Wall clock time and date at job start Tue Mar 31 2020 05:01:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46503 * 109.47184 * 2 1 4 4 C 1.34774 * 120.00053 * 84.15864 * 3 2 1 5 5 O 1.21281 * 119.99966 * 184.90160 * 4 3 2 6 6 C 1.50699 * 120.00184 * 4.90146 * 4 3 2 7 7 H 1.09000 * 110.28071 * 331.30794 * 6 4 3 8 8 C 1.54167 * 110.31946 * 209.19288 * 6 4 3 9 9 C 1.53869 * 108.70498 * 213.18919 * 8 6 4 10 10 C 1.55043 * 106.62686 * 47.18010 * 9 8 6 11 11 S 1.82913 * 110.31881 * 93.42472 * 6 4 3 12 12 O 1.42096 * 109.35552 * 234.42509 * 11 6 4 13 13 O 1.42107 * 109.35424 * 7.62894 * 11 6 4 14 14 C 1.46496 * 119.99768 * 264.16383 * 3 2 1 15 15 H 1.08998 * 110.91928 * 172.25068 * 14 3 2 16 16 C 1.55160 * 111.00377 * 296.14987 * 14 3 2 17 17 C 1.54323 * 102.93921 * 153.57567 * 16 14 3 18 18 N 1.47020 * 107.27622 * 337.81062 * 17 16 14 19 19 C 1.36934 * 125.65028 * 178.97619 * 18 17 16 20 20 H 1.08001 * 120.00469 * 179.97438 * 19 18 17 21 21 C 1.38820 * 120.00116 * 359.97355 * 19 18 17 22 22 N 1.31614 * 119.99603 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00117 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.47030 * 359.97438 * 23 21 19 25 25 H 1.48494 * 109.47234 * 120.00190 * 23 21 19 26 26 H 1.48500 * 109.47013 * 240.00289 * 23 21 19 27 27 C 1.47423 * 108.70285 * 358.93993 * 18 17 16 28 28 H 1.08993 * 109.47205 * 65.14446 * 1 2 3 29 29 H 1.08999 * 109.47445 * 185.14845 * 1 2 3 30 30 H 1.09006 * 109.47274 * 305.15035 * 1 2 3 31 31 H 1.08995 * 109.47337 * 239.99875 * 2 1 3 32 32 H 1.08999 * 109.47182 * 119.99583 * 2 1 3 33 33 H 1.09002 * 109.64762 * 333.04515 * 8 6 4 34 34 H 1.09007 * 109.64191 * 93.46677 * 8 6 4 35 35 H 1.08997 * 110.02902 * 166.47497 * 9 8 6 36 36 H 1.09004 * 110.02651 * 287.84223 * 9 8 6 37 37 H 1.09003 * 110.78479 * 75.83210 * 10 9 8 38 38 H 1.08992 * 110.79432 * 199.10382 * 10 9 8 39 39 H 1.08999 * 110.71966 * 35.22022 * 16 14 3 40 40 H 1.08993 * 110.72263 * 271.93758 * 16 14 3 41 41 H 1.09004 * 109.88004 * 97.23215 * 17 16 14 42 42 H 1.09005 * 109.88190 * 218.38608 * 17 16 14 43 43 H 0.97002 * 119.99692 * 179.97438 * 22 21 19 44 44 H 1.09000 * 110.36678 * 142.96635 * 27 18 17 45 45 H 1.08999 * 110.36468 * 265.29525 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1310 2.0562 1.1611 5 8 2.4498 3.2263 1.1539 6 6 1.8608 1.3569 2.4684 7 1 1.1408 0.5514 2.3243 8 6 1.3380 2.3613 3.5147 9 6 1.8394 1.9318 4.9046 10 6 3.3517 1.6248 4.7553 11 16 3.4167 0.7002 3.1709 12 8 3.2676 -0.6892 3.4286 13 8 4.5153 1.1651 2.3986 14 6 2.3841 2.0288 -1.2621 15 1 2.5954 3.0871 -1.1096 16 6 3.5888 1.3113 -1.9266 17 6 3.3945 1.6255 -3.4250 18 7 1.9747 1.9524 -3.6220 19 6 1.3954 2.3093 -4.8103 20 1 0.3391 2.5307 -4.8512 21 6 2.1657 2.3864 -5.9626 22 7 3.4528 2.1161 -5.9129 23 14 1.3756 2.8739 -7.5835 24 1 -0.0731 3.1236 -7.3726 25 1 2.0215 4.1082 -8.0976 26 1 1.5499 1.7767 -8.5689 27 6 1.2779 1.8316 -2.3285 28 1 -0.3633 0.4319 -0.9324 29 1 -0.3634 -1.0235 0.0922 30 1 -0.3634 0.5917 0.8403 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.7105 3.3592 3.2829 34 1 0.2480 2.3659 3.5056 35 1 1.6914 2.7399 5.6209 36 1 1.3073 1.0393 5.2340 37 1 3.9291 2.5471 4.6900 38 1 3.7045 1.0071 5.5811 39 1 3.5436 0.2369 -1.7489 40 1 4.5306 1.7239 -1.5651 41 1 4.0138 2.4765 -3.7086 42 1 3.6611 0.7546 -4.0239 43 1 3.9911 2.1696 -6.7181 44 1 0.5171 2.6063 -2.2337 45 1 0.8286 0.8433 -2.2306 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034044915.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:01:38 Heat of formation + Delta-G solvation = -66.336577 kcal Electronic energy + Delta-G solvation = -28001.454899 eV Core-core repulsion = 24147.617414 eV Total energy + Delta-G solvation = -3853.837485 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 2.32 seconds Orbital eigenvalues (eV) -40.33782 -37.73313 -37.37218 -36.45704 -36.04515 -35.42059 -32.43366 -30.72202 -30.56234 -28.97839 -27.46522 -25.97010 -24.34802 -23.56727 -22.14091 -20.89019 -20.10697 -19.29839 -18.69949 -17.82053 -17.32350 -17.00691 -16.82613 -16.19179 -15.53111 -14.95601 -14.73544 -14.59294 -14.37531 -14.12754 -14.05896 -13.78837 -13.24691 -12.98413 -12.80595 -12.52041 -12.45222 -12.34566 -12.32605 -12.29763 -12.21629 -11.95894 -11.65188 -11.40554 -11.16430 -11.03748 -10.93843 -10.85516 -10.81859 -10.65707 -10.29319 -10.07706 -9.88620 -9.78237 -9.68512 -8.63244 -8.48719 -6.84759 -5.71401 -3.05974 -0.42975 2.05206 2.57577 2.78509 3.23058 3.40345 3.45580 3.48260 3.64391 3.91367 4.02275 4.24762 4.26448 4.50042 4.53541 4.66961 4.82387 5.00511 5.07638 5.11842 5.27051 5.31693 5.41632 5.42642 5.44708 5.59738 5.62942 5.67717 5.72210 5.75202 5.82292 6.08582 6.23377 6.30265 6.52195 6.57375 6.67800 6.88846 7.40975 7.55757 7.62425 7.82760 8.05639 8.24601 9.20626 9.80652 10.45614 11.39999 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.026875 B = 0.003126 C = 0.003063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.599401 B = 8955.241795 C = 9140.427555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.092 3.908 3 N -0.589 5.589 4 C 0.544 3.456 5 O -0.518 6.518 6 C -0.597 4.597 7 H 0.161 0.839 8 C -0.104 4.104 9 C -0.119 4.119 10 C -0.583 4.583 11 S 2.390 3.610 12 O -0.927 6.927 13 O -0.912 6.912 14 C 0.123 3.877 15 H 0.109 0.891 16 C -0.155 4.155 17 C 0.179 3.821 18 N -0.603 5.603 19 C -0.229 4.229 20 H 0.079 0.921 21 C -0.007 4.007 22 N -0.920 5.920 23 Si 0.913 3.087 24 H -0.280 1.280 25 H -0.290 1.290 26 H -0.291 1.291 27 C 0.130 3.870 28 H 0.076 0.924 29 H 0.069 0.931 30 H 0.055 0.945 31 H 0.098 0.902 32 H 0.065 0.935 33 H 0.105 0.895 34 H 0.096 0.904 35 H 0.102 0.898 36 H 0.088 0.912 37 H 0.143 0.857 38 H 0.139 0.861 39 H 0.060 0.940 40 H 0.067 0.933 41 H 0.050 0.950 42 H 0.046 0.954 43 H 0.252 0.748 44 H 0.041 0.959 45 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.466 -4.092 24.051 24.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.031 4.031 3 N -0.321 5.321 4 C 0.328 3.672 5 O -0.394 6.394 6 C -0.707 4.707 7 H 0.179 0.821 8 C -0.142 4.142 9 C -0.157 4.157 10 C -0.714 4.714 11 S 2.570 3.430 12 O -0.924 6.924 13 O -0.909 6.909 14 C 0.020 3.980 15 H 0.127 0.873 16 C -0.194 4.194 17 C 0.054 3.946 18 N -0.330 5.330 19 C -0.358 4.358 20 H 0.096 0.904 21 C -0.203 4.203 22 N -0.567 5.567 23 Si 0.744 3.256 24 H -0.205 1.205 25 H -0.217 1.217 26 H -0.218 1.218 27 C 0.003 3.997 28 H 0.094 0.906 29 H 0.088 0.912 30 H 0.074 0.926 31 H 0.117 0.883 32 H 0.083 0.917 33 H 0.123 0.877 34 H 0.115 0.885 35 H 0.121 0.879 36 H 0.106 0.894 37 H 0.161 0.839 38 H 0.158 0.842 39 H 0.079 0.921 40 H 0.086 0.914 41 H 0.068 0.932 42 H 0.064 0.936 43 H 0.063 0.937 44 H 0.059 0.941 45 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -3.581 -4.082 23.407 24.029 hybrid contribution -1.000 0.550 -0.570 1.275 sum -4.581 -3.532 22.837 23.558 Atomic orbital electron populations 1.22397 0.95055 1.02545 1.03567 1.21682 0.95250 0.82652 1.03546 1.47894 1.63698 1.13929 1.06556 1.18858 0.78101 0.86725 0.83506 1.90701 1.47229 1.15220 1.86216 1.30752 1.24217 1.11272 1.04414 0.82121 1.21982 1.03550 0.99273 0.89422 1.22233 0.90732 1.04501 0.98257 1.30654 1.04920 1.15361 1.20463 1.09413 0.77260 0.76792 0.79543 1.93636 1.86156 1.27754 1.84818 1.93685 1.47379 1.82182 1.67695 1.22567 0.96460 0.98241 0.80746 0.87279 1.23293 0.97310 0.99510 0.99331 1.21163 0.85627 1.00085 0.87696 1.44402 1.04764 1.80831 1.02980 1.19082 0.93163 1.39404 0.84107 0.90352 1.24818 0.95808 1.01755 0.97960 1.69971 1.04662 1.54753 1.27317 0.86029 0.78200 0.77762 0.83654 1.20526 1.21716 1.21757 1.21864 0.93426 0.98415 0.86025 0.90558 0.91159 0.92553 0.88339 0.91673 0.87682 0.88545 0.87910 0.89368 0.83906 0.84236 0.92110 0.91404 0.93193 0.93557 0.93726 0.94099 0.95410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.84 9.66 37.16 0.36 -1.48 16 2 C 0.09 1.13 4.75 -4.04 -0.02 1.11 16 3 N -0.59 -9.09 2.52 -163.67 -0.41 -9.50 16 4 C 0.54 8.08 6.16 -10.99 -0.07 8.01 16 5 O -0.52 -9.30 15.10 5.56 0.08 -9.21 16 6 C -0.60 -5.93 2.70 -27.27 -0.07 -6.00 16 7 H 0.16 1.20 5.50 -51.93 -0.29 0.91 16 8 C -0.10 -0.74 5.89 -25.67 -0.15 -0.89 16 9 C -0.12 -0.56 6.48 -25.20 -0.16 -0.72 16 10 C -0.58 -3.53 7.32 38.24 0.28 -3.25 16 11 S 2.39 25.25 5.96 -107.50 -0.64 24.61 16 12 O -0.93 -11.36 18.15 -57.71 -1.05 -12.41 16 13 O -0.91 -13.85 17.29 -57.71 -1.00 -14.84 16 14 C 0.12 2.33 3.42 -65.78 -0.23 2.11 16 15 H 0.11 2.28 7.04 -51.93 -0.37 1.92 16 16 C -0.16 -3.08 6.51 -24.89 -0.16 -3.25 16 17 C 0.18 4.42 5.37 -3.07 -0.02 4.40 16 18 N -0.60 -15.43 3.39 -170.07 -0.58 -16.01 16 19 C -0.23 -6.39 10.28 -15.06 -0.15 -6.55 16 20 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 21 C -0.01 -0.20 5.49 -17.43 -0.10 -0.29 16 22 N -0.92 -27.12 10.31 55.49 0.57 -26.54 16 23 Si 0.91 22.15 29.55 -169.99 -5.02 17.13 16 24 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 25 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 26 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 27 C 0.13 2.67 6.27 -2.53 -0.02 2.66 16 28 H 0.08 0.93 6.06 -51.93 -0.31 0.61 16 29 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.51 7.34 -51.93 -0.38 0.13 16 31 H 0.10 1.28 6.41 -51.93 -0.33 0.95 16 32 H 0.06 0.67 6.63 -51.93 -0.34 0.32 16 33 H 0.10 0.92 6.87 -51.93 -0.36 0.56 16 34 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 37 H 0.14 0.78 8.14 -51.93 -0.42 0.35 16 38 H 0.14 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.06 1.10 6.73 -51.93 -0.35 0.75 16 40 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 41 H 0.05 1.37 7.38 -51.93 -0.38 0.99 16 42 H 0.05 1.24 7.51 -51.93 -0.39 0.85 16 43 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 44 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 45 H 0.03 0.54 5.06 -51.93 -0.26 0.28 16 LS Contribution 357.70 15.07 5.39 5.39 Total: -1.00 -36.58 357.70 -9.85 -46.43 By element: Atomic # 1 Polarization: 5.80 SS G_CDS: -6.69 Total: -0.90 kcal Atomic # 6 Polarization: -3.64 SS G_CDS: -0.51 Total: -4.14 kcal Atomic # 7 Polarization: -51.64 SS G_CDS: -0.42 Total: -52.05 kcal Atomic # 8 Polarization: -34.50 SS G_CDS: -1.96 Total: -36.46 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Atomic # 16 Polarization: 25.25 SS G_CDS: -0.64 Total: 24.61 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -36.58 -9.85 -46.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034044915.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.903 kcal (2) G-P(sol) polarization free energy of solvation -36.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.32 seconds