Wall clock time and date at job start Tue Mar 31 2020 05:33:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34779 * 120.00263 * 2 1 4 4 O 1.21278 * 119.99935 * 185.61303 * 3 2 1 5 5 C 1.50700 * 119.99842 * 5.60917 * 3 2 1 6 6 H 1.08999 * 109.37920 * 52.19147 * 5 3 2 7 7 C 1.52585 * 109.38342 * 171.97489 * 5 3 2 8 8 C 1.52587 * 110.64200 * 190.14681 * 7 5 3 9 9 C 1.53036 * 109.98577 * 290.01668 * 8 7 5 10 10 S 1.81671 * 109.00073 * 63.65064 * 9 8 7 11 11 O 1.42100 * 108.66270 * 60.02819 * 10 9 8 12 12 O 1.42097 * 108.66429 * 191.37303 * 10 9 8 13 13 C 1.53031 * 109.38942 * 292.50711 * 5 3 2 14 14 C 1.46500 * 119.99691 * 180.02562 * 2 1 3 15 15 H 1.09004 * 110.91880 * 173.63509 * 14 2 1 16 16 C 1.55161 * 111.00682 * 49.73387 * 14 2 1 17 17 C 1.54321 * 102.94026 * 277.42578 * 16 14 2 18 18 N 1.47284 * 107.30647 * 337.81904 * 17 16 14 19 19 C 1.36946 * 125.79368 * 178.92565 * 18 17 16 20 20 H 1.08000 * 120.00332 * 185.44038 * 19 18 17 21 21 C 1.38814 * 119.99475 * 5.44350 * 19 18 17 22 22 N 1.31610 * 120.00228 * 5.69802 * 21 19 18 23 23 Si 1.86806 * 119.99598 * 185.69944 * 21 19 18 24 24 H 1.48501 * 109.46742 * 84.99638 * 23 21 19 25 25 H 1.48499 * 109.46825 * 204.99605 * 23 21 19 26 26 H 1.48496 * 109.47201 * 324.99878 * 23 21 19 27 27 C 1.47424 * 108.56364 * 358.92128 * 18 17 16 28 28 H 1.09006 * 109.47159 * 215.47019 * 1 2 3 29 29 H 1.08999 * 109.46689 * 335.46710 * 1 2 3 30 30 H 1.08996 * 109.47548 * 95.46446 * 1 2 3 31 31 H 1.08995 * 109.24604 * 310.44707 * 7 5 3 32 32 H 1.09004 * 109.23982 * 69.88934 * 7 5 3 33 33 H 1.08994 * 109.38727 * 50.17387 * 8 7 5 34 34 H 1.08997 * 109.38372 * 169.86197 * 8 7 5 35 35 H 1.09005 * 109.55257 * 183.50547 * 9 8 7 36 36 H 1.09001 * 109.55307 * 303.79092 * 9 8 7 37 37 H 1.09008 * 109.54873 * 296.04982 * 13 5 3 38 38 H 1.09006 * 109.55120 * 56.33463 * 13 5 3 39 39 H 1.08993 * 110.71708 * 35.79285 * 16 14 2 40 40 H 1.09004 * 110.71788 * 158.88493 * 16 14 2 41 41 H 1.08996 * 109.88032 * 97.22351 * 17 16 14 42 42 H 1.08998 * 109.88433 * 218.39008 * 17 16 14 43 43 H 0.97003 * 119.99735 * 179.97438 * 22 21 19 44 44 H 1.08993 * 110.36868 * 265.26691 * 27 18 17 45 45 H 1.08998 * 110.36521 * 143.04689 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3473 1.1696 -0.1027 5 6 1.3909 2.4692 0.1276 6 1 0.7355 2.4260 0.9975 7 6 2.3879 3.6112 0.3008 8 6 1.6673 4.9012 0.6814 9 6 0.8580 5.4193 -0.5096 10 16 -0.4344 4.2095 -0.9176 11 8 -1.2795 4.0480 0.2133 12 8 -1.0060 4.5597 -2.1705 13 6 0.5484 2.6963 -1.1296 14 6 2.1974 -1.2688 -0.0006 15 1 3.2684 -1.0999 -0.1134 16 6 1.6647 -2.2181 -1.1063 17 6 0.4307 -2.8642 -0.4419 18 7 0.6058 -2.7464 1.0157 19 6 -0.2800 -3.1787 1.9664 20 1 -0.0988 -2.9665 3.0097 21 6 -1.4109 -3.8898 1.5889 22 7 -1.5755 -4.2458 0.3326 23 14 -2.6990 -4.3415 2.8642 24 1 -3.6431 -3.2083 3.0369 25 1 -3.4449 -5.5426 2.4104 26 1 -2.0328 -4.6324 4.1591 27 6 1.8960 -2.0845 1.2815 28 1 -0.3634 -0.8370 0.5964 29 1 -0.3633 0.9349 0.4267 30 1 -0.3634 -0.0979 -1.0229 31 1 3.0986 3.3518 1.0854 32 1 2.9257 3.7635 -0.6350 33 1 0.9961 4.7074 1.5180 34 1 2.4008 5.6523 0.9745 35 1 0.3967 6.3723 -0.2503 36 1 1.5166 5.5529 -1.3678 37 1 1.2043 2.8055 -1.9934 38 1 -0.1178 1.8469 -1.2807 39 1 1.3744 -1.6534 -1.9922 40 1 2.4098 -2.9727 -1.3585 41 1 -0.4735 -2.3392 -0.7498 42 1 0.3658 -3.9151 -0.7236 43 1 -2.3656 -4.7430 0.0690 44 1 2.6757 -2.8271 1.4506 45 1 1.8118 -1.4210 2.1421 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033465542.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:21 Heat of formation + Delta-G solvation = -92.955541 kcal Electronic energy + Delta-G solvation = -28098.297879 eV Core-core repulsion = 24243.306109 eV Total energy + Delta-G solvation = -3854.991769 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 2.48 seconds Orbital eigenvalues (eV) -41.57754 -39.36332 -38.19441 -37.26088 -37.07893 -35.95153 -34.20584 -32.80297 -31.05172 -29.62037 -28.67641 -27.50011 -26.52261 -25.20751 -22.99450 -21.97638 -21.39570 -20.00483 -19.81370 -18.93408 -18.40415 -17.80581 -17.54426 -16.96438 -16.70210 -16.59251 -16.35510 -15.76823 -15.64610 -15.53221 -15.03864 -14.55046 -14.43719 -14.15168 -13.87007 -13.81242 -13.47786 -13.45077 -13.24613 -13.10311 -13.05355 -12.90249 -12.83113 -12.76226 -12.46627 -12.34642 -12.28162 -12.04259 -12.01523 -11.89503 -11.85161 -11.76515 -11.52090 -11.25488 -10.72171 -10.54859 -9.71412 -8.80044 -7.82953 -5.19229 -0.96399 1.45682 1.48686 1.49313 1.56795 1.73726 1.99403 2.50386 2.70198 2.94306 3.34052 3.36908 3.50218 3.56107 3.65930 3.77429 3.84598 3.90966 3.98486 4.07216 4.19768 4.28951 4.38264 4.43170 4.58435 4.60770 4.62097 4.68256 4.74189 4.81625 4.89215 4.96130 5.02317 5.07020 5.17614 5.22106 5.33041 5.46275 5.55260 5.68544 5.78589 6.20203 6.44465 7.09528 7.11175 7.77066 8.41960 9.25694 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.015260 B = 0.003771 C = 0.003373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1834.389362 B = 7423.597367 C = 8299.605095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 N -0.589 5.589 3 C 0.523 3.477 4 O -0.570 6.570 5 C -0.094 4.094 6 H 0.120 0.880 7 C -0.120 4.120 8 C -0.109 4.109 9 C -0.578 4.578 10 S 2.422 3.578 11 O -0.971 6.971 12 O -0.980 6.980 13 C -0.610 4.610 14 C 0.133 3.867 15 H 0.111 0.889 16 C -0.139 4.139 17 C 0.180 3.820 18 N -0.615 5.615 19 C -0.239 4.239 20 H 0.078 0.922 21 C -0.055 4.055 22 N -0.945 5.945 23 Si 0.969 3.031 24 H -0.285 1.285 25 H -0.297 1.297 26 H -0.273 1.273 27 C 0.123 3.877 28 H 0.082 0.918 29 H 0.086 0.914 30 H 0.060 0.940 31 H 0.087 0.913 32 H 0.093 0.907 33 H 0.086 0.914 34 H 0.118 0.882 35 H 0.158 0.842 36 H 0.163 0.837 37 H 0.162 0.838 38 H 0.137 0.863 39 H 0.078 0.922 40 H 0.083 0.917 41 H 0.018 0.982 42 H 0.018 0.982 43 H 0.246 0.754 44 H 0.033 0.967 45 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.185 20.517 -2.890 22.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 N -0.320 5.320 3 C 0.312 3.688 4 O -0.450 6.450 5 C -0.115 4.115 6 H 0.137 0.863 7 C -0.158 4.158 8 C -0.147 4.147 9 C -0.711 4.711 10 S 2.609 3.391 11 O -0.968 6.968 12 O -0.977 6.977 13 C -0.738 4.738 14 C 0.028 3.972 15 H 0.129 0.871 16 C -0.178 4.178 17 C 0.056 3.944 18 N -0.342 5.342 19 C -0.367 4.367 20 H 0.096 0.904 21 C -0.249 4.249 22 N -0.593 5.593 23 Si 0.798 3.202 24 H -0.212 1.212 25 H -0.224 1.224 26 H -0.199 1.199 27 C -0.003 4.003 28 H 0.101 0.899 29 H 0.105 0.895 30 H 0.079 0.921 31 H 0.106 0.894 32 H 0.112 0.888 33 H 0.104 0.896 34 H 0.136 0.864 35 H 0.176 0.824 36 H 0.181 0.819 37 H 0.180 0.820 38 H 0.155 0.845 39 H 0.097 0.903 40 H 0.102 0.898 41 H 0.036 0.964 42 H 0.036 0.964 43 H 0.056 0.944 44 H 0.051 0.949 45 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 7.657 20.483 -3.025 22.076 hybrid contribution -0.395 -1.277 0.488 1.423 sum 7.262 19.206 -2.536 20.689 Atomic orbital electron populations 1.22298 0.78948 1.04731 1.02544 1.47711 1.07421 1.05357 1.71511 1.20772 0.87442 0.85404 0.75210 1.90644 1.15113 1.87616 1.51626 1.21110 0.98456 0.93915 0.98062 0.86263 1.21587 0.97266 0.91501 1.05421 1.21364 1.00455 0.97305 0.95610 1.30078 1.15825 1.15411 1.09813 1.07762 0.78326 0.79151 0.73905 1.93561 1.64661 1.85876 1.52750 1.93553 1.76696 1.82719 1.44781 1.30496 1.14222 1.22695 1.06399 1.22100 0.96760 0.82772 0.95534 0.87114 1.23069 0.98750 0.98395 0.97581 1.21073 0.93517 0.97244 0.82594 1.44789 1.17967 1.69081 1.02320 1.19313 1.00473 1.28178 0.88773 0.90396 1.25481 1.00820 1.00437 0.98115 1.70142 1.28820 1.43857 1.16505 0.85234 0.79313 0.76968 0.78645 1.21182 1.22408 1.19858 1.22020 0.88243 0.94009 0.96008 0.89900 0.89514 0.92148 0.89423 0.88825 0.89578 0.86358 0.82427 0.81863 0.81992 0.84469 0.90301 0.89845 0.96358 0.96389 0.94420 0.94909 0.94076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 48. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.82 7.08 127.77 0.90 2.72 16 2 N -0.59 -18.18 2.91 -814.81 -2.37 -20.55 16 3 C 0.52 14.30 6.98 87.66 0.61 14.91 16 4 O -0.57 -18.17 15.30 -3.02 -0.05 -18.22 16 5 C -0.09 -1.75 1.53 -11.67 -0.02 -1.77 16 6 H 0.12 2.16 7.09 -2.39 -0.02 2.14 16 7 C -0.12 -1.57 4.31 30.32 0.13 -1.44 16 8 C -0.11 -0.87 5.73 30.47 0.17 -0.70 16 9 C -0.58 -4.08 6.35 71.99 0.46 -3.62 16 10 S 2.42 39.93 5.31 -56.49 -0.30 39.63 16 11 O -0.97 -23.52 17.93 -127.40 -2.28 -25.80 16 12 O -0.98 -23.48 18.10 -127.40 -2.31 -25.79 16 13 C -0.61 -9.86 5.25 71.99 0.38 -9.49 16 14 C 0.13 4.50 3.66 46.39 0.17 4.67 16 15 H 0.11 3.60 7.03 -2.39 -0.02 3.58 16 16 C -0.14 -4.86 6.31 31.78 0.20 -4.66 16 17 C 0.18 8.28 4.31 86.68 0.37 8.66 16 18 N -0.61 -29.53 2.00 -691.33 -1.38 -30.91 16 19 C -0.24 -12.71 10.04 84.03 0.84 -11.87 16 20 H 0.08 4.04 7.83 -2.91 -0.02 4.02 16 21 C -0.05 -2.98 5.46 84.86 0.46 -2.52 16 22 N -0.94 -54.40 10.44 21.65 0.23 -54.18 16 23 Si 0.97 44.58 29.56 68.60 2.03 46.60 16 24 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 25 H -0.30 -13.90 7.11 99.48 0.71 -13.19 16 26 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 27 C 0.12 4.89 6.65 86.86 0.58 5.47 16 28 H 0.08 3.37 4.91 -2.38 -0.01 3.36 16 29 H 0.09 2.26 5.46 -2.39 -0.01 2.25 16 30 H 0.06 1.79 7.37 -2.39 -0.02 1.77 16 31 H 0.09 1.33 7.86 -2.39 -0.02 1.31 16 32 H 0.09 1.04 8.09 -2.38 -0.02 1.02 16 33 H 0.09 0.77 8.01 -2.39 -0.02 0.75 16 34 H 0.12 0.46 8.14 -2.39 -0.02 0.44 16 35 H 0.16 0.57 8.14 -2.39 -0.02 0.55 16 36 H 0.16 0.35 8.14 -2.39 -0.02 0.33 16 37 H 0.16 1.86 8.14 -2.38 -0.02 1.84 16 38 H 0.14 2.51 5.19 -2.39 -0.01 2.50 16 39 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 40 H 0.08 2.71 8.14 -2.38 -0.02 2.69 16 41 H 0.02 0.90 6.42 -2.39 -0.02 0.89 16 42 H 0.02 0.96 7.09 -2.39 -0.02 0.94 16 43 H 0.25 13.96 8.31 -92.71 -0.77 13.19 16 44 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 45 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 Total: -1.00 -76.47 352.34 -0.17 -76.65 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: 0.99 Total: 12.21 kcal Atomic # 6 Polarization: -4.91 SS G_CDS: 5.27 Total: 0.36 kcal Atomic # 7 Polarization: -102.11 SS G_CDS: -3.53 Total: -105.64 kcal Atomic # 8 Polarization: -65.17 SS G_CDS: -4.64 Total: -69.81 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.60 kcal Atomic # 16 Polarization: 39.93 SS G_CDS: -0.30 Total: 39.63 kcal Total: -76.47 -0.17 -76.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033465542.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.308 kcal (2) G-P(sol) polarization free energy of solvation -76.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.48 seconds