Wall clock time and date at job start Tue Mar 31 2020 05:33:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34779 * 119.99923 * 2 1 4 4 O 1.21278 * 119.99689 * 5.68865 * 3 2 1 5 5 C 1.50699 * 119.99963 * 185.67954 * 3 2 1 6 6 H 1.09000 * 109.38684 * 36.39735 * 5 3 2 7 7 C 1.52590 * 109.38728 * 276.71019 * 5 3 2 8 8 C 1.52593 * 110.64171 * 169.85443 * 7 5 3 9 9 C 1.53036 * 109.98493 * 69.98870 * 8 7 5 10 10 S 1.81674 * 108.99880 * 296.35143 * 9 8 7 11 11 O 1.42099 * 108.65815 * 299.96685 * 10 9 8 12 12 O 1.42096 * 108.66249 * 168.62596 * 10 9 8 13 13 C 1.53040 * 109.38309 * 156.18559 * 5 3 2 14 14 C 1.46504 * 119.99912 * 180.02562 * 2 1 3 15 15 H 1.09002 * 110.91139 * 189.91810 * 14 2 1 16 16 C 1.55157 * 111.00426 * 313.81370 * 14 2 1 17 17 C 1.54325 * 102.94074 * 153.57948 * 16 14 2 18 18 N 1.47027 * 107.26995 * 337.81047 * 17 16 14 19 19 C 1.36935 * 125.64467 * 178.97317 * 18 17 16 20 20 H 1.08005 * 119.99621 * 179.97438 * 19 18 17 21 21 C 1.38814 * 120.00300 * 359.97438 * 19 18 17 22 22 N 1.31613 * 119.99911 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 120.00039 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47392 * 89.99340 * 23 21 19 25 25 H 1.48498 * 109.47092 * 209.99783 * 23 21 19 26 26 H 1.48495 * 109.47229 * 329.99585 * 23 21 19 27 27 C 1.47421 * 108.70529 * 358.94147 * 18 17 16 28 28 H 1.09000 * 109.46805 * 269.14482 * 1 2 3 29 29 H 1.09000 * 109.47424 * 29.14482 * 1 2 3 30 30 H 1.08996 * 109.47318 * 149.15060 * 1 2 3 31 31 H 1.09003 * 109.24144 * 290.15912 * 7 5 3 32 32 H 1.09001 * 109.24013 * 49.56159 * 7 5 3 33 33 H 1.08992 * 109.38465 * 309.82811 * 8 7 5 34 34 H 1.09001 * 109.29650 * 190.08878 * 8 7 5 35 35 H 1.08999 * 109.55039 * 176.49283 * 9 8 7 36 36 H 1.09008 * 109.62943 * 56.25359 * 9 8 7 37 37 H 1.08997 * 109.54854 * 303.65826 * 13 5 3 38 38 H 1.08999 * 109.54712 * 63.85547 * 13 5 3 39 39 H 1.09007 * 110.71754 * 35.22065 * 16 14 2 40 40 H 1.08991 * 110.72354 * 271.94408 * 16 14 2 41 41 H 1.08997 * 109.88360 * 218.39625 * 17 16 14 42 42 H 1.08993 * 109.87906 * 97.22902 * 17 16 14 43 43 H 0.97004 * 120.00142 * 180.02562 * 22 21 19 44 44 H 1.08994 * 110.36894 * 142.96729 * 27 18 17 45 45 H 1.09002 * 110.36802 * 265.18116 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5369 2.2149 0.1041 5 6 3.6403 1.1704 -0.1292 6 1 3.9467 0.3748 -0.8082 7 6 4.2671 0.9328 1.2416 8 6 5.7665 0.6812 1.1112 9 6 6.4797 1.9717 0.7013 10 16 5.8969 2.4723 -0.9450 11 8 6.1969 1.4347 -1.8684 12 8 6.3535 3.7921 -1.2071 13 6 4.0992 2.5195 -0.6874 14 6 2.1975 -1.2688 -0.0006 15 1 3.2606 -1.1043 0.1749 16 6 1.6071 -2.2523 1.0442 17 6 1.9755 -3.6343 0.4647 18 7 2.2010 -3.4569 -0.9773 19 6 2.5678 -4.4421 -1.8548 20 1 2.7090 -4.2092 -2.8999 21 6 2.7583 -5.7401 -1.4010 22 7 2.5869 -6.0238 -0.1273 23 14 3.2580 -7.0841 -2.5982 24 1 4.7394 -7.1567 -2.6709 25 1 2.7208 -8.3875 -2.1315 26 1 2.7110 -6.7767 -3.9441 27 6 1.9661 -2.0430 -1.3222 28 1 -0.3633 -0.0153 1.0276 29 1 -0.3634 0.8975 -0.5005 30 1 -0.3634 -0.8822 -0.5269 31 1 4.1030 1.8093 1.8685 32 1 3.7966 0.0664 1.7064 33 1 5.9404 -0.0842 0.3549 34 1 6.1590 0.3394 2.0689 35 1 7.5556 1.7999 0.6707 36 1 6.2563 2.7584 1.4221 37 1 3.5995 2.7102 -1.6372 38 1 3.8513 3.3104 0.0205 39 1 0.5251 -2.1387 1.1124 40 1 2.0734 -2.1058 2.0184 41 1 1.1569 -4.3351 0.6284 42 1 2.8841 -4.0049 0.9392 43 1 2.7203 -6.9307 0.1898 44 1 2.6746 -1.7153 -2.0829 45 1 0.9433 -1.9027 -1.6718 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033465541.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:17 Heat of formation + Delta-G solvation = -100.630210 kcal Electronic energy + Delta-G solvation = -27934.486540 eV Core-core repulsion = 24079.161971 eV Total energy + Delta-G solvation = -3855.324568 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 1.93 seconds Orbital eigenvalues (eV) -41.55858 -39.19399 -38.25209 -37.41017 -37.07763 -36.19549 -33.85279 -33.00314 -30.99449 -29.45262 -28.85033 -27.97884 -26.44014 -24.85255 -22.70516 -22.00762 -21.93294 -19.97192 -19.85285 -18.90184 -18.74148 -17.57373 -17.14288 -16.99097 -16.69772 -16.55950 -16.39769 -15.89351 -15.81942 -15.42098 -15.10512 -14.48053 -14.23302 -14.20866 -14.04430 -13.91113 -13.76001 -13.58923 -13.26378 -13.11838 -13.09443 -12.90910 -12.83407 -12.71031 -12.44073 -12.39803 -12.32113 -12.03951 -12.01465 -11.93440 -11.80804 -11.74264 -11.52954 -11.23214 -10.69875 -10.68275 -9.72474 -8.86967 -7.83383 -5.18540 -0.94703 1.45258 1.49837 1.50141 1.58334 1.67749 1.94332 2.52109 2.70214 2.93700 3.21985 3.36096 3.49014 3.57850 3.69368 3.75387 3.84497 3.90292 3.95192 4.02442 4.14950 4.29823 4.36906 4.47049 4.61822 4.62651 4.63018 4.67976 4.69444 4.82966 4.86231 4.91633 5.00476 5.04348 5.05954 5.18398 5.27228 5.43360 5.49565 5.67782 5.79846 6.20776 6.32766 7.03893 7.13194 7.78523 8.40648 9.26208 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.013629 B = 0.003823 C = 0.003318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2053.876573 B = 7323.066535 C = 8436.395760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.597 5.597 3 C 0.528 3.472 4 O -0.567 6.567 5 C -0.105 4.105 6 H 0.111 0.889 7 C -0.135 4.135 8 C -0.112 4.112 9 C -0.578 4.578 10 S 2.420 3.580 11 O -0.976 6.976 12 O -0.980 6.980 13 C -0.582 4.582 14 C 0.129 3.871 15 H 0.120 0.880 16 C -0.134 4.134 17 C 0.186 3.814 18 N -0.622 5.622 19 C -0.242 4.242 20 H 0.079 0.921 21 C -0.057 4.057 22 N -0.946 5.946 23 Si 0.972 3.028 24 H -0.285 1.285 25 H -0.295 1.295 26 H -0.273 1.273 27 C 0.120 3.880 28 H 0.068 0.932 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.105 0.895 32 H 0.095 0.905 33 H 0.080 0.920 34 H 0.120 0.880 35 H 0.156 0.844 36 H 0.167 0.833 37 H 0.131 0.869 38 H 0.160 0.840 39 H 0.076 0.924 40 H 0.093 0.907 41 H 0.009 0.991 42 H 0.022 0.978 43 H 0.247 0.753 44 H 0.043 0.957 45 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.010 16.522 7.189 18.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.327 5.327 3 C 0.316 3.684 4 O -0.447 6.447 5 C -0.127 4.127 6 H 0.129 0.871 7 C -0.173 4.173 8 C -0.151 4.151 9 C -0.711 4.711 10 S 2.607 3.393 11 O -0.974 6.974 12 O -0.977 6.977 13 C -0.711 4.711 14 C 0.025 3.975 15 H 0.138 0.862 16 C -0.173 4.173 17 C 0.060 3.940 18 N -0.349 5.349 19 C -0.371 4.371 20 H 0.097 0.903 21 C -0.250 4.250 22 N -0.595 5.595 23 Si 0.801 3.199 24 H -0.212 1.212 25 H -0.221 1.221 26 H -0.198 1.198 27 C -0.006 4.006 28 H 0.087 0.913 29 H 0.090 0.910 30 H 0.092 0.908 31 H 0.124 0.876 32 H 0.113 0.887 33 H 0.099 0.901 34 H 0.138 0.862 35 H 0.174 0.826 36 H 0.185 0.815 37 H 0.149 0.851 38 H 0.178 0.822 39 H 0.095 0.905 40 H 0.112 0.888 41 H 0.027 0.973 42 H 0.040 0.960 43 H 0.057 0.943 44 H 0.061 0.939 45 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 4.197 17.067 6.417 18.710 hybrid contribution -0.539 -1.328 -0.330 1.471 sum 3.658 15.738 6.088 17.267 Atomic orbital electron populations 1.21695 0.78696 1.02952 1.02666 1.47826 1.07515 1.05422 1.71986 1.20559 0.90006 0.82685 0.75185 1.90657 1.70889 1.31914 1.51201 1.21199 0.92753 0.97213 1.01546 0.87102 1.21836 0.95849 1.05993 0.93620 1.21361 0.92732 0.94712 1.06250 1.30068 1.12416 1.08865 1.19761 1.07762 0.78169 0.73858 0.79532 1.93569 1.83113 1.58924 1.61769 1.93545 1.79502 1.39285 1.85385 1.30142 1.24409 1.04633 1.11954 1.22440 0.97283 0.82008 0.95813 0.86222 1.23077 1.01553 0.94118 0.98581 1.20931 0.97671 0.92343 0.83012 1.44611 1.80915 1.04035 1.05323 1.19384 1.38745 0.88302 0.90711 0.90337 1.25510 1.02412 0.99273 0.97854 1.70133 1.56357 1.19027 1.13968 0.85181 0.77777 0.78590 0.78397 1.21233 1.22113 1.19840 1.21982 0.98251 0.84474 0.95913 0.91322 0.91018 0.90790 0.87630 0.88654 0.90121 0.86163 0.82624 0.81476 0.85057 0.82238 0.90548 0.88842 0.97297 0.95951 0.94328 0.93876 0.95685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.94 8.87 127.77 1.13 3.07 16 2 N -0.60 -15.18 2.91 -814.84 -2.37 -17.55 16 3 C 0.53 13.20 6.74 87.66 0.59 13.79 16 4 O -0.57 -16.97 15.78 -3.02 -0.05 -17.02 16 5 C -0.11 -2.02 1.50 -11.66 -0.02 -2.04 16 6 H 0.11 2.29 6.77 -2.39 -0.02 2.27 16 7 C -0.14 -1.75 4.49 30.32 0.14 -1.62 16 8 C -0.11 -1.18 5.73 30.47 0.17 -1.01 16 9 C -0.58 -5.08 6.35 71.99 0.46 -4.62 16 10 S 2.42 43.09 5.31 -56.49 -0.30 42.79 16 11 O -0.98 -26.07 17.94 -127.40 -2.29 -28.36 16 12 O -0.98 -24.00 18.10 -127.40 -2.31 -26.31 16 13 C -0.58 -9.96 5.07 72.00 0.36 -9.60 16 14 C 0.13 3.68 2.73 46.38 0.13 3.80 16 15 H 0.12 3.05 4.86 -2.39 -0.01 3.03 16 16 C -0.13 -4.09 6.45 31.78 0.21 -3.89 16 17 C 0.19 8.24 5.37 86.73 0.47 8.70 16 18 N -0.62 -29.66 3.39 -692.01 -2.35 -32.01 16 19 C -0.24 -13.03 10.28 84.03 0.86 -12.16 16 20 H 0.08 4.10 7.83 -2.91 -0.02 4.08 16 21 C -0.06 -3.11 5.49 84.86 0.47 -2.64 16 22 N -0.95 -54.06 10.31 21.65 0.22 -53.83 16 23 Si 0.97 44.45 29.55 68.60 2.03 46.48 16 24 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16 25 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 26 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 27 C 0.12 4.48 6.82 86.85 0.59 5.08 16 28 H 0.07 1.44 8.10 -2.39 -0.02 1.42 16 29 H 0.07 1.72 7.48 -2.39 -0.02 1.70 16 30 H 0.07 1.79 6.65 -2.39 -0.02 1.78 16 31 H 0.11 0.95 8.09 -2.39 -0.02 0.93 16 32 H 0.09 1.28 6.86 -2.39 -0.02 1.26 16 33 H 0.08 1.10 8.01 -2.39 -0.02 1.08 16 34 H 0.12 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.16 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.17 0.47 8.14 -2.38 -0.02 0.45 16 37 H 0.13 2.41 8.14 -2.39 -0.02 2.39 16 38 H 0.16 2.15 8.00 -2.39 -0.02 2.13 16 39 H 0.08 2.19 6.73 -2.38 -0.02 2.17 16 40 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 41 H 0.01 0.45 7.51 -2.39 -0.02 0.43 16 42 H 0.02 1.10 7.38 -2.39 -0.02 1.09 16 43 H 0.25 13.82 8.31 -92.71 -0.77 13.05 16 44 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 45 H 0.03 0.94 6.76 -2.39 -0.02 0.93 16 Total: -1.00 -78.61 358.69 -0.86 -79.47 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: 0.99 Total: 9.48 kcal Atomic # 6 Polarization: -8.70 SS G_CDS: 5.56 Total: -3.14 kcal Atomic # 7 Polarization: -98.89 SS G_CDS: -4.50 Total: -103.39 kcal Atomic # 8 Polarization: -67.05 SS G_CDS: -4.64 Total: -71.69 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.48 kcal Atomic # 16 Polarization: 43.09 SS G_CDS: -0.30 Total: 42.79 kcal Total: -78.61 -0.86 -79.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033465541.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.161 kcal (2) G-P(sol) polarization free energy of solvation -78.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.93 seconds