Wall clock time and date at job start Tue Mar 31 2020 05:01:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46506 * 109.47279 * 2 1 4 4 C 1.34780 * 119.99961 * 83.74539 * 3 2 1 5 5 O 1.21279 * 119.99793 * 185.02344 * 4 3 2 6 6 C 1.50694 * 119.99903 * 5.03088 * 4 3 2 7 7 H 1.09004 * 110.28522 * 332.90361 * 6 4 3 8 8 C 1.54165 * 110.31798 * 210.78713 * 6 4 3 9 9 C 1.53883 * 108.70618 * 213.18588 * 8 6 4 10 10 C 1.55048 * 106.62073 * 47.18291 * 9 8 6 11 11 S 1.82919 * 110.32258 * 95.12377 * 6 4 3 12 12 O 1.42095 * 109.35895 * 234.42437 * 11 6 4 13 13 O 1.42099 * 109.35197 * 7.63186 * 11 6 4 14 14 C 1.46504 * 120.00136 * 263.75451 * 3 2 1 15 15 H 1.08994 * 110.78151 * 183.04091 * 14 3 2 16 16 C 1.55159 * 110.71818 * 59.80295 * 14 3 2 17 17 C 1.54906 * 101.61693 * 277.11973 * 16 14 3 18 18 N 1.47466 * 104.81405 * 323.04941 * 17 16 14 19 19 C 1.36942 * 125.62774 * 204.05292 * 18 17 16 20 20 H 1.07996 * 119.99780 * 180.02562 * 19 18 17 21 21 C 1.38806 * 120.00290 * 0.02562 * 19 18 17 22 22 N 1.31625 * 120.00071 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00339 * 180.02562 * 21 19 18 24 24 H 1.48493 * 109.47142 * 90.00215 * 23 21 19 25 25 H 1.48500 * 109.46985 * 210.00285 * 23 21 19 26 26 H 1.48500 * 109.46879 * 330.00216 * 23 21 19 27 27 C 1.47023 * 108.72223 * 24.06430 * 18 17 16 28 28 H 1.08996 * 109.46967 * 294.86298 * 1 2 3 29 29 H 1.09002 * 109.46888 * 54.86034 * 1 2 3 30 30 H 1.08998 * 109.47022 * 174.85589 * 1 2 3 31 31 H 1.08997 * 109.47250 * 240.00113 * 2 1 3 32 32 H 1.08999 * 109.46996 * 119.99438 * 2 1 3 33 33 H 1.08998 * 109.64917 * 333.04183 * 8 6 4 34 34 H 1.09003 * 109.64422 * 93.33593 * 8 6 4 35 35 H 1.08997 * 110.02609 * 166.47098 * 9 8 6 36 36 H 1.08998 * 110.02834 * 287.84405 * 9 8 6 37 37 H 1.08999 * 110.79165 * 75.83021 * 10 9 8 38 38 H 1.08998 * 110.78946 * 199.10876 * 10 9 8 39 39 H 1.09001 * 111.00815 * 35.21698 * 16 14 3 40 40 H 1.09001 * 111.00049 * 159.02847 * 16 14 3 41 41 H 1.09003 * 110.36725 * 81.85233 * 17 16 14 42 42 H 1.09003 * 110.37225 * 204.17025 * 17 16 14 43 43 H 0.96998 * 120.00215 * 179.97438 * 22 21 19 44 44 H 1.08998 * 109.88038 * 239.55998 * 27 18 17 45 45 H 1.08999 * 110.00590 * 118.46829 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.1231 2.0590 1.1603 5 8 2.4399 3.2297 1.1522 6 6 1.8469 1.3621 2.4675 7 1 1.1509 0.5369 2.3162 8 6 1.2787 2.3597 3.4964 9 6 1.7650 1.9531 4.8986 10 6 3.2874 1.6847 4.7796 11 16 3.4063 0.7538 3.2051 12 8 3.2905 -0.6373 3.4707 13 8 4.5065 1.2433 2.4506 14 6 2.3927 2.0259 -1.2612 15 1 2.7838 3.0274 -1.0825 16 6 1.1841 2.0739 -2.2330 17 6 1.2352 0.6602 -2.8643 18 7 2.6724 0.3622 -3.0059 19 6 3.2201 -0.5193 -3.8995 20 1 4.2894 -0.6682 -3.9247 21 6 2.4008 -1.2213 -4.7728 22 7 1.0975 -1.0394 -4.7424 23 14 3.1477 -2.4243 -5.9912 24 1 3.2239 -3.7721 -5.3726 25 1 2.3002 -2.4857 -7.2090 26 1 4.5129 -1.9712 -6.3604 27 6 3.4199 1.1676 -2.0292 28 1 -0.3633 0.4321 0.9324 29 1 -0.3633 0.5915 -0.8404 30 1 -0.3633 -1.0235 -0.0921 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5137 0.8900 33 1 1.6294 3.3653 3.2642 34 1 0.1894 2.3374 3.4656 35 1 1.5828 2.7621 5.6060 36 1 1.2503 1.0494 5.2247 37 1 3.8417 2.6212 4.7180 38 1 3.6406 1.0821 5.6163 39 1 0.2515 2.2257 -1.6896 40 1 1.3224 2.8453 -2.9906 41 1 0.7605 -0.0669 -2.2054 42 1 0.7495 0.6626 -3.8402 43 1 0.5250 -1.5297 -5.3530 44 1 4.1295 1.8132 -2.5466 45 1 3.9502 0.5151 -1.3356 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034044911.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:01:27 Heat of formation + Delta-G solvation = -59.743152 kcal Electronic energy + Delta-G solvation = -28517.105824 eV Core-core repulsion = 24663.554252 eV Total energy + Delta-G solvation = -3853.551572 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 2.12 seconds Orbital eigenvalues (eV) -40.34394 -37.88920 -37.27702 -36.36883 -35.97870 -34.92101 -32.43388 -30.63509 -30.50465 -29.16821 -27.14820 -25.93523 -24.53235 -23.17984 -22.13253 -20.89984 -20.18531 -19.17648 -18.55398 -17.68124 -17.27549 -16.91492 -16.83443 -16.07382 -15.43801 -14.92441 -14.72420 -14.56257 -14.30211 -14.24845 -13.81317 -13.65747 -13.16487 -12.91513 -12.72768 -12.39435 -12.35075 -12.24607 -12.21257 -12.18224 -11.95534 -11.65539 -11.54727 -11.31189 -11.09462 -10.99140 -10.96526 -10.86941 -10.63458 -10.58697 -10.33035 -10.12850 -9.87798 -9.66166 -9.55239 -8.67780 -8.40652 -6.86360 -5.68082 -3.09784 -0.33726 2.15386 2.66127 2.91782 3.33139 3.39571 3.45330 3.46749 3.74260 3.99537 4.11851 4.31423 4.35958 4.47926 4.60416 4.78215 5.06883 5.11395 5.18294 5.32865 5.35962 5.42933 5.46670 5.48472 5.54361 5.61679 5.69601 5.72738 5.85493 5.95898 6.07584 6.29236 6.36464 6.38663 6.59117 6.60796 6.72259 6.95465 7.45020 7.55186 7.61655 7.82103 8.14737 8.32740 9.19475 9.79682 10.43643 11.35468 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.021146 B = 0.003716 C = 0.003550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.785584 B = 7533.340527 C = 7886.255297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.083 3.917 3 N -0.581 5.581 4 C 0.544 3.456 5 O -0.527 6.527 6 C -0.597 4.597 7 H 0.162 0.838 8 C -0.103 4.103 9 C -0.119 4.119 10 C -0.587 4.587 11 S 2.393 3.607 12 O -0.925 6.925 13 O -0.914 6.914 14 C 0.126 3.874 15 H 0.103 0.897 16 C -0.156 4.156 17 C 0.139 3.861 18 N -0.603 5.603 19 C -0.222 4.222 20 H 0.078 0.922 21 C -0.009 4.009 22 N -0.922 5.922 23 Si 0.914 3.086 24 H -0.289 1.289 25 H -0.291 1.291 26 H -0.282 1.282 27 C 0.124 3.876 28 H 0.047 0.953 29 H 0.077 0.923 30 H 0.070 0.930 31 H 0.123 0.877 32 H 0.059 0.941 33 H 0.103 0.897 34 H 0.095 0.905 35 H 0.102 0.898 36 H 0.088 0.912 37 H 0.142 0.858 38 H 0.139 0.861 39 H 0.063 0.937 40 H 0.072 0.928 41 H 0.029 0.971 42 H 0.106 0.894 43 H 0.252 0.748 44 H 0.037 0.963 45 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.833 5.890 19.903 20.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.040 4.040 3 N -0.312 5.312 4 C 0.328 3.672 5 O -0.404 6.404 6 C -0.707 4.707 7 H 0.180 0.820 8 C -0.141 4.141 9 C -0.157 4.157 10 C -0.717 4.717 11 S 2.573 3.427 12 O -0.922 6.922 13 O -0.911 6.911 14 C 0.023 3.977 15 H 0.121 0.879 16 C -0.195 4.195 17 C 0.015 3.985 18 N -0.330 5.330 19 C -0.350 4.350 20 H 0.096 0.904 21 C -0.204 4.204 22 N -0.571 5.571 23 Si 0.745 3.255 24 H -0.216 1.216 25 H -0.217 1.217 26 H -0.207 1.207 27 C -0.003 4.003 28 H 0.066 0.934 29 H 0.096 0.904 30 H 0.089 0.911 31 H 0.141 0.859 32 H 0.077 0.923 33 H 0.122 0.878 34 H 0.114 0.886 35 H 0.120 0.880 36 H 0.107 0.893 37 H 0.160 0.840 38 H 0.158 0.842 39 H 0.081 0.919 40 H 0.090 0.910 41 H 0.047 0.953 42 H 0.124 0.876 43 H 0.062 0.938 44 H 0.055 0.945 45 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -2.043 5.724 19.330 20.263 hybrid contribution -0.331 -0.354 -0.268 0.553 sum -2.374 5.370 19.063 19.946 Atomic orbital electron populations 1.22361 0.95274 1.03188 1.02202 1.21998 0.95155 0.82129 1.04712 1.47891 1.62953 1.14281 1.06119 1.18867 0.78047 0.86639 0.83608 1.90665 1.48105 1.15253 1.86392 1.30749 1.24216 1.11055 1.04659 0.82023 1.21968 1.03229 0.99349 0.89591 1.22230 0.90702 1.04651 0.98117 1.30654 1.04912 1.15512 1.20631 1.09303 0.77235 0.76764 0.79383 1.93641 1.86255 1.27736 1.84583 1.93670 1.47289 1.81604 1.68538 1.22230 0.96719 0.96905 0.81819 0.87901 1.23415 0.96242 1.02072 0.97804 1.22254 0.85906 0.88630 1.01714 1.44568 1.02121 1.47441 1.38862 1.19091 0.92009 1.14260 1.09676 0.90438 1.24753 0.95522 1.00339 0.99833 1.69791 1.02145 1.44843 1.40299 0.86079 0.77974 0.80910 0.80581 1.21643 1.21718 1.20717 1.21664 0.93512 0.93496 0.91608 0.93420 0.90411 0.91076 0.85944 0.92294 0.87814 0.88602 0.87985 0.89348 0.83973 0.84247 0.91873 0.90979 0.95323 0.87648 0.93774 0.94548 0.95153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.36 8.99 37.16 0.33 -2.03 16 2 C 0.08 1.32 4.64 -4.04 -0.02 1.30 16 3 N -0.58 -9.82 2.45 -164.03 -0.40 -10.22 16 4 C 0.54 8.53 6.13 -10.99 -0.07 8.47 16 5 O -0.53 -9.42 15.13 5.56 0.08 -9.33 16 6 C -0.60 -6.72 2.77 -27.28 -0.08 -6.79 16 7 H 0.16 1.52 5.30 -51.93 -0.28 1.25 16 8 C -0.10 -0.81 5.90 -25.66 -0.15 -0.96 16 9 C -0.12 -0.65 6.48 -25.19 -0.16 -0.81 16 10 C -0.59 -4.04 7.31 38.24 0.28 -3.76 16 11 S 2.39 28.55 5.95 -107.50 -0.64 27.91 16 12 O -0.93 -13.01 18.14 -57.71 -1.05 -14.06 16 13 O -0.91 -14.94 17.29 -57.71 -1.00 -15.93 16 14 C 0.13 2.36 3.57 -66.09 -0.24 2.13 16 15 H 0.10 1.92 7.03 -51.93 -0.36 1.55 16 16 C -0.16 -2.92 6.14 -24.58 -0.15 -3.08 16 17 C 0.14 3.16 4.78 -2.51 -0.01 3.15 16 18 N -0.60 -14.87 2.89 -170.04 -0.49 -15.36 16 19 C -0.22 -6.04 10.27 -15.06 -0.15 -6.20 16 20 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 21 C -0.01 -0.25 5.49 -17.43 -0.10 -0.34 16 22 N -0.92 -25.82 10.09 55.49 0.56 -25.26 16 23 Si 0.91 21.78 29.55 -169.99 -5.02 16.76 16 24 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 25 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 26 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 27 C 0.12 2.66 6.15 -3.07 -0.02 2.64 16 28 H 0.05 0.53 7.12 -51.93 -0.37 0.16 16 29 H 0.08 1.18 5.02 -51.93 -0.26 0.92 16 30 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.12 2.39 4.97 -51.93 -0.26 2.13 16 32 H 0.06 0.82 6.62 -51.93 -0.34 0.48 16 33 H 0.10 0.94 6.89 -51.93 -0.36 0.59 16 34 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.09 0.36 8.14 -51.93 -0.42 -0.07 16 37 H 0.14 0.86 8.14 -51.93 -0.42 0.43 16 38 H 0.14 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.06 1.07 6.82 -51.93 -0.35 0.72 16 40 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 41 H 0.03 0.65 4.21 -51.93 -0.22 0.43 16 42 H 0.11 2.76 5.88 -51.93 -0.31 2.45 16 43 H 0.25 6.89 8.31 -40.82 -0.34 6.55 16 44 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.03 0.67 7.92 -51.93 -0.41 0.26 16 LS Contribution 350.48 15.07 5.28 5.28 Total: -1.00 -34.49 350.48 -9.65 -44.15 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -6.45 Total: 2.36 kcal Atomic # 6 Polarization: -5.76 SS G_CDS: -0.53 Total: -6.29 kcal Atomic # 7 Polarization: -50.50 SS G_CDS: -0.33 Total: -50.84 kcal Atomic # 8 Polarization: -37.36 SS G_CDS: -1.96 Total: -39.32 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Atomic # 16 Polarization: 28.55 SS G_CDS: -0.64 Total: 27.91 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -34.49 -9.65 -44.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034044911.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.597 kcal (2) G-P(sol) polarization free energy of solvation -34.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.13 seconds