Wall clock time and date at job start Tue Mar 31 2020 05:19:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34778 * 120.00012 * 2 1 4 4 O 1.21283 * 119.99731 * 179.97438 * 3 2 1 5 5 C 1.50692 * 119.99780 * 359.97438 * 3 2 1 6 6 C 1.53008 * 109.46854 * 180.02562 * 5 3 2 7 7 H 1.09000 * 109.37997 * 304.78264 * 6 5 3 8 8 C 1.52626 * 109.31069 * 64.62862 * 6 5 3 9 9 C 1.52595 * 110.61647 * 190.19846 * 8 6 5 10 10 C 1.53041 * 109.89880 * 289.85351 * 9 8 6 11 11 S 1.81664 * 108.99831 * 63.70181 * 10 9 8 12 12 O 1.42102 * 108.66813 * 60.03077 * 11 10 9 13 13 O 1.42103 * 108.66184 * 191.27490 * 11 10 9 14 14 C 1.53045 * 109.38292 * 184.99849 * 6 5 3 15 15 C 1.46507 * 119.99837 * 179.97438 * 2 1 3 16 16 C 1.53948 * 113.73925 * 36.68288 * 15 2 1 17 17 N 1.47584 * 86.11280 * 222.04159 * 16 15 2 18 18 C 1.36928 * 134.49234 * 204.63398 * 17 16 15 19 19 H 1.08003 * 120.00341 * 180.02562 * 18 17 16 20 20 C 1.38816 * 120.00076 * 0.02562 * 18 17 16 21 21 N 1.31620 * 119.99669 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 120.00271 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.46750 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47214 * 119.99446 * 22 20 18 25 25 H 1.48502 * 109.46939 * 239.99704 * 22 20 18 26 26 C 1.47580 * 91.01495 * 24.64439 * 17 16 15 27 27 H 1.09005 * 109.46494 * 90.00875 * 1 2 3 28 28 H 1.09005 * 109.47516 * 210.00033 * 1 2 3 29 29 H 1.08992 * 109.47617 * 330.00906 * 1 2 3 30 30 H 1.08994 * 109.47666 * 60.00019 * 5 3 2 31 31 H 1.09005 * 109.47431 * 299.99618 * 5 3 2 32 32 H 1.08993 * 109.34460 * 69.85455 * 8 6 5 33 33 H 1.08999 * 109.16999 * 310.43221 * 8 6 5 34 34 H 1.09002 * 109.38625 * 169.74757 * 9 8 6 35 35 H 1.09006 * 109.38226 * 49.95774 * 9 8 6 36 36 H 1.09003 * 109.54641 * 183.55451 * 10 9 8 37 37 H 1.08997 * 109.54894 * 303.84553 * 10 9 8 38 38 H 1.08994 * 109.54946 * 56.43888 * 14 6 5 39 39 H 1.09001 * 109.62582 * 296.19539 * 14 6 5 40 40 H 1.09002 * 112.93827 * 168.41357 * 15 2 1 41 41 H 1.08999 * 113.76927 * 336.34615 * 16 15 2 42 42 H 1.08997 * 113.76753 * 107.74265 * 16 15 2 43 43 H 0.97007 * 119.99494 * 180.02562 * 21 20 18 44 44 H 1.09005 * 113.76641 * 221.05521 * 26 17 16 45 45 H 1.08998 * 113.77725 * 89.65987 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1671 0.0005 5 6 1.3854 2.4722 -0.0006 6 6 2.3797 3.6352 -0.0011 7 1 3.0606 3.5293 0.8435 8 6 3.1768 3.6172 -1.3026 9 6 4.3417 4.6003 -1.2328 10 6 3.8133 6.0364 -1.2550 11 16 2.8107 6.3207 0.2330 12 8 3.6282 6.1193 1.3777 13 8 2.1139 7.5502 0.0837 14 6 1.6166 4.9559 0.1241 15 6 2.1975 -1.2688 0.0006 16 6 1.5286 -2.3710 -0.8408 17 7 1.8682 -3.2838 0.2681 18 6 2.0736 -4.6336 0.3712 19 1 2.3180 -5.0712 1.3279 20 6 1.9678 -5.4397 -0.7540 21 7 1.6694 -4.9066 -1.9198 22 14 2.2487 -7.2812 -0.6135 23 1 2.5687 -7.6270 0.7948 24 1 1.0209 -8.0028 -1.0342 25 1 3.3805 -7.6774 -1.4895 26 6 1.8971 -2.1574 1.2212 27 1 -0.3632 -0.0002 -1.0277 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3634 0.8900 0.5136 30 1 0.7584 2.5302 0.8891 31 1 0.7591 2.5298 -0.8909 32 1 2.5232 3.8929 -2.1301 33 1 3.5643 2.6124 -1.4710 34 1 4.9992 4.4434 -2.0879 35 1 4.9004 4.4344 -0.3116 36 1 4.6515 6.7332 -1.2686 37 1 3.1989 6.1853 -2.1428 38 1 1.0007 4.9374 1.0231 39 1 0.9813 5.0960 -0.7505 40 1 3.2615 -1.1452 -0.2011 41 1 0.4570 -2.2281 -0.9799 42 1 2.0534 -2.5939 -1.7697 43 1 1.5951 -5.4700 -2.7059 44 1 2.7161 -2.2099 1.9386 45 1 0.9338 -1.9518 1.6879 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044149511.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:51 Heat of formation + Delta-G solvation = -50.879903 kcal Electronic energy + Delta-G solvation = -26796.511900 eV Core-core repulsion = 22943.344667 eV Total energy + Delta-G solvation = -3853.167233 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 2.12 seconds Orbital eigenvalues (eV) -40.20713 -38.34661 -37.39452 -36.79857 -36.30956 -34.54655 -33.20556 -32.01850 -29.01157 -27.88398 -27.37115 -26.62290 -24.86793 -23.63832 -22.62709 -21.09028 -19.73018 -19.12819 -18.50804 -17.29254 -17.00345 -16.85143 -16.50352 -15.94536 -15.89791 -15.75571 -15.10624 -14.88750 -14.56707 -14.01128 -13.88327 -13.52946 -13.26233 -13.22146 -13.17156 -12.54525 -12.51625 -12.35750 -12.29786 -12.19892 -11.91088 -11.81015 -11.62298 -11.48204 -11.37960 -11.36315 -11.08054 -10.94210 -10.90519 -10.75970 -10.38742 -10.26578 -10.08827 -9.62570 -9.45612 -8.86948 -8.20986 -6.97315 -5.84779 -3.17603 -0.29155 2.33120 2.76387 3.16844 3.34022 3.35529 3.40944 3.43090 3.62419 4.11120 4.17929 4.31438 4.40938 4.42807 4.53702 4.71711 4.78173 4.95329 5.11076 5.13773 5.16654 5.21182 5.22696 5.32496 5.39203 5.44250 5.49207 5.61320 5.70543 5.73074 5.80531 5.97430 6.01900 6.10115 6.11227 6.37972 6.52182 6.71153 7.12586 7.26707 7.45844 7.69258 7.89767 8.36368 8.96910 9.62758 10.49223 11.32465 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.035754 B = 0.002258 C = 0.002225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.942667 B =12396.050136 C =12579.437505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.599 5.599 3 C 0.508 3.492 4 O -0.542 6.542 5 C -0.132 4.132 6 C -0.062 4.062 7 H 0.102 0.898 8 C -0.145 4.145 9 C -0.107 4.107 10 C -0.602 4.602 11 S 2.415 3.585 12 O -0.935 6.935 13 O -0.948 6.948 14 C -0.601 4.601 15 C 0.090 3.910 16 C 0.157 3.843 17 N -0.606 5.606 18 C -0.222 4.222 19 H 0.082 0.918 20 C -0.007 4.007 21 N -0.921 5.921 22 Si 0.914 3.086 23 H -0.279 1.279 24 H -0.290 1.290 25 H -0.289 1.289 26 C 0.108 3.892 27 H 0.057 0.943 28 H 0.078 0.922 29 H 0.065 0.935 30 H 0.096 0.904 31 H 0.096 0.904 32 H 0.069 0.931 33 H 0.108 0.892 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.132 0.868 37 H 0.131 0.869 38 H 0.135 0.865 39 H 0.134 0.866 40 H 0.116 0.884 41 H 0.031 0.969 42 H 0.076 0.924 43 H 0.254 0.746 44 H 0.047 0.953 45 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.245 22.167 0.172 22.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.331 5.331 3 C 0.296 3.704 4 O -0.420 6.420 5 C -0.173 4.173 6 C -0.081 4.081 7 H 0.120 0.880 8 C -0.182 4.182 9 C -0.145 4.145 10 C -0.732 4.732 11 S 2.598 3.402 12 O -0.933 6.933 13 O -0.945 6.945 14 C -0.730 4.730 15 C -0.014 4.014 16 C 0.031 3.969 17 N -0.333 5.333 18 C -0.350 4.350 19 H 0.100 0.900 20 C -0.204 4.204 21 N -0.568 5.568 22 Si 0.745 3.255 23 H -0.204 1.204 24 H -0.217 1.217 25 H -0.216 1.216 26 C -0.020 4.020 27 H 0.076 0.924 28 H 0.097 0.903 29 H 0.084 0.916 30 H 0.115 0.885 31 H 0.115 0.885 32 H 0.087 0.913 33 H 0.126 0.874 34 H 0.105 0.895 35 H 0.105 0.895 36 H 0.150 0.850 37 H 0.150 0.850 38 H 0.154 0.846 39 H 0.153 0.847 40 H 0.134 0.866 41 H 0.049 0.951 42 H 0.095 0.905 43 H 0.064 0.936 44 H 0.065 0.935 45 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -1.508 22.497 0.706 22.559 hybrid contribution -0.424 -1.615 -0.631 1.785 sum -1.933 20.882 0.075 20.971 Atomic orbital electron populations 1.21801 0.79953 1.03007 1.01986 1.48078 1.06908 1.06355 1.71800 1.20539 0.88147 0.85317 0.76396 1.90661 1.13838 1.87294 1.50231 1.21740 0.98836 0.91987 1.04727 1.20675 0.96318 0.90260 1.00867 0.88021 1.21946 0.96716 1.03169 0.96333 1.21251 0.99020 0.88902 1.05313 1.30244 1.15143 1.06754 1.21045 1.08058 0.77786 0.76581 0.77783 1.93603 1.67290 1.86381 1.45993 1.93592 1.73584 1.40380 1.86993 1.30357 1.15953 1.14840 1.11885 1.24046 0.98058 0.79893 0.99359 1.22620 0.96525 0.83672 0.94092 1.45668 1.81071 1.02124 1.04399 1.19044 1.40866 0.80159 0.94917 0.89978 1.24810 1.01821 0.98327 0.95435 1.69825 1.54109 1.34125 0.98709 0.86011 0.77429 0.84668 0.77438 1.20387 1.21696 1.21594 1.22977 0.98085 0.87269 0.93629 0.92399 0.90307 0.91617 0.88526 0.88528 0.91271 0.87371 0.89489 0.89505 0.85008 0.85029 0.84633 0.84726 0.86622 0.95108 0.90550 0.93595 0.93479 0.94762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.85 8.84 59.85 0.53 1.38 16 2 N -0.60 -8.71 3.09 -175.74 -0.54 -9.25 16 3 C 0.51 6.88 7.29 -10.99 -0.08 6.80 16 4 O -0.54 -9.08 13.49 5.56 0.07 -9.01 16 5 C -0.13 -1.13 3.72 -27.88 -0.10 -1.23 16 6 C -0.06 -0.51 1.68 -90.78 -0.15 -0.66 16 7 H 0.10 1.00 7.83 -51.93 -0.41 0.59 16 8 C -0.14 -1.17 4.72 -27.13 -0.13 -1.30 16 9 C -0.11 -0.77 5.74 -26.92 -0.15 -0.93 16 10 C -0.60 -3.39 6.34 37.18 0.24 -3.15 16 11 S 2.41 18.82 5.30 -107.50 -0.57 18.25 16 12 O -0.94 -10.97 17.94 -57.82 -1.04 -12.01 16 13 O -0.95 -10.40 18.11 -57.82 -1.05 -11.45 16 14 C -0.60 -3.42 5.62 37.18 0.21 -3.21 16 15 C 0.09 1.70 4.40 -70.15 -0.31 1.39 16 16 C 0.16 3.54 6.93 -2.97 -0.02 3.51 16 17 N -0.61 -15.22 3.70 -178.10 -0.66 -15.88 16 18 C -0.22 -6.14 10.70 -15.06 -0.16 -6.30 16 19 H 0.08 2.20 7.83 -52.48 -0.41 1.79 16 20 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 21 N -0.92 -26.72 11.38 55.49 0.63 -26.09 16 22 Si 0.91 21.81 29.55 -169.99 -5.02 16.78 16 23 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 24 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 25 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 26 C 0.11 2.17 8.46 -2.98 -0.03 2.15 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.08 1.00 6.36 -51.93 -0.33 0.67 16 29 H 0.07 0.51 6.44 -51.93 -0.33 0.18 16 30 H 0.10 0.65 7.40 -51.93 -0.38 0.27 16 31 H 0.10 0.63 8.11 -51.93 -0.42 0.21 16 32 H 0.07 0.41 8.09 -51.93 -0.42 -0.01 16 33 H 0.11 1.19 5.75 -51.93 -0.30 0.89 16 34 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.09 0.71 8.01 -51.93 -0.42 0.29 16 36 H 0.13 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.13 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.14 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.13 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.12 2.39 7.24 -51.93 -0.38 2.01 16 41 H 0.03 0.68 6.71 -51.93 -0.35 0.33 16 42 H 0.08 1.95 7.15 -51.93 -0.37 1.58 16 43 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 44 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 45 H 0.03 0.65 6.97 -51.93 -0.36 0.29 16 LS Contribution 363.02 15.07 5.47 5.47 Total: -1.00 -37.12 363.02 -9.93 -47.05 By element: Atomic # 1 Polarization: 4.96 SS G_CDS: -6.97 Total: -2.01 kcal Atomic # 6 Polarization: -1.61 SS G_CDS: -0.26 Total: -1.86 kcal Atomic # 7 Polarization: -50.65 SS G_CDS: -0.57 Total: -51.22 kcal Atomic # 8 Polarization: -30.46 SS G_CDS: -2.01 Total: -32.47 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.78 kcal Atomic # 16 Polarization: 18.82 SS G_CDS: -0.57 Total: 18.25 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -37.12 -9.93 -47.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044149511.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.828 kcal (2) G-P(sol) polarization free energy of solvation -37.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.12 seconds