Wall clock time and date at job start Tue Mar 31 2020 05:01:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46501 * 109.47038 * 2 1 4 4 C 1.34778 * 120.00055 * 268.04151 * 3 2 1 5 5 O 1.21276 * 120.00129 * 180.02562 * 4 3 2 6 6 C 1.50705 * 119.99816 * 0.02562 * 4 3 2 7 7 H 1.08998 * 110.28574 * 325.70626 * 6 4 3 8 8 C 1.54169 * 110.31678 * 87.81463 * 6 4 3 9 9 C 1.54017 * 108.63093 * 146.73008 * 8 6 4 10 10 C 1.55047 * 106.69682 * 312.94971 * 9 8 6 11 11 S 1.82917 * 110.31829 * 203.58279 * 6 4 3 12 12 O 1.42101 * 109.35382 * 352.37568 * 11 6 4 13 13 O 1.42098 * 109.34916 * 125.58059 * 11 6 4 14 14 C 1.46499 * 119.99872 * 88.04499 * 3 2 1 15 15 H 1.08994 * 110.64399 * 231.50301 * 14 3 2 16 16 C 1.55159 * 110.71612 * 108.36519 * 14 3 2 17 17 C 1.55388 * 101.36651 * 277.03813 * 16 14 3 18 18 N 1.47421 * 104.87544 * 323.02294 * 17 16 14 19 19 C 1.36938 * 125.64767 * 204.16687 * 18 17 16 20 20 H 1.08005 * 120.00260 * 179.97438 * 19 18 17 21 21 C 1.38817 * 120.00139 * 359.96021 * 19 18 17 22 22 N 1.31618 * 119.99753 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 120.00107 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.46865 * 359.97438 * 23 21 19 25 25 H 1.48494 * 109.47321 * 119.99547 * 23 21 19 26 26 H 1.48505 * 109.46564 * 239.99624 * 23 21 19 27 27 C 1.47022 * 108.70774 * 24.12752 * 18 17 16 28 28 H 1.08996 * 109.47353 * 293.87798 * 1 2 3 29 29 H 1.09007 * 109.46783 * 53.87429 * 1 2 3 30 30 H 1.09001 * 109.47660 * 173.87102 * 1 2 3 31 31 H 1.09000 * 109.46604 * 120.00053 * 2 1 3 32 32 H 1.09004 * 109.47153 * 239.99563 * 2 1 3 33 33 H 1.09004 * 109.64806 * 266.66868 * 8 6 4 34 34 H 1.09008 * 109.64488 * 26.95663 * 8 6 4 35 35 H 1.09007 * 110.02806 * 193.61680 * 9 8 6 36 36 H 1.08995 * 109.95288 * 72.24465 * 9 8 6 37 37 H 1.08996 * 110.79377 * 284.11899 * 10 9 8 38 38 H 1.08997 * 110.79041 * 160.65622 * 10 9 8 39 39 H 1.08997 * 111.00785 * 35.21691 * 16 14 3 40 40 H 1.09006 * 111.00190 * 159.06639 * 16 14 3 41 41 H 1.09004 * 110.34391 * 204.17204 * 17 16 14 42 42 H 1.08997 * 110.43954 * 81.92039 * 17 16 14 43 43 H 0.96999 * 119.99748 * 180.02562 * 22 21 19 44 44 H 1.09000 * 109.88696 * 239.52759 * 27 18 17 45 45 H 1.08999 * 109.88266 * 118.35347 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2806 2.0033 -1.1665 5 8 2.6852 3.1465 -1.1665 6 6 2.0709 1.2782 -2.4709 7 1 2.3034 0.2195 -2.3563 8 6 0.6185 1.4577 -2.9557 9 6 0.6147 1.4951 -4.4954 10 6 1.7437 2.4694 -4.9201 11 16 3.1085 2.0182 -3.7829 12 8 3.7201 3.2017 -3.2883 13 8 3.9045 1.0046 -4.3815 14 6 2.2217 2.0862 1.2680 15 1 1.7163 3.0519 1.2561 16 6 3.7350 2.2623 1.5616 17 6 4.0864 0.8869 2.1934 18 7 2.9047 0.5269 2.9978 19 6 2.8995 -0.3202 4.0737 20 1 1.9774 -0.5201 4.5993 21 6 4.0794 -0.9222 4.4888 22 7 5.2031 -0.6793 3.8479 23 14 4.0723 -2.0783 5.9561 24 1 2.6932 -2.1832 6.4968 25 1 4.5410 -3.4214 5.5304 26 1 4.9770 -1.5486 7.0079 27 6 1.7326 1.2286 2.4542 28 1 -0.3634 0.4160 0.9397 29 1 -0.3633 0.6059 -0.8301 30 1 -0.3634 -1.0218 -0.1097 31 1 1.8932 -0.5139 0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 0.0096 0.6239 -2.6060 34 1 0.2149 2.3923 -2.5659 35 1 -0.3472 1.8578 -4.8577 36 1 0.8122 0.4993 -4.8921 37 1 1.4391 3.5047 -4.7672 38 1 2.0320 2.2989 -5.9573 39 1 4.2949 2.4277 0.6411 40 1 3.9037 3.0728 2.2707 41 1 4.9662 0.9763 2.8307 42 1 4.2566 0.1428 1.4152 43 1 6.0275 -1.1003 4.1377 44 1 1.2961 1.8697 3.2200 45 1 0.9945 0.5048 2.1087 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034044917.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:01:44 Heat of formation + Delta-G solvation = -54.635503 kcal Electronic energy + Delta-G solvation = -28366.899252 eV Core-core repulsion = 24513.569164 eV Total energy + Delta-G solvation = -3853.330088 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 1.76 seconds Orbital eigenvalues (eV) -40.30656 -37.65541 -37.10071 -36.38171 -35.85345 -34.99684 -32.46368 -30.60519 -30.54865 -28.75157 -27.48065 -25.94123 -24.49905 -23.21972 -22.12608 -21.07494 -20.11577 -19.00826 -18.34838 -17.72825 -17.00722 -16.89438 -16.38918 -16.20604 -15.51717 -15.04042 -14.80789 -14.70170 -14.14752 -14.02926 -13.79743 -13.61226 -13.24201 -12.94646 -12.68583 -12.53785 -12.24528 -12.13580 -12.08637 -12.02499 -11.93289 -11.69820 -11.60501 -11.44943 -11.18571 -10.99687 -10.93976 -10.71230 -10.68797 -10.38528 -10.17563 -10.10857 -9.93556 -9.68913 -9.49741 -8.70038 -8.33989 -6.88952 -5.69007 -3.12336 -0.15508 2.36041 2.60871 3.00070 3.36573 3.41939 3.44795 3.48189 3.83040 4.06612 4.21858 4.31627 4.41374 4.44489 4.61245 4.71568 5.08268 5.10995 5.17339 5.27895 5.33906 5.35399 5.38549 5.43780 5.49909 5.54823 5.59662 5.69084 5.81325 5.86005 5.96893 6.22558 6.33289 6.37301 6.54752 6.65104 6.72976 6.97295 7.50192 7.55769 7.59000 7.84037 8.24056 8.32552 9.16996 9.77644 10.41952 11.34098 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.021884 B = 0.003514 C = 0.003377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.185761 B = 7965.107250 C = 8290.560046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.090 3.910 3 N -0.579 5.579 4 C 0.531 3.469 5 O -0.504 6.504 6 C -0.601 4.601 7 H 0.160 0.840 8 C -0.102 4.102 9 C -0.118 4.118 10 C -0.593 4.593 11 S 2.405 3.595 12 O -0.891 6.891 13 O -0.935 6.935 14 C 0.134 3.866 15 H 0.081 0.919 16 C -0.154 4.154 17 C 0.154 3.846 18 N -0.602 5.602 19 C -0.226 4.226 20 H 0.078 0.922 21 C -0.008 4.008 22 N -0.918 5.918 23 Si 0.914 3.086 24 H -0.280 1.280 25 H -0.291 1.291 26 H -0.290 1.290 27 C 0.122 3.878 28 H 0.065 0.935 29 H 0.056 0.944 30 H 0.065 0.935 31 H 0.107 0.893 32 H 0.072 0.928 33 H 0.101 0.899 34 H 0.089 0.911 35 H 0.099 0.901 36 H 0.088 0.912 37 H 0.140 0.860 38 H 0.136 0.864 39 H 0.066 0.934 40 H 0.070 0.930 41 H 0.106 0.894 42 H 0.011 0.989 43 H 0.252 0.748 44 H 0.033 0.967 45 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.460 3.146 -17.230 21.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.033 4.033 3 N -0.312 5.312 4 C 0.315 3.685 5 O -0.379 6.379 6 C -0.710 4.710 7 H 0.177 0.823 8 C -0.141 4.141 9 C -0.156 4.156 10 C -0.722 4.722 11 S 2.583 3.417 12 O -0.888 6.888 13 O -0.932 6.932 14 C 0.032 3.968 15 H 0.099 0.901 16 C -0.194 4.194 17 C 0.029 3.971 18 N -0.329 5.329 19 C -0.354 4.354 20 H 0.096 0.904 21 C -0.204 4.204 22 N -0.566 5.566 23 Si 0.744 3.256 24 H -0.206 1.206 25 H -0.218 1.218 26 H -0.217 1.217 27 C -0.004 4.004 28 H 0.084 0.916 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.126 0.874 32 H 0.090 0.910 33 H 0.120 0.880 34 H 0.107 0.893 35 H 0.118 0.882 36 H 0.107 0.893 37 H 0.158 0.842 38 H 0.155 0.845 39 H 0.085 0.915 40 H 0.088 0.912 41 H 0.123 0.877 42 H 0.029 0.971 43 H 0.063 0.937 44 H 0.051 0.949 45 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -11.125 3.731 -17.124 20.758 hybrid contribution -0.890 -1.000 0.788 1.553 sum -12.016 2.731 -16.336 20.462 Atomic orbital electron populations 1.22406 0.95982 1.02108 1.02688 1.21785 0.94249 0.82696 1.04545 1.47884 1.63867 1.14185 1.05246 1.19024 0.79263 0.86549 0.83679 1.90928 1.44266 1.16303 1.86419 1.30823 1.13431 1.14317 1.12408 0.82270 1.22019 0.91738 1.05652 0.94670 1.22227 0.99689 0.99211 0.94492 1.30703 1.16751 1.09390 1.15374 1.08985 0.77862 0.76657 0.78166 1.93714 1.72337 1.45151 1.77637 1.93627 1.64528 1.59700 1.75306 1.22091 0.98170 0.94758 0.81829 0.90141 1.23454 0.94086 1.01229 1.00611 1.22010 0.92941 0.88727 0.93404 1.44542 1.02618 1.52376 1.33333 1.19084 0.94507 1.17887 1.03952 0.90430 1.24797 0.95521 1.00600 0.99493 1.69830 0.98632 1.46753 1.41420 0.86018 0.77313 0.80247 0.81990 1.20559 1.21774 1.21733 1.21748 0.92034 0.94317 0.92277 0.91592 0.92489 0.91623 0.87449 0.90990 0.88040 0.89264 0.88231 0.89288 0.84208 0.84536 0.91489 0.91180 0.87655 0.97100 0.93704 0.94882 0.94132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.82 9.87 37.16 0.37 -1.46 16 2 C 0.09 1.22 5.27 -4.04 -0.02 1.20 16 3 N -0.58 -9.09 2.58 -164.02 -0.42 -9.51 16 4 C 0.53 8.15 6.36 -10.98 -0.07 8.08 16 5 O -0.50 -9.47 13.60 -18.01 -0.24 -9.72 16 6 C -0.60 -6.47 2.90 -27.27 -0.08 -6.55 16 7 H 0.16 1.45 6.07 -51.93 -0.32 1.14 16 8 C -0.10 -0.71 5.15 -25.59 -0.13 -0.84 16 9 C -0.12 -0.59 6.48 -25.12 -0.16 -0.76 16 10 C -0.59 -3.90 7.31 38.24 0.28 -3.62 16 11 S 2.40 28.18 5.91 -107.50 -0.64 27.54 16 12 O -0.89 -14.75 15.48 -66.97 -1.04 -15.79 16 13 O -0.93 -13.34 18.14 -57.71 -1.05 -14.39 16 14 C 0.13 2.42 3.15 -66.09 -0.21 2.21 16 15 H 0.08 1.39 8.10 -51.93 -0.42 0.97 16 16 C -0.15 -3.18 6.58 -24.32 -0.16 -3.34 16 17 C 0.15 3.73 5.88 -2.27 -0.01 3.72 16 18 N -0.60 -14.63 3.08 -169.77 -0.52 -15.15 16 19 C -0.23 -6.03 10.27 -15.06 -0.15 -6.18 16 20 H 0.08 1.99 7.83 -52.48 -0.41 1.58 16 21 C -0.01 -0.22 5.49 -17.43 -0.10 -0.32 16 22 N -0.92 -26.37 10.09 55.49 0.56 -25.81 16 23 Si 0.91 21.56 29.55 -169.99 -5.02 16.54 16 24 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 25 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 26 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 27 C 0.12 2.38 6.03 -3.06 -0.02 2.36 16 28 H 0.07 0.77 6.57 -51.93 -0.34 0.43 16 29 H 0.06 0.49 5.42 -51.92 -0.28 0.21 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.11 1.84 6.18 -51.93 -0.32 1.52 16 32 H 0.07 0.82 5.78 -51.93 -0.30 0.52 16 33 H 0.10 0.55 6.37 -51.93 -0.33 0.22 16 34 H 0.09 0.65 7.85 -51.92 -0.41 0.24 16 35 H 0.10 0.33 8.14 -51.92 -0.42 -0.09 16 36 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.14 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.14 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.07 1.41 7.26 -51.93 -0.38 1.03 16 40 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 41 H 0.11 2.92 5.87 -51.93 -0.31 2.61 16 42 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 43 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 44 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 45 H 0.04 0.73 4.07 -51.93 -0.21 0.52 16 LS Contribution 351.32 15.07 5.29 5.29 Total: -1.00 -36.08 351.32 -10.09 -46.17 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: -6.54 Total: 0.32 kcal Atomic # 6 Polarization: -5.02 SS G_CDS: -0.47 Total: -5.49 kcal Atomic # 7 Polarization: -50.09 SS G_CDS: -0.39 Total: -50.47 kcal Atomic # 8 Polarization: -37.57 SS G_CDS: -2.33 Total: -39.90 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Atomic # 16 Polarization: 28.18 SS G_CDS: -0.64 Total: 27.54 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -36.08 -10.09 -46.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034044917.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.469 kcal (2) G-P(sol) polarization free energy of solvation -36.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.77 seconds