Wall clock time and date at job start Tue Mar 31 2020 05:31:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.34782 * 119.99650 * 2 1 4 4 O 1.21273 * 120.00237 * 4.89108 * 3 2 1 5 5 C 1.50703 * 119.99427 * 184.89531 * 3 2 1 6 6 C 1.52584 * 109.23915 * 281.16703 * 5 3 2 7 7 C 1.53040 * 109.98609 * 169.71724 * 6 5 3 8 8 S 1.81674 * 108.99579 * 63.64685 * 7 6 5 9 9 O 1.42102 * 108.66100 * 191.37315 * 8 7 6 10 10 O 1.42093 * 108.66323 * 60.03692 * 8 7 6 11 11 C 1.81672 * 101.30854 * 305.70499 * 8 7 6 12 12 C 1.52590 * 109.24007 * 160.01791 * 5 3 2 13 13 C 1.46492 * 120.00119 * 179.97438 * 2 1 3 14 14 H 1.08997 * 110.88992 * 190.17051 * 13 2 1 15 15 C 1.55156 * 111.00538 * 66.28681 * 13 2 1 16 16 C 1.54325 * 102.94332 * 206.38627 * 15 13 2 17 17 N 1.47032 * 107.27051 * 22.19371 * 16 15 13 18 18 C 1.36938 * 125.64533 * 181.02139 * 17 16 15 19 19 H 1.07998 * 119.99400 * 180.02562 * 18 17 16 20 20 C 1.38813 * 120.00121 * 0.02639 * 18 17 16 21 21 N 1.31617 * 120.00077 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99575 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.46807 * 179.97438 * 22 20 18 24 24 H 1.48500 * 109.47354 * 299.99813 * 22 20 18 25 25 H 1.48502 * 109.46839 * 60.00198 * 22 20 18 26 26 C 1.47426 * 108.70051 * 1.28704 * 17 16 15 27 27 H 1.08997 * 109.46914 * 264.71824 * 1 2 3 28 28 H 1.08995 * 109.46739 * 24.72217 * 1 2 3 29 29 H 1.08999 * 109.46898 * 144.71806 * 1 2 3 30 30 H 1.08998 * 109.23954 * 40.57387 * 5 3 2 31 31 H 1.08999 * 109.39182 * 289.87628 * 6 5 3 32 32 H 1.08999 * 109.38731 * 49.56311 * 6 5 3 33 33 H 1.09002 * 109.55016 * 303.79474 * 7 6 5 34 34 H 1.08995 * 109.55310 * 183.50403 * 7 6 5 35 35 H 1.09001 * 109.54750 * 294.43971 * 11 8 7 36 36 H 1.08997 * 109.54718 * 174.15779 * 11 8 7 37 37 H 1.08999 * 109.38324 * 310.44098 * 12 5 3 38 38 H 1.08999 * 109.38426 * 70.12478 * 12 5 3 39 39 H 1.08994 * 110.72031 * 88.02506 * 15 13 2 40 40 H 1.09004 * 110.72035 * 324.74273 * 15 13 2 41 41 H 1.08992 * 109.88383 * 262.77413 * 16 15 13 42 42 H 1.09004 * 109.88692 * 141.60490 * 16 15 13 43 43 H 0.97000 * 119.99715 * 179.97438 * 21 20 18 44 44 H 1.08998 * 110.36613 * 94.48789 * 26 17 16 45 45 H 1.08999 * 110.36466 * 216.80857 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 1.5358 2.2156 0.0895 5 6 3.6418 1.1696 -0.1114 6 6 4.2472 0.8313 1.2478 7 6 5.7495 0.5776 1.1027 8 16 6.5565 2.1073 0.5463 9 8 7.8902 1.8036 0.1612 10 8 6.3244 3.1217 1.5138 11 6 5.5947 2.4953 -0.9452 12 6 4.1091 2.5441 -0.5813 13 6 2.1976 -1.2686 0.0006 14 1 3.2599 -1.1040 0.1803 15 6 1.9712 -2.0421 -1.3252 16 6 2.1879 -3.5123 -0.9090 17 7 1.9696 -3.5917 0.5428 18 6 2.0853 -4.7224 1.3066 19 1 1.9030 -4.6765 2.3701 20 6 2.4370 -5.9274 0.7139 21 7 2.6588 -5.9832 -0.5822 22 14 2.5956 -7.4695 1.7560 23 1 2.9779 -8.6143 0.8909 24 1 3.6386 -7.2616 2.7924 25 1 1.2955 -7.7587 2.4130 26 6 1.5993 -2.2537 1.0390 27 1 -0.3633 -0.0946 1.0233 28 1 -0.3632 0.9335 -0.4298 29 1 -0.3633 -0.8389 -0.5936 30 1 3.9493 0.4178 -0.8382 31 1 4.0854 1.6632 1.9332 32 1 3.7663 -0.0622 1.6458 33 1 5.9171 -0.2108 0.3690 34 1 6.1631 0.2762 2.0650 35 1 5.7609 1.7240 -1.6973 36 1 5.9059 3.4631 -1.3384 37 1 3.5319 2.8427 -1.4564 38 1 3.9557 3.2707 0.2166 39 1 2.7020 -1.7423 -2.0763 40 1 0.9558 -1.8908 -1.6915 41 1 3.2061 -3.8191 -1.1481 42 1 1.4742 -4.1533 -1.4267 43 1 2.9049 -6.8252 -0.9963 44 1 0.5149 -2.1516 1.0814 45 1 2.0363 -2.0794 2.0222 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033464918.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:40 Heat of formation + Delta-G solvation = -74.777686 kcal Electronic energy + Delta-G solvation = -27834.499549 eV Core-core repulsion = 23980.296031 eV Total energy + Delta-G solvation = -3854.203519 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.55917 -37.85800 -37.32719 -36.54379 -36.22588 -34.78357 -32.19600 -32.08078 -29.48549 -29.17964 -27.53995 -26.45441 -24.53387 -23.94940 -22.02945 -20.81089 -20.28220 -19.16210 -18.83717 -17.51512 -17.25075 -16.96464 -16.59690 -15.99554 -15.79084 -15.32691 -14.89714 -14.58106 -14.39325 -14.27947 -13.97844 -13.47247 -13.41323 -13.10773 -12.82192 -12.63311 -12.53173 -12.36825 -12.27772 -12.21466 -12.11462 -11.97718 -11.85744 -11.68822 -11.30353 -11.07729 -11.05995 -10.96211 -10.88763 -10.45249 -10.30473 -10.22951 -10.11389 -9.86364 -9.69343 -8.75613 -8.51418 -6.99976 -5.84757 -3.19801 -0.22393 2.40753 2.50026 2.92814 3.32766 3.37840 3.38618 3.40157 3.67025 4.09878 4.21436 4.28779 4.33014 4.40889 4.60623 4.69227 4.87300 4.96112 5.06718 5.10635 5.20171 5.27711 5.38811 5.45464 5.46298 5.50383 5.50849 5.56186 5.64435 5.75968 5.82206 5.89291 6.00858 6.08506 6.27863 6.37785 6.52530 6.60940 7.39473 7.41110 7.43583 7.67508 8.08747 8.12340 9.07300 9.67116 10.30465 11.26557 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.013792 B = 0.003673 C = 0.003143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2029.627270 B = 7621.618347 C = 8907.845469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.597 5.597 3 C 0.524 3.476 4 O -0.543 6.543 5 C -0.131 4.131 6 C -0.107 4.107 7 C -0.600 4.600 8 S 2.414 3.586 9 O -0.944 6.944 10 O -0.936 6.936 11 C -0.603 4.603 12 C -0.090 4.090 13 C 0.107 3.893 14 H 0.103 0.897 15 C -0.156 4.156 16 C 0.178 3.822 17 N -0.602 5.602 18 C -0.234 4.234 19 H 0.078 0.922 20 C -0.004 4.004 21 N -0.921 5.921 22 Si 0.913 3.087 23 H -0.289 1.289 24 H -0.284 1.284 25 H -0.284 1.284 26 C 0.131 3.869 27 H 0.056 0.944 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.108 0.892 31 H 0.094 0.906 32 H 0.100 0.900 33 H 0.139 0.861 34 H 0.142 0.858 35 H 0.135 0.865 36 H 0.137 0.863 37 H 0.093 0.907 38 H 0.094 0.906 39 H 0.063 0.937 40 H 0.064 0.936 41 H 0.050 0.950 42 H 0.046 0.954 43 H 0.254 0.746 44 H 0.027 0.973 45 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.898 14.718 -1.886 15.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.329 5.329 3 C 0.312 3.688 4 O -0.421 6.421 5 C -0.152 4.152 6 C -0.146 4.146 7 C -0.729 4.729 8 S 2.596 3.404 9 O -0.941 6.941 10 O -0.933 6.933 11 C -0.732 4.732 12 C -0.129 4.129 13 C 0.003 3.997 14 H 0.121 0.879 15 C -0.195 4.195 16 C 0.053 3.947 17 N -0.329 5.329 18 C -0.362 4.362 19 H 0.096 0.904 20 C -0.200 4.200 21 N -0.568 5.568 22 Si 0.743 3.257 23 H -0.215 1.215 24 H -0.211 1.211 25 H -0.211 1.211 26 C 0.004 3.996 27 H 0.075 0.925 28 H 0.093 0.907 29 H 0.091 0.909 30 H 0.126 0.874 31 H 0.112 0.888 32 H 0.119 0.881 33 H 0.158 0.842 34 H 0.160 0.840 35 H 0.154 0.846 36 H 0.156 0.844 37 H 0.112 0.888 38 H 0.113 0.887 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.068 0.932 42 H 0.064 0.936 43 H 0.065 0.935 44 H 0.045 0.955 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 3.339 15.481 -1.502 15.908 hybrid contribution -0.535 -1.613 -0.006 1.700 sum 2.803 13.868 -1.508 14.229 Atomic orbital electron populations 1.21621 0.79187 1.02945 1.02056 1.47844 1.07179 1.05889 1.71961 1.20151 0.89012 0.83400 0.76279 1.90685 1.70125 1.31175 1.50118 1.21550 0.94003 1.00056 0.99624 1.21328 0.91375 1.05557 0.96327 1.30221 1.07254 1.21623 1.13836 1.08153 0.76267 0.77965 0.77984 1.93602 1.32329 1.84892 1.83293 1.93592 1.86393 1.55143 1.58172 1.30243 1.09391 1.12609 1.20983 1.21073 0.91098 0.96256 1.04443 1.22798 0.96433 0.82131 0.98315 0.87903 1.23298 1.01212 0.99117 0.95914 1.21172 1.00945 0.88405 0.84186 1.44373 1.81429 1.03179 1.03935 1.18988 1.41000 0.85252 0.90943 0.90387 1.24796 1.01400 0.97787 0.96043 1.69928 1.52877 1.25394 1.08606 0.86190 0.77967 0.82519 0.79011 1.21515 1.21064 1.21099 1.21787 0.97141 0.85855 0.94848 0.92507 0.90698 0.90872 0.87387 0.88775 0.88123 0.84242 0.84023 0.84629 0.84440 0.88832 0.88720 0.91836 0.91778 0.93163 0.93591 0.93543 0.95520 0.93918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.05 8.95 59.85 0.54 1.59 16 2 N -0.60 -7.90 2.91 -171.35 -0.50 -8.40 16 3 C 0.52 6.82 6.77 -10.98 -0.07 6.74 16 4 O -0.54 -8.51 15.69 5.56 0.09 -8.42 16 5 C -0.13 -1.28 1.44 -92.19 -0.13 -1.41 16 6 C -0.11 -1.00 4.51 -26.92 -0.12 -1.12 16 7 C -0.60 -4.65 6.35 37.18 0.24 -4.42 16 8 S 2.41 21.54 5.31 -107.50 -0.57 20.97 16 9 O -0.94 -11.67 18.10 -57.81 -1.05 -12.71 16 10 O -0.94 -11.46 17.94 -57.81 -1.04 -12.50 16 11 C -0.60 -4.01 6.35 37.17 0.24 -3.78 16 12 C -0.09 -0.78 4.37 -26.93 -0.12 -0.90 16 13 C 0.11 1.56 2.62 -65.67 -0.17 1.39 16 14 H 0.10 1.35 4.64 -51.93 -0.24 1.11 16 15 C -0.16 -2.47 6.54 -24.90 -0.16 -2.63 16 16 C 0.18 3.84 5.37 -3.06 -0.02 3.82 16 17 N -0.60 -13.85 3.39 -169.92 -0.58 -14.42 16 18 C -0.23 -6.05 10.28 -15.06 -0.15 -6.21 16 19 H 0.08 1.96 7.83 -52.49 -0.41 1.54 16 20 C 0.00 -0.09 5.49 -17.43 -0.10 -0.19 16 21 N -0.92 -25.37 10.31 55.49 0.57 -24.80 16 22 Si 0.91 20.99 29.55 -169.99 -5.02 15.96 16 23 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 24 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 25 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 26 C 0.13 2.36 6.74 -2.41 -0.02 2.35 16 27 H 0.06 0.69 7.97 -51.93 -0.41 0.28 16 28 H 0.07 0.92 7.34 -51.93 -0.38 0.54 16 29 H 0.07 0.89 6.76 -51.93 -0.35 0.54 16 30 H 0.11 0.89 7.07 -51.93 -0.37 0.52 16 31 H 0.09 0.86 8.01 -51.93 -0.42 0.44 16 32 H 0.10 1.01 6.42 -51.93 -0.33 0.68 16 33 H 0.14 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.14 0.96 8.14 -51.93 -0.42 0.53 16 35 H 0.14 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.14 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.09 0.81 8.05 -51.93 -0.42 0.40 16 38 H 0.09 0.88 8.01 -51.93 -0.42 0.47 16 39 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.06 0.98 6.76 -51.93 -0.35 0.63 16 41 H 0.05 1.20 7.38 -51.93 -0.38 0.82 16 42 H 0.05 1.13 7.50 -51.93 -0.39 0.74 16 43 H 0.25 6.88 8.31 -40.82 -0.34 6.54 16 44 H 0.03 0.49 6.70 -51.93 -0.35 0.14 16 45 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 357.91 15.07 5.39 5.39 Total: -1.00 -34.84 357.91 -9.65 -44.49 By element: Atomic # 1 Polarization: 6.09 SS G_CDS: -6.89 Total: -0.81 kcal Atomic # 6 Polarization: -4.71 SS G_CDS: -0.06 Total: -4.77 kcal Atomic # 7 Polarization: -47.12 SS G_CDS: -0.50 Total: -47.62 kcal Atomic # 8 Polarization: -31.63 SS G_CDS: -2.00 Total: -33.63 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.96 kcal Atomic # 16 Polarization: 21.54 SS G_CDS: -0.57 Total: 20.97 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -34.84 -9.65 -44.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033464918.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.284 kcal (2) G-P(sol) polarization free energy of solvation -34.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds