Wall clock time and date at job start Tue Mar 31 2020 05:33:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34779 * 119.99923 * 2 1 4 4 O 1.21278 * 119.99689 * 5.68865 * 3 2 1 5 5 C 1.50699 * 119.99963 * 185.67954 * 3 2 1 6 6 H 1.09000 * 109.38684 * 36.39735 * 5 3 2 7 7 C 1.52590 * 109.38728 * 276.71019 * 5 3 2 8 8 C 1.52593 * 110.64171 * 169.85443 * 7 5 3 9 9 C 1.53036 * 109.98493 * 69.98870 * 8 7 5 10 10 S 1.81674 * 108.99880 * 296.35143 * 9 8 7 11 11 O 1.42099 * 108.65815 * 299.96685 * 10 9 8 12 12 O 1.42096 * 108.66249 * 168.62596 * 10 9 8 13 13 C 1.53040 * 109.38309 * 156.18559 * 5 3 2 14 14 C 1.46504 * 119.99912 * 180.02562 * 2 1 3 15 15 H 1.09002 * 110.91139 * 189.91810 * 14 2 1 16 16 C 1.55157 * 111.00426 * 313.81370 * 14 2 1 17 17 C 1.54325 * 102.94074 * 153.57948 * 16 14 2 18 18 N 1.47027 * 107.26995 * 337.81047 * 17 16 14 19 19 C 1.36935 * 125.64467 * 178.97317 * 18 17 16 20 20 H 1.08005 * 119.99621 * 179.97438 * 19 18 17 21 21 C 1.38814 * 120.00300 * 359.97438 * 19 18 17 22 22 N 1.31613 * 119.99911 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 120.00039 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47392 * 89.99340 * 23 21 19 25 25 H 1.48498 * 109.47092 * 209.99783 * 23 21 19 26 26 H 1.48495 * 109.47229 * 329.99585 * 23 21 19 27 27 C 1.47421 * 108.70529 * 358.94147 * 18 17 16 28 28 H 1.09000 * 109.46805 * 269.14482 * 1 2 3 29 29 H 1.09000 * 109.47424 * 29.14482 * 1 2 3 30 30 H 1.08996 * 109.47318 * 149.15060 * 1 2 3 31 31 H 1.09003 * 109.24144 * 290.15912 * 7 5 3 32 32 H 1.09001 * 109.24013 * 49.56159 * 7 5 3 33 33 H 1.08992 * 109.38465 * 309.82811 * 8 7 5 34 34 H 1.09001 * 109.29650 * 190.08878 * 8 7 5 35 35 H 1.08999 * 109.55039 * 176.49283 * 9 8 7 36 36 H 1.09008 * 109.62943 * 56.25359 * 9 8 7 37 37 H 1.08997 * 109.54854 * 303.65826 * 13 5 3 38 38 H 1.08999 * 109.54712 * 63.85547 * 13 5 3 39 39 H 1.09007 * 110.71754 * 35.22065 * 16 14 2 40 40 H 1.08991 * 110.72354 * 271.94408 * 16 14 2 41 41 H 1.08997 * 109.88360 * 218.39625 * 17 16 14 42 42 H 1.08993 * 109.87906 * 97.22902 * 17 16 14 43 43 H 0.97004 * 120.00142 * 180.02562 * 22 21 19 44 44 H 1.08994 * 110.36894 * 142.96729 * 27 18 17 45 45 H 1.09002 * 110.36802 * 265.18116 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5369 2.2149 0.1041 5 6 3.6403 1.1704 -0.1292 6 1 3.9467 0.3748 -0.8082 7 6 4.2671 0.9328 1.2416 8 6 5.7665 0.6812 1.1112 9 6 6.4797 1.9717 0.7013 10 16 5.8969 2.4723 -0.9450 11 8 6.1969 1.4347 -1.8684 12 8 6.3535 3.7921 -1.2071 13 6 4.0992 2.5195 -0.6874 14 6 2.1975 -1.2688 -0.0006 15 1 3.2606 -1.1043 0.1749 16 6 1.6071 -2.2523 1.0442 17 6 1.9755 -3.6343 0.4647 18 7 2.2010 -3.4569 -0.9773 19 6 2.5678 -4.4421 -1.8548 20 1 2.7090 -4.2092 -2.8999 21 6 2.7583 -5.7401 -1.4010 22 7 2.5869 -6.0238 -0.1273 23 14 3.2580 -7.0841 -2.5982 24 1 4.7394 -7.1567 -2.6709 25 1 2.7208 -8.3875 -2.1315 26 1 2.7110 -6.7767 -3.9441 27 6 1.9661 -2.0430 -1.3222 28 1 -0.3633 -0.0153 1.0276 29 1 -0.3634 0.8975 -0.5005 30 1 -0.3634 -0.8822 -0.5269 31 1 4.1030 1.8093 1.8685 32 1 3.7966 0.0664 1.7064 33 1 5.9404 -0.0842 0.3549 34 1 6.1590 0.3394 2.0689 35 1 7.5556 1.7999 0.6707 36 1 6.2563 2.7584 1.4221 37 1 3.5995 2.7102 -1.6372 38 1 3.8513 3.3104 0.0205 39 1 0.5251 -2.1387 1.1124 40 1 2.0734 -2.1058 2.0184 41 1 1.1569 -4.3351 0.6284 42 1 2.8841 -4.0049 0.9392 43 1 2.7203 -6.9307 0.1898 44 1 2.6746 -1.7153 -2.0829 45 1 0.9433 -1.9027 -1.6718 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033465541.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:19 Heat of formation + Delta-G solvation = -74.731896 kcal Electronic energy + Delta-G solvation = -27933.363504 eV Core-core repulsion = 24079.161971 eV Total energy + Delta-G solvation = -3854.201533 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.48167 -37.79744 -37.36682 -36.61743 -36.21109 -34.74427 -32.30455 -32.04586 -29.29265 -28.47790 -27.67592 -26.91682 -24.65409 -23.98439 -21.84506 -20.81087 -20.23848 -19.10507 -18.86706 -17.76343 -17.11974 -16.69234 -16.26744 -15.98866 -15.63819 -15.44955 -15.11864 -14.72928 -14.42731 -14.27585 -13.96785 -13.65373 -13.30259 -12.92397 -12.89838 -12.53019 -12.48620 -12.36057 -12.24894 -12.20331 -11.94744 -11.83072 -11.77727 -11.60504 -11.29371 -11.07567 -11.01707 -10.96746 -10.84795 -10.59453 -10.37854 -10.14924 -10.06394 -9.80389 -9.63469 -8.71222 -8.50852 -6.94161 -5.79711 -3.14160 -0.22132 2.37957 2.52661 2.99758 3.36894 3.41769 3.42805 3.43881 3.66643 4.07769 4.20452 4.33701 4.39505 4.42604 4.49795 4.71232 4.92646 5.03314 5.07692 5.17273 5.18482 5.30290 5.43236 5.45914 5.49892 5.51740 5.54651 5.57742 5.65643 5.71880 5.81912 5.88766 6.06099 6.11708 6.30853 6.42421 6.56186 6.65776 7.43075 7.46558 7.46871 7.72992 8.11359 8.16051 9.12872 9.72576 10.35911 11.31840 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.013629 B = 0.003823 C = 0.003318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2053.876573 B = 7323.066535 C = 8436.395760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.597 5.597 3 C 0.527 3.473 4 O -0.545 6.545 5 C -0.101 4.101 6 H 0.118 0.882 7 C -0.134 4.134 8 C -0.110 4.110 9 C -0.603 4.603 10 S 2.416 3.584 11 O -0.929 6.929 12 O -0.944 6.944 13 C -0.585 4.585 14 C 0.108 3.892 15 H 0.103 0.897 16 C -0.152 4.152 17 C 0.178 3.822 18 N -0.602 5.602 19 C -0.231 4.231 20 H 0.079 0.921 21 C -0.005 4.005 22 N -0.922 5.922 23 Si 0.913 3.087 24 H -0.288 1.288 25 H -0.290 1.290 26 H -0.281 1.281 27 C 0.126 3.874 28 H 0.054 0.946 29 H 0.072 0.928 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.095 0.905 33 H 0.092 0.908 34 H 0.094 0.906 35 H 0.136 0.864 36 H 0.133 0.867 37 H 0.138 0.862 38 H 0.142 0.858 39 H 0.065 0.935 40 H 0.064 0.936 41 H 0.046 0.954 42 H 0.051 0.949 43 H 0.253 0.747 44 H 0.044 0.956 45 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.326 15.234 5.670 16.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.328 5.328 3 C 0.313 3.687 4 O -0.423 6.423 5 C -0.123 4.123 6 H 0.136 0.864 7 C -0.172 4.172 8 C -0.148 4.148 9 C -0.733 4.733 10 S 2.598 3.402 11 O -0.926 6.926 12 O -0.941 6.941 13 C -0.714 4.714 14 C 0.004 3.996 15 H 0.121 0.879 16 C -0.191 4.191 17 C 0.053 3.947 18 N -0.329 5.329 19 C -0.359 4.359 20 H 0.097 0.903 21 C -0.201 4.201 22 N -0.569 5.569 23 Si 0.743 3.257 24 H -0.215 1.215 25 H -0.217 1.217 26 H -0.206 1.206 27 C -0.001 4.001 28 H 0.072 0.928 29 H 0.091 0.909 30 H 0.096 0.904 31 H 0.102 0.898 32 H 0.113 0.887 33 H 0.111 0.889 34 H 0.113 0.887 35 H 0.154 0.846 36 H 0.152 0.848 37 H 0.156 0.844 38 H 0.161 0.839 39 H 0.084 0.916 40 H 0.083 0.917 41 H 0.064 0.936 42 H 0.069 0.931 43 H 0.063 0.937 44 H 0.063 0.937 45 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 3.529 15.732 4.950 16.866 hybrid contribution -0.267 -0.959 0.141 1.006 sum 3.261 14.773 5.091 15.962 Atomic orbital electron populations 1.21621 0.79186 1.03159 1.01780 1.47846 1.07139 1.05897 1.71906 1.20123 0.88945 0.83385 0.76238 1.90664 1.70082 1.31332 1.50177 1.21100 0.94681 0.96734 0.99811 0.86421 1.21747 0.95340 1.04926 0.95184 1.21291 0.93415 0.94775 1.05294 1.30245 1.11520 1.08238 1.23273 1.08102 0.78494 0.75363 0.78215 1.93631 1.82443 1.58037 1.58536 1.93596 1.78967 1.37674 1.83836 1.30179 1.24751 1.04673 1.11768 1.22742 0.96203 0.81934 0.98729 0.87937 1.23251 1.00516 0.97789 0.97516 1.21173 1.00376 0.89624 0.83501 1.44372 1.81143 1.02533 1.04841 1.19058 1.39508 0.87242 0.90049 0.90284 1.24787 1.01647 0.97321 0.96376 1.69938 1.55192 1.19193 1.12613 0.86109 0.78273 0.81377 0.79944 1.21473 1.21670 1.20646 1.21827 0.98405 0.86196 0.93719 0.92759 0.90934 0.90442 0.89802 0.88662 0.88922 0.88721 0.84605 0.84832 0.84362 0.83940 0.91626 0.91727 0.93558 0.93130 0.93671 0.93742 0.95799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.08 8.87 59.85 0.53 1.61 16 2 N -0.60 -8.19 2.91 -171.48 -0.50 -8.69 16 3 C 0.53 7.13 6.74 -10.98 -0.07 7.06 16 4 O -0.54 -8.69 15.78 5.56 0.09 -8.60 16 5 C -0.10 -1.08 1.50 -91.96 -0.14 -1.22 16 6 H 0.12 1.28 6.77 -51.93 -0.35 0.93 16 7 C -0.13 -1.11 4.49 -27.15 -0.12 -1.23 16 8 C -0.11 -0.78 5.73 -26.92 -0.15 -0.94 16 9 C -0.60 -3.81 6.35 37.18 0.24 -3.57 16 10 S 2.42 22.94 5.31 -107.50 -0.57 22.37 16 11 O -0.93 -12.37 17.94 -57.81 -1.04 -13.41 16 12 O -0.94 -11.89 18.10 -57.81 -1.05 -12.93 16 13 C -0.58 -5.45 5.07 37.18 0.19 -5.26 16 14 C 0.11 1.63 2.73 -65.78 -0.18 1.45 16 15 H 0.10 1.42 4.86 -51.93 -0.25 1.16 16 16 C -0.15 -2.44 6.45 -24.90 -0.16 -2.60 16 17 C 0.18 3.91 5.37 -3.06 -0.02 3.89 16 18 N -0.60 -14.20 3.39 -170.08 -0.58 -14.78 16 19 C -0.23 -6.11 10.28 -15.06 -0.15 -6.26 16 20 H 0.08 2.04 7.83 -52.48 -0.41 1.63 16 21 C 0.00 -0.13 5.49 -17.43 -0.10 -0.23 16 22 N -0.92 -25.71 10.31 55.49 0.57 -25.14 16 23 Si 0.91 21.38 29.55 -169.99 -5.02 16.36 16 24 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 25 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 26 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 27 C 0.13 2.37 6.82 -2.53 -0.02 2.36 16 28 H 0.05 0.64 8.10 -51.93 -0.42 0.22 16 29 H 0.07 0.92 7.48 -51.93 -0.39 0.53 16 30 H 0.08 0.99 6.65 -51.93 -0.35 0.64 16 31 H 0.08 0.58 8.09 -51.93 -0.42 0.16 16 32 H 0.09 0.82 6.86 -51.93 -0.36 0.47 16 33 H 0.09 0.74 8.01 -51.93 -0.42 0.33 16 34 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.14 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.13 0.55 8.14 -51.92 -0.42 0.13 16 37 H 0.14 1.29 8.14 -51.93 -0.42 0.87 16 38 H 0.14 1.13 8.00 -51.93 -0.42 0.72 16 39 H 0.07 1.01 6.73 -51.93 -0.35 0.66 16 40 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 41 H 0.05 1.15 7.51 -51.93 -0.39 0.76 16 42 H 0.05 1.23 7.38 -51.93 -0.38 0.84 16 43 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 44 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 45 H 0.02 0.46 6.76 -51.93 -0.35 0.11 16 LS Contribution 358.69 15.07 5.41 5.41 Total: -1.00 -35.45 358.69 -9.77 -45.22 By element: Atomic # 1 Polarization: 6.05 SS G_CDS: -6.92 Total: -0.87 kcal Atomic # 6 Polarization: -4.79 SS G_CDS: -0.16 Total: -4.94 kcal Atomic # 7 Polarization: -48.10 SS G_CDS: -0.50 Total: -48.60 kcal Atomic # 8 Polarization: -32.94 SS G_CDS: -2.00 Total: -34.94 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 16 Polarization: 22.94 SS G_CDS: -0.57 Total: 22.37 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -35.45 -9.77 -45.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033465541.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.513 kcal (2) G-P(sol) polarization free energy of solvation -35.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds