Wall clock time and date at job start Tue Mar 31 2020 05:01:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46500 * 109.46957 * 2 1 4 4 C 1.34773 * 120.00308 * 264.92947 * 3 2 1 5 5 O 1.21282 * 120.00295 * 179.97438 * 4 3 2 6 6 C 1.50707 * 120.00037 * 359.97438 * 4 3 2 7 7 H 1.09004 * 110.27964 * 325.70612 * 6 4 3 8 8 C 1.54169 * 110.31774 * 87.81707 * 6 4 3 9 9 C 1.54012 * 108.62943 * 146.73282 * 8 6 4 10 10 C 1.55045 * 106.69996 * 312.94870 * 9 8 6 11 11 S 1.82914 * 110.32069 * 203.58874 * 6 4 3 12 12 O 1.42096 * 109.35627 * 352.37278 * 11 6 4 13 13 O 1.42105 * 109.34904 * 125.44366 * 11 6 4 14 14 C 1.46499 * 120.00039 * 84.92468 * 3 2 1 15 15 H 1.08998 * 110.64100 * 359.13798 * 14 3 2 16 16 C 1.55162 * 110.87305 * 122.38538 * 14 3 2 17 17 C 1.54908 * 101.58136 * 153.93917 * 16 14 3 18 18 N 1.47422 * 104.83366 * 322.98827 * 17 16 14 19 19 C 1.36936 * 125.65030 * 204.09624 * 18 17 16 20 20 H 1.08002 * 120.00081 * 163.95423 * 19 18 17 21 21 C 1.38814 * 119.99895 * 343.95164 * 19 18 17 22 22 N 1.31614 * 119.99991 * 351.52291 * 21 19 18 23 23 Si 1.86798 * 119.99978 * 171.53190 * 21 19 18 24 24 H 1.48492 * 109.47715 * 84.98062 * 23 21 19 25 25 H 1.48505 * 109.47164 * 204.98461 * 23 21 19 26 26 H 1.48510 * 109.47044 * 324.97899 * 23 21 19 27 27 C 1.47024 * 108.70206 * 24.12919 * 18 17 16 28 28 H 1.08995 * 109.47556 * 294.03854 * 1 2 3 29 29 H 1.08999 * 109.47211 * 54.04029 * 1 2 3 30 30 H 1.09008 * 109.46987 * 174.03851 * 1 2 3 31 31 H 1.09002 * 109.47412 * 240.00559 * 2 1 3 32 32 H 1.09000 * 109.47357 * 119.99532 * 2 1 3 33 33 H 1.09003 * 109.64959 * 266.67135 * 8 6 4 34 34 H 1.09004 * 109.64612 * 26.96244 * 8 6 4 35 35 H 1.09004 * 110.02788 * 193.61764 * 9 8 6 36 36 H 1.08999 * 109.95427 * 72.24515 * 9 8 6 37 37 H 1.08992 * 110.79437 * 284.11980 * 10 9 8 38 38 H 1.09000 * 110.79169 * 160.65752 * 10 9 8 39 39 H 1.09002 * 111.00104 * 272.01355 * 16 14 3 40 40 H 1.08996 * 111.00411 * 35.86304 * 16 14 3 41 41 H 1.09003 * 110.36677 * 204.15164 * 17 16 14 42 42 H 1.08997 * 110.36737 * 81.82899 * 17 16 14 43 43 H 0.96996 * 120.00035 * 180.02562 * 22 21 19 44 44 H 1.08996 * 109.88250 * 239.52427 * 27 18 17 45 45 H 1.09006 * 109.88105 * 118.35708 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3401 1.9822 -1.1626 5 8 2.7439 3.1259 -1.1626 6 6 2.1983 1.2332 -2.4626 7 1 2.4250 0.1770 -2.3168 8 6 0.7728 1.4021 -3.0250 9 6 0.8487 1.4114 -4.5632 10 6 1.9977 2.3791 -4.9468 11 16 3.3022 1.9504 -3.7326 12 8 3.8870 3.1434 -3.2288 13 8 4.1305 0.9276 -4.2684 14 6 2.1566 2.1093 1.2637 15 1 1.8415 1.4876 2.1018 16 6 3.6151 2.6001 1.4622 17 6 3.4072 3.8290 2.3821 18 7 2.1577 4.4498 1.9059 19 6 1.8062 5.7631 2.0695 20 1 1.0100 6.1871 1.4755 21 6 2.4730 6.5495 2.9990 22 7 3.3245 5.9980 3.8374 23 14 2.1616 8.3903 3.0599 24 1 0.9666 8.6629 3.8980 25 1 3.3432 9.0731 3.6456 26 1 1.9278 8.8986 1.6842 27 6 1.3511 3.4251 1.2269 28 1 -0.3634 0.4186 0.9385 29 1 -0.3633 0.6035 -0.8318 30 1 -0.3633 -1.0222 -0.1067 31 1 1.8934 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 0.1469 0.5741 -2.6920 34 1 0.3494 2.3432 -2.6738 35 1 -0.0934 1.7663 -4.9813 36 1 1.0666 0.4088 -4.9310 37 1 1.6854 3.4167 -4.8289 38 1 2.3393 2.1901 -5.9645 39 1 4.2193 1.8396 1.9568 40 1 4.0610 2.8942 0.5121 41 1 4.2397 4.5251 2.2792 42 1 3.3021 3.5127 3.4198 43 1 3.7902 6.5474 4.4871 44 1 1.1705 3.7203 0.1933 45 1 0.4029 3.2940 1.7483 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034044913.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:01:33 Heat of formation + Delta-G solvation = -57.271804 kcal Electronic energy + Delta-G solvation = -28418.893374 eV Core-core repulsion = 24565.448967 eV Total energy + Delta-G solvation = -3853.444407 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 1.79 seconds Orbital eigenvalues (eV) -40.34522 -37.22014 -37.07492 -36.28449 -35.79857 -35.47382 -32.39215 -30.60849 -30.38455 -28.82432 -27.26445 -25.83111 -24.26696 -23.48471 -22.06972 -21.16197 -20.14249 -19.22220 -18.41318 -17.56250 -17.07061 -16.68799 -16.44504 -15.60837 -15.34876 -15.09760 -14.62888 -14.54767 -14.37950 -14.07503 -13.80132 -13.75432 -13.31611 -12.94833 -12.74972 -12.47989 -12.33069 -12.24147 -12.09926 -12.01046 -11.94210 -11.71999 -11.48457 -11.46348 -11.33120 -10.83447 -10.77311 -10.73278 -10.72249 -10.41800 -10.39421 -9.97342 -9.89414 -9.59909 -9.19348 -8.46854 -8.35188 -6.58959 -5.62787 -2.95548 -0.14714 2.36461 2.63177 2.94508 3.48143 3.49124 3.53603 3.56922 3.80333 4.06607 4.20273 4.31382 4.41933 4.56032 4.62302 4.64508 4.88382 5.02664 5.10562 5.14681 5.28733 5.35627 5.42630 5.44775 5.53212 5.55317 5.58381 5.61321 5.66385 5.81514 5.91472 6.05656 6.27857 6.56527 6.57955 6.68670 6.80620 7.20142 7.48563 7.60453 7.73246 7.89595 8.29179 8.41098 9.32306 9.94537 10.64364 11.51187 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.015358 B = 0.004065 C = 0.003677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1822.716247 B = 6885.742994 C = 7612.056009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.101 3.899 3 N -0.596 5.596 4 C 0.524 3.476 5 O -0.466 6.466 6 C -0.602 4.602 7 H 0.156 0.844 8 C -0.103 4.103 9 C -0.117 4.117 10 C -0.592 4.592 11 S 2.402 3.598 12 O -0.885 6.885 13 O -0.939 6.939 14 C 0.136 3.864 15 H 0.091 0.909 16 C -0.160 4.160 17 C 0.181 3.819 18 N -0.592 5.592 19 C -0.221 4.221 20 H 0.071 0.929 21 C -0.006 4.006 22 N -0.918 5.918 23 Si 0.909 3.091 24 H -0.289 1.289 25 H -0.290 1.290 26 H -0.281 1.281 27 C 0.134 3.866 28 H 0.063 0.937 29 H 0.061 0.939 30 H 0.064 0.936 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.099 0.901 34 H 0.091 0.909 35 H 0.100 0.900 36 H 0.087 0.913 37 H 0.142 0.858 38 H 0.136 0.864 39 H 0.055 0.945 40 H 0.081 0.919 41 H 0.060 0.940 42 H 0.029 0.971 43 H 0.252 0.748 44 H 0.038 0.962 45 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.848 -17.465 -15.761 24.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.022 4.022 3 N -0.330 5.330 4 C 0.307 3.693 5 O -0.337 6.337 6 C -0.711 4.711 7 H 0.174 0.826 8 C -0.141 4.141 9 C -0.156 4.156 10 C -0.722 4.722 11 S 2.580 3.420 12 O -0.882 6.882 13 O -0.936 6.936 14 C 0.033 3.967 15 H 0.109 0.891 16 C -0.200 4.200 17 C 0.056 3.944 18 N -0.318 5.318 19 C -0.350 4.350 20 H 0.089 0.911 21 C -0.203 4.203 22 N -0.565 5.565 23 Si 0.739 3.261 24 H -0.216 1.216 25 H -0.216 1.216 26 H -0.207 1.207 27 C 0.007 3.993 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.095 0.905 32 H 0.098 0.902 33 H 0.117 0.883 34 H 0.110 0.890 35 H 0.118 0.882 36 H 0.106 0.894 37 H 0.160 0.840 38 H 0.154 0.846 39 H 0.074 0.926 40 H 0.100 0.900 41 H 0.078 0.922 42 H 0.047 0.953 43 H 0.062 0.938 44 H 0.056 0.944 45 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges -5.576 -16.538 -15.624 23.425 hybrid contribution -1.130 0.536 0.179 1.263 sum -6.706 -16.002 -15.445 23.229 Atomic orbital electron populations 1.22310 0.95775 1.01950 1.03286 1.21633 0.94699 0.82880 1.03009 1.47919 1.65078 1.13719 1.06316 1.19077 0.79927 0.86912 0.83429 1.91075 1.41802 1.15320 1.85514 1.30858 1.14637 1.13561 1.12051 0.82620 1.21992 0.92203 1.05819 0.94091 1.22218 0.99494 0.99130 0.94742 1.30700 1.15739 1.09616 1.16115 1.09078 0.77795 0.76667 0.78439 1.93758 1.73201 1.44230 1.77036 1.93612 1.62859 1.59438 1.77647 1.22214 0.98079 0.93426 0.82947 0.89071 1.23449 0.94418 0.99651 1.02465 1.21238 0.89958 0.90029 0.93208 1.44192 1.16429 1.05191 1.66026 1.18929 1.16747 0.84247 1.15088 0.91141 1.24849 1.00206 0.98361 0.96863 1.69938 1.31174 1.33866 1.21571 0.86187 0.77017 0.85301 0.77552 1.21621 1.21645 1.20710 1.21496 0.92928 0.87824 0.97071 0.91812 0.92032 0.91727 0.90461 0.90225 0.88304 0.89007 0.88187 0.89429 0.83998 0.84559 0.92585 0.90039 0.92201 0.95259 0.93826 0.94415 0.96636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.37 10.20 37.16 0.38 -0.99 16 2 C 0.10 0.92 6.00 -4.04 -0.02 0.89 16 3 N -0.60 -8.36 2.54 -164.02 -0.42 -8.78 16 4 C 0.52 7.99 5.82 -10.98 -0.06 7.93 16 5 O -0.47 -9.63 10.69 -18.01 -0.19 -9.82 16 6 C -0.60 -6.05 2.88 -27.27 -0.08 -6.13 16 7 H 0.16 1.09 6.05 -51.93 -0.31 0.78 16 8 C -0.10 -0.72 5.33 -25.59 -0.14 -0.86 16 9 C -0.12 -0.61 6.48 -25.12 -0.16 -0.78 16 10 C -0.59 -4.26 7.31 38.24 0.28 -3.98 16 11 S 2.40 28.31 5.91 -107.50 -0.64 27.67 16 12 O -0.89 -15.56 15.48 -66.98 -1.04 -16.60 16 13 O -0.94 -12.80 18.15 -57.73 -1.05 -13.85 16 14 C 0.14 2.43 3.44 -66.09 -0.23 2.20 16 15 H 0.09 1.45 7.94 -51.93 -0.41 1.03 16 16 C -0.16 -3.30 6.42 -24.58 -0.16 -3.46 16 17 C 0.18 4.66 5.36 -2.53 -0.01 4.65 16 18 N -0.59 -16.17 3.39 -170.07 -0.58 -16.74 16 19 C -0.22 -6.57 10.21 -15.06 -0.15 -6.73 16 20 H 0.07 2.05 7.84 -52.49 -0.41 1.64 16 21 C -0.01 -0.18 5.39 -17.43 -0.09 -0.28 16 22 N -0.92 -28.13 10.90 55.49 0.61 -27.52 16 23 Si 0.91 23.17 29.56 -169.99 -5.03 18.15 16 24 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 25 H -0.29 -7.42 7.11 56.52 0.40 -7.01 16 26 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 27 C 0.13 2.97 6.47 -3.06 -0.02 2.95 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.48 5.96 -51.93 -0.31 0.17 16 30 H 0.06 0.36 8.14 -51.92 -0.42 -0.06 16 31 H 0.08 0.51 5.66 -51.93 -0.29 0.22 16 32 H 0.08 0.65 8.06 -51.93 -0.42 0.24 16 33 H 0.10 0.47 6.66 -51.93 -0.35 0.12 16 34 H 0.09 0.77 7.85 -51.93 -0.41 0.37 16 35 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.09 0.31 8.14 -51.93 -0.42 -0.12 16 37 H 0.14 1.01 8.14 -51.93 -0.42 0.58 16 38 H 0.14 0.72 8.14 -51.93 -0.42 0.29 16 39 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.08 1.84 6.06 -51.93 -0.31 1.52 16 41 H 0.06 1.73 7.33 -51.93 -0.38 1.35 16 42 H 0.03 0.79 7.94 -51.93 -0.41 0.38 16 43 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 44 H 0.04 0.88 6.05 -51.93 -0.31 0.57 16 45 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 LS Contribution 356.11 15.07 5.37 5.37 Total: -1.00 -40.12 356.11 -10.29 -50.40 By element: Atomic # 1 Polarization: 3.15 SS G_CDS: -6.85 Total: -3.70 kcal Atomic # 6 Polarization: -4.11 SS G_CDS: -0.47 Total: -4.58 kcal Atomic # 7 Polarization: -52.65 SS G_CDS: -0.39 Total: -53.04 kcal Atomic # 8 Polarization: -37.99 SS G_CDS: -2.28 Total: -40.27 kcal Atomic # 14 Polarization: 23.17 SS G_CDS: -5.03 Total: 18.15 kcal Atomic # 16 Polarization: 28.31 SS G_CDS: -0.64 Total: 27.67 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -40.12 -10.29 -50.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034044913.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.869 kcal (2) G-P(sol) polarization free energy of solvation -40.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.80 seconds