Wall clock time and date at job start Tue Mar 31 2020 05:01:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46506 * 109.47185 * 2 1 4 4 C 1.34781 * 119.99876 * 274.25266 * 3 2 1 5 5 O 1.21281 * 119.99761 * 175.46257 * 4 3 2 6 6 C 1.50700 * 119.99884 * 355.46760 * 4 3 2 7 7 H 1.08994 * 110.01640 * 29.98361 * 6 4 3 8 8 C 1.53876 * 110.02627 * 151.36892 * 6 4 3 9 9 C 1.54168 * 108.70208 * 166.47081 * 8 6 4 10 10 S 1.82911 * 105.08695 * 332.08725 * 9 8 6 11 11 O 1.42094 * 109.35523 * 115.52376 * 10 9 8 12 12 O 1.42102 * 109.35402 * 248.59533 * 10 9 8 13 13 C 1.55051 * 110.02538 * 268.60570 * 6 4 3 14 14 C 1.46498 * 120.00138 * 94.24548 * 3 2 1 15 15 H 1.08998 * 110.78139 * 181.78506 * 14 3 2 16 16 C 1.55157 * 110.72313 * 305.03138 * 14 3 2 17 17 C 1.55132 * 101.48834 * 82.69230 * 16 14 3 18 18 N 1.47430 * 104.71863 * 37.29564 * 17 16 14 19 19 C 1.36939 * 125.64375 * 155.82056 * 18 17 16 20 20 H 1.08000 * 119.99519 * 199.16914 * 19 18 17 21 21 C 1.38809 * 120.00134 * 19.16182 * 19 18 17 22 22 N 1.31619 * 119.99798 * 27.49081 * 21 19 18 23 23 Si 1.86798 * 120.00094 * 207.48805 * 21 19 18 24 24 H 1.48504 * 109.47157 * 180.02562 * 23 21 19 25 25 H 1.48501 * 109.47091 * 299.99955 * 23 21 19 26 26 H 1.48493 * 109.47258 * 60.00241 * 23 21 19 27 27 C 1.47015 * 108.70453 * 335.55252 * 18 17 16 28 28 H 1.08994 * 109.47051 * 300.00124 * 1 2 3 29 29 H 1.08997 * 109.47187 * 60.00165 * 1 2 3 30 30 H 1.08997 * 109.46962 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47458 * 240.00189 * 2 1 3 32 32 H 1.08997 * 109.47187 * 119.99835 * 2 1 3 33 33 H 1.09001 * 109.64160 * 286.31849 * 8 6 4 34 34 H 1.08994 * 109.64879 * 46.74789 * 8 6 4 35 35 H 1.08996 * 110.32274 * 90.99320 * 9 8 6 36 36 H 1.09000 * 110.31566 * 213.08489 * 9 8 6 37 37 H 1.09000 * 110.79052 * 316.54754 * 13 6 4 38 38 H 1.08998 * 110.78638 * 80.00770 * 13 6 4 39 39 H 1.08998 * 111.00037 * 200.93451 * 16 14 3 40 40 H 1.09005 * 111.00028 * 324.74431 * 16 14 3 41 41 H 1.09000 * 110.49585 * 278.45693 * 17 16 14 42 42 H 1.08994 * 110.34282 * 156.05962 * 17 16 14 43 43 H 0.96997 * 120.00259 * 5.56830 * 22 21 19 44 44 H 1.09003 * 109.88189 * 120.70495 * 27 18 17 45 45 H 1.08999 * 109.88544 * 241.87101 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1614 2.0455 -1.1640 5 8 2.4865 3.2139 -1.1595 6 6 1.9172 1.3363 -2.4711 7 1 1.1724 0.5520 -2.3366 8 6 1.4390 2.3406 -3.5343 9 6 1.5255 1.6717 -4.9206 10 16 2.8678 0.4382 -4.7711 11 8 2.3284 -0.8665 -4.9318 12 8 3.9748 0.8487 -5.5619 13 6 3.2411 0.7261 -2.9995 14 6 2.3511 2.0406 1.2652 15 1 2.6676 3.0694 1.0936 16 6 1.1471 1.9923 2.2427 17 6 1.3041 0.5762 2.8565 18 7 2.7597 0.3868 2.9939 19 6 3.3744 -0.4599 3.8774 20 1 4.4153 -0.3168 4.1273 21 6 2.6596 -1.5020 4.4518 22 7 1.6348 -2.0270 3.8143 23 14 3.1522 -2.1592 6.1296 24 1 2.2374 -3.2630 6.5169 25 1 4.5457 -2.6690 6.0718 26 1 3.0653 -1.0685 7.1334 27 6 3.4418 1.2527 2.0211 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 0.4076 2.6276 -3.3296 34 1 2.0760 3.2249 -3.5159 35 1 0.5839 1.1789 -5.1625 36 1 1.7718 2.4109 -5.6828 37 1 4.0642 1.4319 -2.8876 38 1 3.4636 -0.2129 -2.4928 39 1 1.2331 2.7648 3.0069 40 1 0.2033 2.0812 1.7047 41 1 0.8848 -0.1773 2.1899 42 1 0.8218 0.5309 3.8329 43 1 1.4282 -1.7421 2.9104 44 1 4.1051 1.9438 2.5411 45 1 4.0128 0.6444 1.3197 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033893759.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:01:57 Heat of formation + Delta-G solvation = -68.555420 kcal Electronic energy + Delta-G solvation = -28099.935259 eV Core-core repulsion = 24246.001559 eV Total energy + Delta-G solvation = -3853.933701 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 2.17 seconds Orbital eigenvalues (eV) -40.60136 -38.18644 -37.34268 -36.37837 -35.95696 -35.04401 -32.59214 -30.71275 -30.50668 -29.23326 -27.40040 -26.07393 -24.50637 -23.47201 -22.62876 -20.50055 -20.29748 -19.18325 -18.79198 -17.90871 -17.67954 -17.03818 -16.61148 -16.12937 -15.70738 -15.24376 -14.70756 -14.56764 -14.43231 -14.33966 -13.83235 -13.72635 -13.28184 -13.17631 -12.93229 -12.69466 -12.46289 -12.45142 -12.31632 -12.20183 -12.09897 -11.97589 -11.77626 -11.38546 -11.21275 -11.19781 -10.87081 -10.77981 -10.74589 -10.67893 -10.45852 -10.34111 -10.05987 -9.62270 -9.60243 -8.55408 -8.47702 -7.01563 -6.18732 -3.25512 -0.31823 2.08729 2.49065 2.93280 3.26979 3.45562 3.49458 3.66098 3.66884 3.95602 4.16414 4.18667 4.41532 4.47564 4.51996 4.60351 4.98896 5.05197 5.11090 5.12954 5.17892 5.24784 5.28989 5.39086 5.47125 5.48571 5.53362 5.61095 5.65219 5.85494 5.90134 5.99007 6.05516 6.20051 6.37894 6.40203 6.51882 6.79126 6.87404 6.93472 7.46578 7.73248 8.10681 8.40950 8.92228 9.71712 10.26888 11.13536 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.020019 B = 0.003316 C = 0.003143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.315780 B = 8440.620614 C = 8906.641276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.083 3.917 3 N -0.585 5.585 4 C 0.532 3.468 5 O -0.543 6.543 6 C -0.115 4.115 7 H 0.117 0.883 8 C -0.100 4.100 9 C -0.590 4.590 10 S 2.392 3.608 11 O -0.932 6.932 12 O -0.936 6.936 13 C -0.579 4.579 14 C 0.125 3.875 15 H 0.104 0.896 16 C -0.148 4.148 17 C 0.130 3.870 18 N -0.600 5.600 19 C -0.338 4.338 20 H 0.063 0.937 21 C -0.022 4.022 22 N -0.914 5.914 23 Si 1.064 2.936 24 H -0.285 1.285 25 H -0.293 1.293 26 H -0.294 1.294 27 C 0.125 3.875 28 H 0.072 0.928 29 H 0.050 0.950 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.115 0.885 33 H 0.096 0.904 34 H 0.101 0.899 35 H 0.139 0.861 36 H 0.142 0.858 37 H 0.146 0.854 38 H 0.146 0.854 39 H 0.075 0.925 40 H 0.069 0.931 41 H 0.044 0.956 42 H 0.048 0.952 43 H 0.266 0.734 44 H 0.035 0.965 45 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.625 7.295 -15.232 17.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.039 4.039 3 N -0.316 5.316 4 C 0.318 3.682 5 O -0.421 6.421 6 C -0.138 4.138 7 H 0.135 0.865 8 C -0.138 4.138 9 C -0.720 4.720 10 S 2.575 3.425 11 O -0.929 6.929 12 O -0.933 6.933 13 C -0.708 4.708 14 C 0.022 3.978 15 H 0.122 0.878 16 C -0.187 4.187 17 C 0.005 3.995 18 N -0.328 5.328 19 C -0.466 4.466 20 H 0.081 0.919 21 C -0.224 4.224 22 N -0.554 5.554 23 Si 0.894 3.106 24 H -0.211 1.211 25 H -0.220 1.220 26 H -0.221 1.221 27 C -0.001 4.001 28 H 0.090 0.910 29 H 0.069 0.931 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.133 0.867 33 H 0.115 0.885 34 H 0.120 0.880 35 H 0.157 0.843 36 H 0.160 0.840 37 H 0.164 0.836 38 H 0.164 0.836 39 H 0.094 0.906 40 H 0.087 0.913 41 H 0.062 0.938 42 H 0.066 0.934 43 H 0.078 0.922 44 H 0.053 0.947 45 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -3.396 6.125 -14.615 16.207 hybrid contribution 0.124 1.469 -0.547 1.573 sum -3.271 7.595 -15.163 17.271 Atomic orbital electron populations 1.22402 0.95623 1.02968 1.02401 1.22003 0.94727 0.82162 1.05013 1.47924 1.63633 1.14321 1.05678 1.19842 0.77245 0.86529 0.84610 1.90675 1.48251 1.15998 1.87141 1.22066 0.96401 0.99859 0.95473 0.86509 1.21791 1.05366 0.98772 0.87909 1.30498 1.19100 1.17060 1.05313 1.09041 0.77765 0.77123 0.78548 1.93640 1.79431 1.34978 1.84867 1.93623 1.50092 1.83633 1.65962 1.30717 1.04723 1.11387 1.24016 1.22159 0.96295 0.97173 0.82186 0.87841 1.23259 0.97009 1.00243 0.98186 1.21944 0.86717 0.91869 0.98982 1.44559 1.00500 1.47705 1.40067 1.19713 0.97764 1.08627 1.20452 0.91918 1.25740 0.97873 0.93624 1.05118 1.70834 1.31696 1.39495 1.13416 0.83528 0.75322 0.75976 0.75813 1.21056 1.22007 1.22120 1.21686 0.93602 0.93404 0.91395 0.90964 0.93145 0.90989 0.91125 0.86662 0.88549 0.88033 0.84300 0.84009 0.83601 0.83624 0.90606 0.91266 0.93847 0.93356 0.92239 0.94672 0.95333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.16 9.04 37.16 0.34 -1.83 16 2 C 0.08 1.18 4.75 -4.04 -0.02 1.16 16 3 N -0.58 -8.55 2.44 -164.02 -0.40 -8.95 16 4 C 0.53 7.18 6.75 -10.98 -0.07 7.10 16 5 O -0.54 -8.76 15.33 5.56 0.09 -8.67 16 6 C -0.12 -1.09 2.08 -90.23 -0.19 -1.28 16 7 H 0.12 0.92 5.55 -51.93 -0.29 0.63 16 8 C -0.10 -0.74 5.55 -25.66 -0.14 -0.89 16 9 C -0.59 -3.35 7.26 37.77 0.27 -3.08 16 10 S 2.39 20.42 6.10 -107.50 -0.66 19.77 16 11 O -0.93 -10.99 18.14 -57.73 -1.05 -12.04 16 12 O -0.94 -11.26 18.15 -57.73 -1.05 -12.31 16 13 C -0.58 -5.00 6.58 38.24 0.25 -4.74 16 14 C 0.13 2.10 3.58 -66.09 -0.24 1.86 16 15 H 0.10 1.73 7.01 -51.93 -0.36 1.37 16 16 C -0.15 -2.48 6.13 -24.46 -0.15 -2.63 16 17 C 0.13 2.72 4.19 -2.41 -0.01 2.71 16 18 N -0.60 -14.13 2.85 -169.93 -0.48 -14.61 16 19 C -0.34 -9.09 10.01 -15.06 -0.15 -9.24 16 20 H 0.06 1.71 7.96 -52.49 -0.42 1.29 16 21 C -0.02 -0.59 5.11 -17.43 -0.09 -0.67 16 22 N -0.91 -25.80 13.00 55.49 0.72 -25.08 16 23 Si 1.06 24.49 30.00 -169.99 -5.10 19.39 16 24 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 25 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 26 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 27 C 0.13 2.51 6.28 -3.07 -0.02 2.49 16 28 H 0.07 0.98 4.87 -51.93 -0.25 0.73 16 29 H 0.05 0.50 7.29 -51.93 -0.38 0.12 16 30 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 31 H 0.07 0.82 6.07 -51.93 -0.31 0.51 16 32 H 0.12 2.10 4.86 -51.93 -0.25 1.84 16 33 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.10 0.83 7.43 -51.93 -0.39 0.45 16 35 H 0.14 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.14 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.15 1.23 8.10 -51.93 -0.42 0.81 16 38 H 0.15 1.15 7.70 -51.93 -0.40 0.75 16 39 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 40 H 0.07 1.04 6.52 -51.93 -0.34 0.70 16 41 H 0.04 0.91 2.81 -51.93 -0.15 0.76 16 42 H 0.05 1.15 8.06 -51.93 -0.42 0.73 16 43 H 0.27 7.33 6.08 -40.82 -0.25 7.08 16 44 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.03 0.59 8.04 -51.93 -0.42 0.18 16 LS Contribution 351.86 15.07 5.30 5.30 Total: -1.00 -35.55 351.86 -9.22 -44.77 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: -6.38 Total: 1.47 kcal Atomic # 6 Polarization: -8.82 SS G_CDS: -0.22 Total: -9.04 kcal Atomic # 7 Polarization: -48.48 SS G_CDS: -0.16 Total: -48.64 kcal Atomic # 8 Polarization: -31.01 SS G_CDS: -2.01 Total: -33.02 kcal Atomic # 14 Polarization: 24.49 SS G_CDS: -5.10 Total: 19.39 kcal Atomic # 16 Polarization: 20.42 SS G_CDS: -0.66 Total: 19.77 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -35.55 -9.22 -44.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033893759.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.784 kcal (2) G-P(sol) polarization free energy of solvation -35.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.17 seconds