Wall clock time and date at job start Tue Mar 31 2020 05:33:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34779 * 120.00263 * 2 1 4 4 O 1.21278 * 119.99935 * 185.61303 * 3 2 1 5 5 C 1.50700 * 119.99842 * 5.60917 * 3 2 1 6 6 H 1.08999 * 109.37920 * 52.19147 * 5 3 2 7 7 C 1.52585 * 109.38342 * 171.97489 * 5 3 2 8 8 C 1.52587 * 110.64200 * 190.14681 * 7 5 3 9 9 C 1.53036 * 109.98577 * 290.01668 * 8 7 5 10 10 S 1.81671 * 109.00073 * 63.65064 * 9 8 7 11 11 O 1.42100 * 108.66270 * 60.02819 * 10 9 8 12 12 O 1.42097 * 108.66429 * 191.37303 * 10 9 8 13 13 C 1.53031 * 109.38942 * 292.50711 * 5 3 2 14 14 C 1.46500 * 119.99691 * 180.02562 * 2 1 3 15 15 H 1.09004 * 110.91880 * 173.63509 * 14 2 1 16 16 C 1.55161 * 111.00682 * 49.73387 * 14 2 1 17 17 C 1.54321 * 102.94026 * 277.42578 * 16 14 2 18 18 N 1.47284 * 107.30647 * 337.81904 * 17 16 14 19 19 C 1.36946 * 125.79368 * 178.92565 * 18 17 16 20 20 H 1.08000 * 120.00332 * 185.44038 * 19 18 17 21 21 C 1.38814 * 119.99475 * 5.44350 * 19 18 17 22 22 N 1.31610 * 120.00228 * 5.69802 * 21 19 18 23 23 Si 1.86806 * 119.99598 * 185.69944 * 21 19 18 24 24 H 1.48501 * 109.46742 * 84.99638 * 23 21 19 25 25 H 1.48499 * 109.46825 * 204.99605 * 23 21 19 26 26 H 1.48496 * 109.47201 * 324.99878 * 23 21 19 27 27 C 1.47424 * 108.56364 * 358.92128 * 18 17 16 28 28 H 1.09006 * 109.47159 * 215.47019 * 1 2 3 29 29 H 1.08999 * 109.46689 * 335.46710 * 1 2 3 30 30 H 1.08996 * 109.47548 * 95.46446 * 1 2 3 31 31 H 1.08995 * 109.24604 * 310.44707 * 7 5 3 32 32 H 1.09004 * 109.23982 * 69.88934 * 7 5 3 33 33 H 1.08994 * 109.38727 * 50.17387 * 8 7 5 34 34 H 1.08997 * 109.38372 * 169.86197 * 8 7 5 35 35 H 1.09005 * 109.55257 * 183.50547 * 9 8 7 36 36 H 1.09001 * 109.55307 * 303.79092 * 9 8 7 37 37 H 1.09008 * 109.54873 * 296.04982 * 13 5 3 38 38 H 1.09006 * 109.55120 * 56.33463 * 13 5 3 39 39 H 1.08993 * 110.71708 * 35.79285 * 16 14 2 40 40 H 1.09004 * 110.71788 * 158.88493 * 16 14 2 41 41 H 1.08996 * 109.88032 * 97.22351 * 17 16 14 42 42 H 1.08998 * 109.88433 * 218.39008 * 17 16 14 43 43 H 0.97003 * 119.99735 * 179.97438 * 22 21 19 44 44 H 1.08993 * 110.36868 * 265.26691 * 27 18 17 45 45 H 1.08998 * 110.36521 * 143.04689 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3473 1.1696 -0.1027 5 6 1.3909 2.4692 0.1276 6 1 0.7355 2.4260 0.9975 7 6 2.3879 3.6112 0.3008 8 6 1.6673 4.9012 0.6814 9 6 0.8580 5.4193 -0.5096 10 16 -0.4344 4.2095 -0.9176 11 8 -1.2795 4.0480 0.2133 12 8 -1.0060 4.5597 -2.1705 13 6 0.5484 2.6963 -1.1296 14 6 2.1974 -1.2688 -0.0006 15 1 3.2684 -1.0999 -0.1134 16 6 1.6647 -2.2181 -1.1063 17 6 0.4307 -2.8642 -0.4419 18 7 0.6058 -2.7464 1.0157 19 6 -0.2800 -3.1787 1.9664 20 1 -0.0988 -2.9665 3.0097 21 6 -1.4109 -3.8898 1.5889 22 7 -1.5755 -4.2458 0.3326 23 14 -2.6990 -4.3415 2.8642 24 1 -3.6431 -3.2083 3.0369 25 1 -3.4449 -5.5426 2.4104 26 1 -2.0328 -4.6324 4.1591 27 6 1.8960 -2.0845 1.2815 28 1 -0.3634 -0.8370 0.5964 29 1 -0.3633 0.9349 0.4267 30 1 -0.3634 -0.0979 -1.0229 31 1 3.0986 3.3518 1.0854 32 1 2.9257 3.7635 -0.6350 33 1 0.9961 4.7074 1.5180 34 1 2.4008 5.6523 0.9745 35 1 0.3967 6.3723 -0.2503 36 1 1.5166 5.5529 -1.3678 37 1 1.2043 2.8055 -1.9934 38 1 -0.1178 1.8469 -1.2807 39 1 1.3744 -1.6534 -1.9922 40 1 2.4098 -2.9727 -1.3585 41 1 -0.4735 -2.3392 -0.7498 42 1 0.3658 -3.9151 -0.7236 43 1 -2.3656 -4.7430 0.0690 44 1 2.6757 -2.8271 1.4506 45 1 1.8118 -1.4210 2.1421 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033465542.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:24 Heat of formation + Delta-G solvation = -68.595574 kcal Electronic energy + Delta-G solvation = -28097.241551 eV Core-core repulsion = 24243.306109 eV Total energy + Delta-G solvation = -3853.935442 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 1.78 seconds Orbital eigenvalues (eV) -40.38842 -38.00303 -37.29381 -36.40799 -36.25478 -34.49608 -32.72893 -31.68039 -29.31345 -28.19201 -27.89188 -26.17697 -24.96274 -24.01628 -22.13295 -20.30412 -20.16143 -19.15043 -18.73349 -17.41830 -16.95192 -16.83438 -16.74361 -16.01357 -15.60327 -15.52319 -14.78690 -14.67011 -14.50206 -14.07857 -13.79588 -13.74335 -13.35954 -13.07410 -12.80991 -12.38593 -12.25632 -12.15934 -12.08762 -12.02352 -11.81121 -11.78603 -11.71368 -11.57538 -11.25455 -11.15551 -10.99711 -10.93331 -10.80125 -10.62008 -10.31142 -10.18892 -9.98740 -9.69297 -9.39647 -8.75963 -8.30657 -6.87991 -5.78871 -3.14763 -0.27735 2.31991 2.67601 3.17286 3.36512 3.37571 3.42362 3.43445 3.64201 4.15557 4.18822 4.28097 4.40680 4.43917 4.49459 4.69735 4.90441 5.02494 5.18595 5.24324 5.29083 5.36635 5.38941 5.42737 5.49387 5.60004 5.66493 5.75496 5.78251 5.88836 5.90644 6.12071 6.28353 6.41836 6.46663 6.54978 6.65700 6.95718 7.39227 7.56174 7.67855 7.74096 8.16290 8.29560 9.12631 9.72967 10.38459 11.31384 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.015260 B = 0.003771 C = 0.003373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1834.389362 B = 7423.597367 C = 8299.605095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.050 3.950 2 N -0.583 5.583 3 C 0.523 3.477 4 O -0.549 6.549 5 C -0.095 4.095 6 H 0.116 0.884 7 C -0.121 4.121 8 C -0.110 4.110 9 C -0.605 4.605 10 S 2.419 3.581 11 O -0.930 6.930 12 O -0.941 6.941 13 C -0.609 4.609 14 C 0.122 3.878 15 H 0.100 0.900 16 C -0.154 4.154 17 C 0.169 3.831 18 N -0.602 5.602 19 C -0.233 4.233 20 H 0.078 0.922 21 C -0.004 4.004 22 N -0.918 5.918 23 Si 0.910 3.090 24 H -0.287 1.287 25 H -0.291 1.291 26 H -0.282 1.282 27 C 0.124 3.876 28 H 0.123 0.877 29 H 0.063 0.937 30 H 0.053 0.947 31 H 0.095 0.905 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.091 0.909 35 H 0.134 0.866 36 H 0.134 0.866 37 H 0.140 0.860 38 H 0.147 0.853 39 H 0.062 0.938 40 H 0.070 0.930 41 H 0.039 0.961 42 H 0.057 0.943 43 H 0.253 0.747 44 H 0.030 0.970 45 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.735 17.869 -3.037 19.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 N -0.314 5.314 3 C 0.309 3.691 4 O -0.428 6.428 5 C -0.117 4.117 6 H 0.134 0.866 7 C -0.159 4.159 8 C -0.148 4.148 9 C -0.734 4.734 10 S 2.600 3.400 11 O -0.927 6.927 12 O -0.938 6.938 13 C -0.737 4.737 14 C 0.018 3.982 15 H 0.118 0.882 16 C -0.193 4.193 17 C 0.045 3.955 18 N -0.329 5.329 19 C -0.361 4.361 20 H 0.096 0.904 21 C -0.201 4.201 22 N -0.565 5.565 23 Si 0.740 3.260 24 H -0.214 1.214 25 H -0.217 1.217 26 H -0.208 1.208 27 C -0.002 4.002 28 H 0.141 0.859 29 H 0.081 0.919 30 H 0.072 0.928 31 H 0.113 0.887 32 H 0.100 0.900 33 H 0.105 0.895 34 H 0.109 0.891 35 H 0.152 0.848 36 H 0.152 0.848 37 H 0.158 0.842 38 H 0.165 0.835 39 H 0.081 0.919 40 H 0.089 0.911 41 H 0.057 0.943 42 H 0.075 0.925 43 H 0.064 0.936 44 H 0.048 0.952 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 6.215 17.834 -3.176 19.151 hybrid contribution -0.054 -0.497 0.494 0.703 sum 6.161 17.337 -2.682 18.593 Atomic orbital electron populations 1.22443 0.78868 1.05248 1.02665 1.47661 1.07535 1.05253 1.70923 1.20114 0.87556 0.84785 0.76599 1.90657 1.14030 1.87210 1.50857 1.21026 0.98026 0.95385 0.97273 0.86574 1.21543 0.97834 0.91541 1.04965 1.21307 0.99999 0.97832 0.95650 1.30259 1.17625 1.16791 1.08716 1.08079 0.77645 0.78777 0.75459 1.93616 1.62091 1.85075 1.51915 1.93604 1.74808 1.82188 1.43219 1.30501 1.14290 1.22792 1.06139 1.22302 0.96127 0.82303 0.97503 0.88161 1.23209 1.00661 0.98107 0.97311 1.21339 0.92034 0.99491 0.82686 1.44635 1.17018 1.69094 1.02136 1.19023 0.99965 1.29020 0.88114 0.90441 1.24793 0.98972 0.99785 0.96503 1.69945 1.28699 1.42906 1.14992 0.86172 0.81631 0.77739 0.80424 1.21424 1.21706 1.20754 1.21916 0.89821 0.93906 0.94605 0.85904 0.91851 0.92846 0.88670 0.89952 0.89514 0.89089 0.84776 0.84788 0.84153 0.83510 0.91935 0.91150 0.94326 0.92493 0.93647 0.95206 0.93871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.80 7.08 59.85 0.42 1.22 16 2 N -0.58 -9.28 2.91 -171.47 -0.50 -9.78 16 3 C 0.52 7.61 6.98 -10.98 -0.08 7.53 16 4 O -0.55 -9.31 15.30 5.56 0.09 -9.23 16 5 C -0.10 -0.99 1.53 -91.97 -0.14 -1.13 16 6 H 0.12 1.14 7.09 -51.93 -0.37 0.78 16 7 C -0.12 -1.00 4.31 -27.16 -0.12 -1.11 16 8 C -0.11 -0.67 5.73 -26.92 -0.15 -0.82 16 9 C -0.60 -3.44 6.35 37.18 0.24 -3.20 16 10 S 2.42 22.04 5.31 -107.50 -0.57 21.47 16 11 O -0.93 -11.61 17.93 -57.81 -1.04 -12.65 16 12 O -0.94 -11.76 18.10 -57.81 -1.05 -12.81 16 13 C -0.61 -5.51 5.25 37.17 0.20 -5.32 16 14 C 0.12 2.12 3.66 -65.78 -0.24 1.88 16 15 H 0.10 1.72 7.03 -51.93 -0.37 1.35 16 16 C -0.15 -2.73 6.31 -24.90 -0.16 -2.89 16 17 C 0.17 3.77 4.31 -2.92 -0.01 3.75 16 18 N -0.60 -14.14 2.00 -169.86 -0.34 -14.48 16 19 C -0.23 -6.09 10.04 -15.05 -0.15 -6.24 16 20 H 0.08 1.99 7.83 -52.49 -0.41 1.58 16 21 C 0.00 -0.10 5.46 -17.43 -0.10 -0.19 16 22 N -0.92 -25.56 10.44 55.49 0.58 -24.98 16 23 Si 0.91 21.30 29.56 -169.99 -5.02 16.27 16 24 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 25 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 26 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 27 C 0.12 2.47 6.65 -2.53 -0.02 2.46 16 28 H 0.12 2.44 4.91 -51.93 -0.25 2.19 16 29 H 0.06 0.84 5.46 -51.93 -0.28 0.55 16 30 H 0.05 0.79 7.37 -51.93 -0.38 0.41 16 31 H 0.09 0.86 7.86 -51.93 -0.41 0.45 16 32 H 0.08 0.63 8.09 -51.93 -0.42 0.21 16 33 H 0.09 0.53 8.01 -51.93 -0.42 0.12 16 34 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.13 0.57 8.14 -51.92 -0.42 0.15 16 36 H 0.13 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.14 1.00 8.14 -51.92 -0.42 0.58 16 38 H 0.15 1.41 5.19 -51.92 -0.27 1.14 16 39 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 41 H 0.04 0.91 6.42 -51.93 -0.33 0.58 16 42 H 0.06 1.46 7.09 -51.93 -0.37 1.09 16 43 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 44 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 45 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 352.34 15.07 5.31 5.31 Total: -1.00 -34.41 352.34 -9.65 -44.06 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: -6.80 Total: 0.89 kcal Atomic # 6 Polarization: -3.77 SS G_CDS: -0.31 Total: -4.08 kcal Atomic # 7 Polarization: -48.99 SS G_CDS: -0.26 Total: -49.24 kcal Atomic # 8 Polarization: -32.69 SS G_CDS: -2.00 Total: -34.69 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.27 kcal Atomic # 16 Polarization: 22.04 SS G_CDS: -0.57 Total: 21.47 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -34.41 -9.65 -44.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033465542.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.534 kcal (2) G-P(sol) polarization free energy of solvation -34.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.78 seconds