Wall clock time and date at job start Tue Mar 31 2020 06:00:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 O 1.42101 * 108.57717 * 2 1 4 4 O 1.42102 * 108.57986 * 228.97734 * 2 1 3 5 5 C 1.81399 * 101.92361 * 114.48574 * 2 1 3 6 6 C 1.50698 * 109.47234 * 179.97438 * 5 2 1 7 7 O 1.21286 * 119.99889 * 0.02562 * 6 5 2 8 8 N 1.34777 * 120.00181 * 180.02562 * 6 5 2 9 9 C 1.48182 * 127.80102 * 0.02562 * 8 6 5 10 10 C 1.54503 * 104.63126 * 140.66472 * 9 8 6 11 11 C 1.53836 * 104.79206 * 23.80118 * 10 9 8 12 12 C 1.48252 * 127.80340 * 179.97438 * 8 6 5 13 13 C 1.52483 * 110.21653 * 240.96009 * 11 10 9 14 14 C 1.53125 * 109.65497 * 178.09249 * 13 11 10 15 15 C 1.52747 * 109.36759 * 60.36414 * 14 13 11 16 16 N 1.46934 * 109.08413 * 305.08116 * 15 14 13 17 17 C 1.36935 * 120.67793 * 234.05696 * 16 15 14 18 18 H 1.07998 * 120.00035 * 152.47546 * 17 16 15 19 19 C 1.38816 * 119.99920 * 332.74683 * 17 16 15 20 20 N 1.31612 * 119.99920 * 159.11387 * 19 17 16 21 21 Si 1.86798 * 119.99796 * 339.11661 * 19 17 16 22 22 H 1.48496 * 109.47311 * 93.31688 * 21 19 17 23 23 H 1.48500 * 109.47039 * 213.31887 * 21 19 17 24 24 H 1.48503 * 109.47459 * 333.31464 * 21 19 17 25 25 C 1.47026 * 118.64840 * 53.77987 * 16 15 14 26 26 H 1.09004 * 109.47088 * 305.51413 * 1 2 3 27 27 H 1.09000 * 109.47287 * 65.51083 * 1 2 3 28 28 H 1.08999 * 109.46967 * 185.51474 * 1 2 3 29 29 H 1.09004 * 109.46783 * 60.00354 * 5 2 1 30 30 H 1.08995 * 109.46964 * 300.00190 * 5 2 1 31 31 H 1.09010 * 110.40388 * 21.88375 * 9 8 6 32 32 H 1.08998 * 110.40659 * 259.45936 * 9 8 6 33 33 H 1.08997 * 110.37595 * 264.97110 * 10 9 8 34 34 H 1.09003 * 110.46497 * 142.67325 * 10 9 8 35 35 H 1.09001 * 110.42414 * 100.42382 * 12 8 6 36 36 H 1.09006 * 110.42332 * 337.94981 * 12 8 6 37 37 H 1.08997 * 109.43519 * 298.14665 * 13 11 10 38 38 H 1.08995 * 109.43664 * 58.03425 * 13 11 10 39 39 H 1.08999 * 109.49504 * 180.43834 * 14 13 11 40 40 H 1.09002 * 109.49773 * 300.54236 * 14 13 11 41 41 H 1.09000 * 109.49693 * 185.18101 * 15 14 13 42 42 H 1.09003 * 109.42270 * 64.94291 * 15 14 13 43 43 H 0.97002 * 119.99820 * 179.97438 * 20 19 17 44 44 H 1.09002 * 109.57268 * 67.32633 * 25 16 15 45 45 H 1.08995 * 109.57672 * 187.70659 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3470 0.0000 4 8 2.2667 -0.8841 -1.0162 5 6 2.1888 -0.7356 1.6152 6 6 3.6827 -0.8182 1.7951 7 8 4.4218 -0.4196 0.9200 8 7 4.1974 -1.3351 2.9284 9 6 3.4622 -1.8690 4.0990 10 6 4.2725 -3.1097 4.5361 11 6 5.6930 -2.8596 4.0011 12 6 5.6271 -1.4988 3.2851 13 6 6.0851 -3.9547 3.0150 14 6 7.4810 -3.6677 2.4550 15 6 8.4908 -3.6407 3.6007 16 7 8.0456 -2.6708 4.6107 17 6 8.8772 -1.6668 5.0296 18 1 8.4622 -0.7387 5.3940 19 6 10.2536 -1.8398 4.9805 20 7 11.0490 -0.7912 4.9784 21 14 10.9769 -3.5609 4.9172 22 1 11.1975 -3.9535 3.5022 23 1 12.2718 -3.5807 5.6440 24 1 10.0366 -4.5169 5.5554 25 6 6.6867 -2.7966 5.1579 26 1 -0.3633 0.5970 0.8365 27 1 -0.3634 0.4260 -0.9352 28 1 -0.3633 -1.0229 0.0988 29 1 1.7611 -1.7369 1.6664 30 1 1.7611 -0.1170 2.4042 31 1 2.4505 -2.1572 3.8132 32 1 3.4359 -1.1306 4.9003 33 1 3.8532 -4.0125 4.0921 34 1 4.2856 -3.1929 5.6229 35 1 5.9457 -0.7005 3.9554 36 1 6.2442 -1.5114 2.3867 37 1 6.0899 -4.9177 3.5256 38 1 5.3646 -3.9816 2.1976 39 1 7.7554 -4.4477 1.7448 40 1 7.4795 -2.7009 1.9517 41 1 9.4679 -3.3463 3.2177 42 1 8.5560 -4.6318 4.0499 43 1 12.0108 -0.9121 4.9445 44 1 6.6149 -3.7083 5.7510 45 1 6.4638 -1.9329 5.7842 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001040095225.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:02 Heat of formation + Delta-G solvation = -64.122277 kcal Electronic energy + Delta-G solvation = -27714.061107 eV Core-core repulsion = 23860.319642 eV Total energy + Delta-G solvation = -3853.741465 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 2.19 seconds Orbital eigenvalues (eV) -40.45994 -38.70761 -37.17092 -36.26323 -36.09506 -33.21197 -31.83724 -30.92134 -30.72035 -29.74531 -29.14345 -25.81789 -25.36087 -23.64443 -22.07174 -20.97222 -19.93504 -18.94704 -18.36919 -17.66356 -16.81530 -16.68124 -16.58438 -16.17238 -15.79469 -15.33572 -15.05545 -14.67934 -14.23997 -13.81878 -13.74047 -13.62180 -13.60623 -13.40278 -13.23324 -12.93875 -12.66648 -12.23892 -12.22104 -12.17196 -12.15626 -11.87827 -11.67473 -11.43300 -11.41840 -11.13959 -11.01798 -10.87657 -10.53718 -10.49441 -10.22551 -10.04474 -9.83124 -9.65016 -9.42960 -8.75687 -8.60885 -6.98989 -5.94608 -3.31029 -0.41586 2.36204 2.43458 2.70808 3.33653 3.48724 3.49925 3.51335 3.68483 4.07858 4.27680 4.36633 4.53083 4.56878 4.66233 4.69282 4.76836 4.86288 5.05826 5.18834 5.19827 5.27055 5.31825 5.48543 5.55859 5.71666 5.82530 5.84746 5.89796 5.97079 6.09883 6.16995 6.32273 6.35452 6.41973 6.51443 6.56913 6.65100 6.72978 6.96650 7.42000 7.87480 7.94334 8.32021 8.92295 9.71650 10.08673 11.21113 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.022734 B = 0.003143 C = 0.003037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.336025 B = 8907.868779 C = 9217.239143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.663 4.663 2 S 2.456 3.544 3 O -0.920 6.920 4 O -0.920 6.920 5 C -0.655 4.655 6 C 0.558 3.442 7 O -0.529 6.529 8 N -0.613 5.613 9 C 0.098 3.902 10 C -0.126 4.126 11 C -0.089 4.089 12 C 0.123 3.877 13 C -0.094 4.094 14 C -0.141 4.141 15 C 0.125 3.875 16 N -0.604 5.604 17 C -0.262 4.262 18 H 0.085 0.915 19 C 0.025 3.975 20 N -0.906 5.906 21 Si 0.884 3.116 22 H -0.289 1.289 23 H -0.305 1.305 24 H -0.271 1.271 25 C 0.165 3.835 26 H 0.128 0.872 27 H 0.132 0.868 28 H 0.128 0.872 29 H 0.156 0.844 30 H 0.157 0.843 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.072 0.928 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.092 0.908 37 H 0.059 0.941 38 H 0.051 0.949 39 H 0.055 0.945 40 H 0.068 0.932 41 H 0.072 0.928 42 H 0.024 0.976 43 H 0.263 0.737 44 H 0.028 0.972 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.544 -4.249 -3.256 26.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.812 4.812 2 S 2.632 3.368 3 O -0.917 6.917 4 O -0.917 6.917 5 C -0.782 4.782 6 C 0.343 3.657 7 O -0.406 6.406 8 N -0.346 5.346 9 C -0.025 4.025 10 C -0.165 4.165 11 C -0.092 4.092 12 C 0.002 3.998 13 C -0.131 4.131 14 C -0.180 4.180 15 C 0.000 4.000 16 N -0.328 5.328 17 C -0.390 4.390 18 H 0.103 0.897 19 C -0.174 4.174 20 N -0.549 5.549 21 Si 0.714 3.286 22 H -0.217 1.217 23 H -0.233 1.233 24 H -0.196 1.196 25 C 0.038 3.962 26 H 0.147 0.853 27 H 0.151 0.849 28 H 0.147 0.853 29 H 0.174 0.826 30 H 0.175 0.825 31 H 0.093 0.907 32 H 0.095 0.905 33 H 0.090 0.910 34 H 0.102 0.898 35 H 0.100 0.900 36 H 0.111 0.889 37 H 0.077 0.923 38 H 0.070 0.930 39 H 0.074 0.926 40 H 0.086 0.914 41 H 0.090 0.910 42 H 0.042 0.958 43 H 0.073 0.927 44 H 0.045 0.955 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -24.419 -3.615 -4.411 25.076 hybrid contribution -0.225 -1.332 0.785 1.562 sum -24.644 -4.947 -3.626 25.396 Atomic orbital electron populations 1.30408 1.27259 1.11542 1.12014 1.07194 0.77421 0.75916 0.76316 1.93608 1.78595 1.34052 1.85408 1.93603 1.78623 1.67212 1.52311 1.30867 1.03388 1.16063 1.27893 1.18587 0.87177 0.78251 0.81636 1.90897 1.60596 1.48425 1.40678 1.48963 1.09854 1.59986 1.15781 1.22514 0.95879 0.96157 0.87944 1.22578 0.95041 0.97082 1.01758 1.21669 0.94809 0.94841 0.97840 1.22569 0.79390 0.96816 1.01046 1.21357 0.97026 0.97294 0.97447 1.22050 0.95572 1.01565 0.98834 1.21252 0.97071 0.92535 0.89147 1.44348 1.11630 1.33344 1.43449 1.18865 0.87181 0.92978 1.39931 0.89741 1.25251 0.96045 0.96733 0.99375 1.69842 1.03690 1.28688 1.52667 0.86937 0.77898 0.86773 0.76953 1.21664 1.23289 1.19596 1.20900 0.84168 0.99448 0.91637 0.85280 0.84922 0.85319 0.82578 0.82503 0.90653 0.90473 0.90963 0.89814 0.89983 0.88947 0.92266 0.93038 0.92629 0.91354 0.91008 0.95796 0.92747 0.95454 0.91649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -2.28 10.62 101.05 1.07 -1.21 16 2 S 2.46 22.82 4.60 -107.50 -0.49 22.33 16 3 O -0.92 -12.79 17.95 -59.52 -1.07 -13.86 16 4 O -0.92 -12.66 17.95 -59.54 -1.07 -13.73 16 5 C -0.65 -4.95 5.27 36.00 0.19 -4.76 16 6 C 0.56 7.97 7.93 -10.99 -0.09 7.88 16 7 O -0.53 -10.23 15.89 2.55 0.04 -10.18 16 8 N -0.61 -8.24 3.32 -169.41 -0.56 -8.80 16 9 C 0.10 0.89 6.92 -2.33 -0.02 0.88 16 10 C -0.13 -1.28 6.29 -25.51 -0.16 -1.44 16 11 C -0.09 -1.30 0.68 -154.05 -0.11 -1.41 16 12 C 0.12 2.03 5.79 -2.61 -0.02 2.01 16 13 C -0.09 -1.41 4.48 -26.93 -0.12 -1.53 16 14 C -0.14 -2.54 5.86 -26.80 -0.16 -2.70 16 15 C 0.13 2.69 4.17 -3.94 -0.02 2.68 16 16 N -0.60 -13.69 2.61 -172.84 -0.45 -14.15 16 17 C -0.26 -7.10 10.04 -15.06 -0.15 -7.25 16 18 H 0.09 2.44 8.05 -52.49 -0.42 2.02 16 19 C 0.03 0.72 5.23 -17.43 -0.09 0.63 16 20 N -0.91 -27.76 13.97 55.49 0.78 -26.99 16 21 Si 0.88 22.32 24.36 -169.99 -4.14 18.18 16 22 H -0.29 -7.12 6.63 56.52 0.37 -6.75 16 23 H -0.30 -7.86 7.11 56.52 0.40 -7.46 16 24 H -0.27 -6.65 6.64 56.52 0.38 -6.28 16 25 C 0.17 2.93 4.90 -3.94 -0.02 2.91 16 26 H 0.13 0.17 8.14 -51.92 -0.42 -0.26 16 27 H 0.13 0.42 8.14 -51.92 -0.42 -0.01 16 28 H 0.13 0.16 8.14 -51.92 -0.42 -0.26 16 29 H 0.16 0.58 7.95 -51.92 -0.41 0.16 16 30 H 0.16 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.08 0.43 7.31 -51.92 -0.38 0.05 16 32 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.07 0.66 7.70 -51.93 -0.40 0.26 16 34 H 0.08 0.75 7.70 -51.93 -0.40 0.35 16 35 H 0.08 1.46 7.73 -51.93 -0.40 1.06 16 36 H 0.09 1.80 5.63 -51.93 -0.29 1.51 16 37 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.07 1.34 6.21 -51.93 -0.32 1.02 16 41 H 0.07 1.72 4.46 -51.93 -0.23 1.49 16 42 H 0.02 0.51 7.11 -51.93 -0.37 0.14 16 43 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 44 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.07 1.15 7.76 -51.93 -0.40 0.75 16 LS Contribution 358.40 15.07 5.40 5.40 Total: -1.00 -40.09 358.40 -8.27 -48.36 By element: Atomic # 1 Polarization: 3.77 SS G_CDS: -7.03 Total: -3.25 kcal Atomic # 6 Polarization: -3.62 SS G_CDS: 0.32 Total: -3.30 kcal Atomic # 7 Polarization: -49.70 SS G_CDS: -0.24 Total: -49.94 kcal Atomic # 8 Polarization: -35.68 SS G_CDS: -2.10 Total: -37.77 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -4.14 Total: 18.18 kcal Atomic # 16 Polarization: 22.82 SS G_CDS: -0.49 Total: 22.33 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -40.09 -8.27 -48.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040095225.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.763 kcal (2) G-P(sol) polarization free energy of solvation -40.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.19 seconds