14 C 1.46494 * 119.99911 * 180.02562 * 2 1 3 15 15 H 1.09006 * 110.88487 * 183.87938 * 14 2 1 16 16 C 1.55156 * 111.00587 * 60.00216 * 14 2 1 17 17 C 1.54330 * 102.94131 * 277.42610 * 16 14 2 18 18 N 1.47022 * 107.26570 * 337.80612 * 17 16 14 19 19 C 1.36936 * 125.64398 * 178.98750 * 18 17 16 20 20 H 1.08003 * 120.00133 * 179.97438 * 19 18 17 21 21 C 1.38817 * 120.00401 * 359.97382 * 19 18 17 22 22 N 1.31618 * 119.99637 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00330 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.46950 * 359.97438 * 23 21 19 25 25 H 1.48494 * 109.47297 * 120.00254 * 23 21 19 26 26 H 1.48500 * 109.47034 * 240.00054 * 23 21 19 27 27 C 1.47422 * 108.70829 * 358.94034 * 18 17 16 28 28 H 1.09003 * 109.47618 * 89.99507 * 1 2 3 29 29 H 1.09004 * 109.47017 * 209.99699 * 1 2 3 30 30 H 1.09004 * 109.47393 * 329.99437 * 1 2 3 31 31 H 1.08992 * 109.47181 * 59.99524 * 5 3 2 32 32 H 1.09005 * 109.46800 * 299.99428 * 5 3 2 33 33 H 1.08998 * 109.95166 * 47.62261 * 8 6 5 34 34 H 1.09003 * 110.06836 * 286.27862 * 8 6 5 35 35 H 1.08998 * 110.78983 * 199.34394 * 9 8 6 36 36 H 1.09002 * 110.95175 * 75.95674 * 9 8 6 37 37 H 1.09002 * 110.32164 * 93.33162 * 13 6 5 38 38 H 1.08998 * 110.31391 * 331.23580 * 13 6 5 39 39 H 1.09004 * 110.72156 * 35.78838 * 16 14 2 40 40 H 1.09000 * 110.72118 * 158.88624 * 16 14 2 41 41 H 1.08994 * 109.88215 * 97.21980 * 17 16 14 42 42 H 1.09001 * 109.88192 * 218.23800 * 17 16 14 43 43 H 0.96999 * 120.00320 * 179.97438 * 22 21 19 44 44 H 1.08999 * 110.36643 * 265.29029 * 27 18 17 45 45 H 1.09003 * 110.36846 * 142.96776 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3517 1.1673 0.0005 5 6 1.3853 2.4723 0.0006 6 6 2.3795 3.6352 0.0011 7 1 3.0682 3.5256 0.8389 8 6 3.1703 3.6446 -1.3205 9 6 3.8982 5.0116 -1.3946 10 16 2.6110 6.1806 -0.8151 11 8 1.8583 6.6421 -1.9286 12 8 3.1906 7.1160 0.0840 13 6 1.6169 4.9691 0.1282 14 6 2.1974 -1.2687 -0.0006 15 1 3.2717 -1.0972 0.0684 16 6 1.8484 -2.1119 -1.2554 17 6 0.5310 -2.8061 -0.8498 18 7 0.4794 -2.8197 0.6195 19 6 -0.5403 -3.3306 1.3774 20 1 -0.4832 -3.2929 2.4553 21 6 -1.6473 -3.8971 0.7604 22 7 -1.7166 -3.9435 -0.5531 23 14 -3.0385 -4.5934 1.7944 24 1 -2.7197 -4.4201 3.2344 25 1 -4.2990 -3.8757 1.4760 26 1 -3.2026 -6.0385 1.4946 27 6 1.7075 -2.1933 1.1416 28 1 -0.3634 0.0001 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3634 0.8899 0.5139 31 1 0.7590 2.5298 0.8907 32 1 0.7584 2.5303 -0.8893 33 1 2.4873 3.5392 -2.1634 34 1 3.8982 2.8333 -1.3266 35 1 4.1933 5.2377 -2.4192 36 1 4.7632 5.0290 -0.7316 37 1 1.5488 5.2680 1.1742 38 1 0.6207 4.8781 -0.3045 39 1 1.6944 -1.4685 -2.1217 40 1 2.6285 -2.8462 -1.4559 41 1 -0.3184 -2.2494 -1.2454 42 1 0.5165 -3.8264 -1.2330 43 1 -2.4899 -4.3396 -0.9843 44 1 2.4568 -2.9535 1.3622 45 1 1.4851 -1.6084 2.0342 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033248828.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:14 Heat of formation + Delta-G solvation = -95.375459 kcal Electronic energy + Delta-G solvation = -27214.060862 eV Core-core repulsion = 23358.964157 eV Total energy + Delta-G solvation = -3855.096705 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 1.92 seconds Orbital eigenvalues (eV) -41.29876 -39.32273 -38.05127 -37.47911 -36.97130 -35.75597 -34.04550 -31.97690 -31.11014 -29.75361 -28.90098 -27.39653 -26.18614 -25.10580 -22.67270 -21.92874 -21.23729 -19.87081 -19.69682 -18.88787 -18.30892 -17.73997 -17.47351 -16.82148 -16.68999 -16.62992 -16.44235 -15.66668 -15.59307 -15.11053 -14.91980 -14.61512 -14.33594 -14.14941 -13.79287 -13.45124 -13.39533 -13.36033 -13.19002 -13.09709 -13.06132 -12.87767 -12.80143 -12.78570 -12.66408 -12.33507 -12.20280 -11.96657 -11.92682 -11.79225 -11.74625 -11.53641 -11.47981 -11.22455 -10.70186 -10.54382 -9.59229 -8.76560 -7.81435 -5.16261 -0.83598 1.48944 1.51368 1.59726 1.64335 1.70865 2.13178 2.51802 2.70333 3.09566 3.37811 3.40063 3.60881 3.67494 3.72052 3.87561 3.94084 3.98192 4.07592 4.11964 4.35031 4.38502 4.43883 4.51542 4.66184 4.69486 4.74157 4.80277 4.81510 4.89247 4.92959 4.93745 5.01218 5.08237 5.21868 5.27893 5.35752 5.51150 5.66183 5.71257 5.83462 6.21818 6.60206 7.13998 7.25730 7.79482 8.43710 9.28074 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.024654 B = 0.002605 C = 0.002492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.459995 B =10744.716793 C =11233.954872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.593 5.593 3 C 0.507 3.493 4 O -0.576 6.576 5 C -0.130 4.130 6 C -0.066 4.066 7 H 0.100 0.900 8 C -0.126 4.126 9 C -0.568 4.568 10 S 2.392 3.608 11 O -0.980 6.980 12 O -0.984 6.984 13 C -0.572 4.572 14 C 0.134 3.866 15 H 0.108 0.892 16 C -0.141 4.141 17 C 0.188 3.812 18 N -0.614 5.614 19 C -0.235 4.235 20 H 0.080 0.920 21 C -0.056 4.056 22 N -0.945 5.945 23 Si 0.970 3.030 24 H -0.269 1.269 25 H -0.291 1.291 26 H -0.299 1.299 27 C 0.125 3.875 28 H 0.049 0.951 29 H 0.083 0.917 30 H 0.090 0.910 31 H 0.121 0.879 32 H 0.119 0.881 33 H 0.093 0.907 34 H 0.100 0.900 35 H 0.150 0.850 36 H 0.149 0.851 37 H 0.160 0.840 38 H 0.160 0.840 39 H 0.074 0.926 40 H 0.078 0.922 41 H 0.029 0.971 42 H 0.001 0.999 43 H 0.246 0.754 44 H 0.033 0.967 45 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.734 16.727 -0.690 18.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.324 5.324 3 C 0.298 3.702 4 O -0.457 6.457 5 C -0.170 4.170 6 C -0.086 4.086 7 H 0.118 0.882 8 C -0.165 4.165 9 C -0.700 4.700 10 S 2.581 3.419 11 O -0.977 6.977 12 O -0.981 6.981 13 C -0.703 4.703 14 C 0.029 3.971 15 H 0.126 0.874 16 C -0.181 4.181 17 C 0.063 3.937 18 N -0.341 5.341 19 C -0.364 4.364 20 H 0.097 0.903 21 C -0.250 4.250 22 N -0.594 5.594 23 Si 0.800 3.200 24 H -0.193 1.193 25 H -0.218 1.218 26 H -0.227 1.227 27 C -0.001 4.001 28 H 0.067 0.933 29 H 0.101 0.899 30 H 0.109 0.891 31 H 0.139 0.861 32 H 0.137 0.863 33 H 0.112 0.888 34 H 0.118 0.882 35 H 0.168 0.832 36 H 0.167 0.833 37 H 0.178 0.822 38 H 0.178 0.822 39 H 0.093 0.907 40 H 0.096 0.904 41 H 0.047 0.953 42 H 0.019 0.981 43 H 0.055 0.945 44 H 0.051 0.949 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 8.034 17.657 -0.853 19.417 hybrid contribution -0.884 -1.831 0.391 2.071 sum 7.150 15.826 -0.462 17.372 Atomic orbital electron populations 1.22135 0.78322 1.05128 1.02095 1.47783 1.07701 1.05182 1.71686 1.21233 0.87895 0.86052 0.75048 1.90619 1.15064 1.87831 1.52212 1.21864 0.98842 0.89135 1.07182 1.21339 0.96107 0.91240 0.99947 0.88171 1.22476 1.00132 0.96256 0.97644 1.30486 1.15041 1.10652 1.13794 1.08728 0.79028 0.78243 0.75921 1.93567 1.70953 1.80673 1.52492 1.93553 1.77819 1.61111 1.65653 1.30481 1.13627 1.10062 1.16170 1.22024 0.96668 0.83133 0.95265 0.87434 1.23101 0.98605 0.98894 0.97455 1.20927 0.93208 0.96242 0.83348 1.44751 1.17942 1.69154 1.02227 1.19346 0.95696 1.31135 0.90180 0.90261 1.25471 1.00709 1.02022 0.96749 1.70160 1.30244 1.50824 1.08124 0.85136 0.79426 0.77091 0.78393 1.19349 1.21813 1.22709 1.21988 0.88743 0.93834 0.95578 0.93268 0.89887 0.89133 0.86053 0.86293 0.88815 0.88189 0.83224 0.83331 0.82235 0.82225 0.90717 0.90378 0.95327 0.98066 0.94482 0.94949 0.93697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.89 8.50 127.77 1.09 2.98 16 2 N -0.59 -16.81 2.91 -814.83 -2.37 -19.18 16 3 C 0.51 12.39 7.44 87.66 0.65 13.04 16 4 O -0.58 -16.77 13.53 -3.04 -0.04 -16.81 16 5 C -0.13 -1.92 3.59 29.85 0.11 -1.82 16 6 C -0.07 -0.84 2.24 -10.06 -0.02 -0.86 16 7 H 0.10 1.35 7.94 -2.39 -0.02 1.33 16 8 C -0.13 -1.70 5.33 31.64 0.17 -1.54 16 9 C -0.57 -6.13 7.31 72.68 0.53 -5.60 16 10 S 2.39 34.31 6.10 -56.49 -0.34 33.96 16 11 O -0.98 -21.50 18.15 -127.47 -2.31 -23.81 16 12 O -0.98 -21.79 18.15 -127.47 -2.31 -24.11 16 13 C -0.57 -5.04 6.74 72.38 0.49 -4.55 16 14 C 0.13 4.33 3.66 46.38 0.17 4.50 16 15 H 0.11 3.37 7.02 -2.38 -0.02 3.35 16 16 C -0.14 -4.84 6.48 31.78 0.21 -4.64 16 17 C 0.19 8.40 4.33 86.73 0.38 8.78 16 18 N -0.61 -28.26 1.87 -691.99 -1.30 -29.55 16 19 C -0.23 -11.99 9.79 84.03 0.82 -11.17 16 20 H 0.08 3.94 7.83 -2.91 -0.02 3.92 16 21 C -0.06 -2.94 5.49 84.86 0.47 -2.47 16 22 N -0.94 -52.65 10.31 21.65 0.22 -52.43 16 23 Si 0.97 43.01 29.55 68.60 2.03 45.04 16 24 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 25 H -0.29 -12.85 7.11 99.48 0.71 -12.15 16 26 H -0.30 -13.63 7.11 99.48 0.71 -12.92 16 27 C 0.12 4.69 6.40 86.85 0.56 5.24 16 28 H 0.05 1.41 7.90 -2.39 -0.02 1.39 16 29 H 0.08 3.18 4.74 -2.39 -0.01 3.17 16 30 H 0.09 1.89 6.44 -2.39 -0.02 1.88 16 31 H 0.12 1.38 7.40 -2.39 -0.02 1.36 16 32 H 0.12 1.35 8.08 -2.38 -0.02 1.33 16 33 H 0.09 1.06 8.09 -2.39 -0.02 1.04 16 34 H 0.10 1.79 6.46 -2.39 -0.02 1.78 16 35 H 0.15 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.15 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.16 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.16 0.87 7.88 -2.39 -0.02 0.85 16 39 H 0.07 2.37 8.14 -2.38 -0.02 2.35 16 40 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 41 H 0.03 1.40 6.35 -2.39 -0.02 1.38 16 42 H 0.00 0.06 7.50 -2.39 -0.02 0.04 16 43 H 0.25 13.48 8.31 -92.71 -0.77 12.71 16 44 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 45 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 Total: -1.00 -74.19 358.14 0.16 -74.03 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: 0.99 Total: 10.95 kcal Atomic # 6 Polarization: -3.70 SS G_CDS: 5.61 Total: 1.90 kcal Atomic # 7 Polarization: -97.71 SS G_CDS: -3.44 Total: -101.16 kcal Atomic # 8 Polarization: -60.06 SS G_CDS: -4.67 Total: -64.72 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.04 kcal Atomic # 16 Polarization: 34.31 SS G_CDS: -0.34 Total: 33.96 kcal Total: -74.19 0.16 -74.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033248828.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.348 kcal (2) G-P(sol) polarization free energy of solvation -74.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.92 seconds