Wall clock time and date at job start Tue Mar 31 2020 05:19:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34778 * 120.00012 * 2 1 4 4 O 1.21283 * 119.99731 * 179.97438 * 3 2 1 5 5 C 1.50692 * 119.99780 * 359.97438 * 3 2 1 6 6 C 1.53008 * 109.46854 * 180.02562 * 5 3 2 7 7 H 1.09000 * 109.37997 * 304.78264 * 6 5 3 8 8 C 1.52626 * 109.31069 * 64.62862 * 6 5 3 9 9 C 1.52595 * 110.61647 * 190.19846 * 8 6 5 10 10 C 1.53041 * 109.89880 * 289.85351 * 9 8 6 11 11 S 1.81664 * 108.99831 * 63.70181 * 10 9 8 12 12 O 1.42102 * 108.66813 * 60.03077 * 11 10 9 13 13 O 1.42103 * 108.66184 * 191.27490 * 11 10 9 14 14 C 1.53045 * 109.38292 * 184.99849 * 6 5 3 15 15 C 1.46507 * 119.99837 * 179.97438 * 2 1 3 16 16 C 1.53948 * 113.73925 * 36.68288 * 15 2 1 17 17 N 1.47584 * 86.11280 * 222.04159 * 16 15 2 18 18 C 1.36928 * 134.49234 * 204.63398 * 17 16 15 19 19 H 1.08003 * 120.00341 * 180.02562 * 18 17 16 20 20 C 1.38816 * 120.00076 * 0.02562 * 18 17 16 21 21 N 1.31620 * 119.99669 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 120.00271 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.46750 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47214 * 119.99446 * 22 20 18 25 25 H 1.48502 * 109.46939 * 239.99704 * 22 20 18 26 26 C 1.47580 * 91.01495 * 24.64439 * 17 16 15 27 27 H 1.09005 * 109.46494 * 90.00875 * 1 2 3 28 28 H 1.09005 * 109.47516 * 210.00033 * 1 2 3 29 29 H 1.08992 * 109.47617 * 330.00906 * 1 2 3 30 30 H 1.08994 * 109.47666 * 60.00019 * 5 3 2 31 31 H 1.09005 * 109.47431 * 299.99618 * 5 3 2 32 32 H 1.08993 * 109.34460 * 69.85455 * 8 6 5 33 33 H 1.08999 * 109.16999 * 310.43221 * 8 6 5 34 34 H 1.09002 * 109.38625 * 169.74757 * 9 8 6 35 35 H 1.09006 * 109.38226 * 49.95774 * 9 8 6 36 36 H 1.09003 * 109.54641 * 183.55451 * 10 9 8 37 37 H 1.08997 * 109.54894 * 303.84553 * 10 9 8 38 38 H 1.08994 * 109.54946 * 56.43888 * 14 6 5 39 39 H 1.09001 * 109.62582 * 296.19539 * 14 6 5 40 40 H 1.09002 * 112.93827 * 168.41357 * 15 2 1 41 41 H 1.08999 * 113.76927 * 336.34615 * 16 15 2 42 42 H 1.08997 * 113.76753 * 107.74265 * 16 15 2 43 43 H 0.97007 * 119.99494 * 180.02562 * 21 20 18 44 44 H 1.09005 * 113.76641 * 221.05521 * 26 17 16 45 45 H 1.08998 * 113.77725 * 89.65987 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1671 0.0005 5 6 1.3854 2.4722 -0.0006 6 6 2.3797 3.6352 -0.0011 7 1 3.0606 3.5293 0.8435 8 6 3.1768 3.6172 -1.3026 9 6 4.3417 4.6003 -1.2328 10 6 3.8133 6.0364 -1.2550 11 16 2.8107 6.3207 0.2330 12 8 3.6282 6.1193 1.3777 13 8 2.1139 7.5502 0.0837 14 6 1.6166 4.9559 0.1241 15 6 2.1975 -1.2688 0.0006 16 6 1.5286 -2.3710 -0.8408 17 7 1.8682 -3.2838 0.2681 18 6 2.0736 -4.6336 0.3712 19 1 2.3180 -5.0712 1.3279 20 6 1.9678 -5.4397 -0.7540 21 7 1.6694 -4.9066 -1.9198 22 14 2.2487 -7.2812 -0.6135 23 1 2.5687 -7.6270 0.7948 24 1 1.0209 -8.0028 -1.0342 25 1 3.3805 -7.6774 -1.4895 26 6 1.8971 -2.1574 1.2212 27 1 -0.3632 -0.0002 -1.0277 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3634 0.8900 0.5136 30 1 0.7584 2.5302 0.8891 31 1 0.7591 2.5298 -0.8909 32 1 2.5232 3.8929 -2.1301 33 1 3.5643 2.6124 -1.4710 34 1 4.9992 4.4434 -2.0879 35 1 4.9004 4.4344 -0.3116 36 1 4.6515 6.7332 -1.2686 37 1 3.1989 6.1853 -2.1428 38 1 1.0007 4.9374 1.0231 39 1 0.9813 5.0960 -0.7505 40 1 3.2615 -1.1452 -0.2011 41 1 0.4570 -2.2281 -0.9799 42 1 2.0534 -2.5939 -1.7697 43 1 1.5951 -5.4700 -2.7059 44 1 2.7161 -2.2099 1.9386 45 1 0.9338 -1.9518 1.6879 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044149511.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:49 Heat of formation + Delta-G solvation = -79.011343 kcal Electronic energy + Delta-G solvation = -26797.731771 eV Core-core repulsion = 22943.344667 eV Total energy + Delta-G solvation = -3854.387104 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -41.34137 -39.63376 -38.26381 -37.60559 -37.02589 -35.85775 -34.13350 -33.66630 -30.12471 -29.00235 -28.19999 -27.76919 -26.60637 -25.08790 -23.52142 -21.98868 -20.91880 -19.89494 -19.66592 -18.85425 -18.18748 -17.68719 -17.32328 -17.10303 -16.74244 -16.67734 -16.53859 -15.90562 -15.66349 -15.36436 -14.87373 -14.62677 -14.30398 -13.92139 -13.84544 -13.72654 -13.48625 -13.38433 -13.19922 -13.16266 -13.05033 -13.03425 -12.98179 -12.80650 -12.56751 -12.46706 -12.19234 -12.07382 -11.93829 -11.91953 -11.68371 -11.55046 -11.52013 -10.91483 -10.89895 -10.56123 -9.47158 -8.96785 -7.94621 -5.28455 -0.85600 1.45076 1.46349 1.56549 1.72999 1.78946 2.07587 2.47947 2.77957 3.02372 3.25702 3.40184 3.50116 3.64637 3.79036 3.82328 3.86377 3.99775 4.03481 4.25524 4.30983 4.37668 4.44656 4.48963 4.56005 4.67071 4.69981 4.73767 4.77043 4.84766 4.86593 4.91178 5.04829 5.05016 5.15815 5.19319 5.25968 5.40250 5.45578 5.46751 5.73597 5.89177 6.58168 6.88480 7.29609 7.55906 8.49683 9.22472 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.035754 B = 0.002258 C = 0.002225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.942667 B =12396.050136 C =12579.437505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.603 5.603 3 C 0.502 3.498 4 O -0.582 6.582 5 C -0.124 4.124 6 C -0.066 4.066 7 H 0.076 0.924 8 C -0.147 4.147 9 C -0.110 4.110 10 C -0.587 4.587 11 S 2.412 3.588 12 O -0.987 6.987 13 O -0.984 6.984 14 C -0.581 4.581 15 C 0.117 3.883 16 C 0.162 3.838 17 N -0.638 5.638 18 C -0.235 4.235 19 H 0.084 0.916 20 C -0.065 4.065 21 N -0.952 5.952 22 Si 0.981 3.019 23 H -0.266 1.266 24 H -0.289 1.289 25 H -0.292 1.292 26 C 0.112 3.888 27 H 0.067 0.933 28 H 0.062 0.938 29 H 0.111 0.889 30 H 0.126 0.874 31 H 0.131 0.869 32 H 0.101 0.899 33 H 0.075 0.925 34 H 0.094 0.906 35 H 0.066 0.934 36 H 0.142 0.858 37 H 0.164 0.836 38 H 0.155 0.845 39 H 0.174 0.826 40 H 0.091 0.909 41 H 0.039 0.961 42 H 0.037 0.963 43 H 0.250 0.750 44 H 0.046 0.954 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.296 23.567 -0.037 23.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.335 5.335 3 C 0.292 3.708 4 O -0.462 6.462 5 C -0.164 4.164 6 C -0.086 4.086 7 H 0.095 0.905 8 C -0.184 4.184 9 C -0.149 4.149 10 C -0.718 4.718 11 S 2.601 3.399 12 O -0.985 6.985 13 O -0.981 6.981 14 C -0.713 4.713 15 C 0.012 3.988 16 C 0.036 3.964 17 N -0.365 5.365 18 C -0.363 4.363 19 H 0.102 0.898 20 C -0.258 4.258 21 N -0.600 5.600 22 Si 0.809 3.191 23 H -0.190 1.190 24 H -0.216 1.216 25 H -0.219 1.219 26 C -0.014 4.014 27 H 0.086 0.914 28 H 0.081 0.919 29 H 0.130 0.870 30 H 0.144 0.856 31 H 0.149 0.851 32 H 0.119 0.881 33 H 0.094 0.906 34 H 0.113 0.887 35 H 0.085 0.915 36 H 0.160 0.840 37 H 0.182 0.818 38 H 0.173 0.827 39 H 0.192 0.808 40 H 0.109 0.891 41 H 0.057 0.943 42 H 0.055 0.945 43 H 0.059 0.941 44 H 0.064 0.936 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -3.573 23.970 0.551 24.241 hybrid contribution 0.247 -2.025 -0.580 2.121 sum -3.325 21.945 -0.030 22.195 Atomic orbital electron populations 1.22053 0.77426 1.04484 1.03146 1.48061 1.08303 1.04935 1.72203 1.21514 0.87977 0.86425 0.74839 1.90661 1.16037 1.87893 1.51609 1.21841 0.98661 0.88205 1.07685 1.20645 0.96332 0.91554 1.00029 0.90544 1.21952 0.97433 1.01518 0.97524 1.21243 0.99038 0.89893 1.04704 1.30105 1.15513 1.05678 1.20516 1.07806 0.77829 0.76610 0.77676 1.93540 1.68827 1.87100 1.48999 1.93548 1.74286 1.42740 1.87512 1.30181 1.15129 1.11132 1.14845 1.23186 0.96819 0.81684 0.97158 1.22482 0.96601 0.84830 0.92490 1.46002 1.81463 1.02347 1.06723 1.19404 1.40075 0.81796 0.95050 0.89823 1.25644 1.02358 1.02612 0.95213 1.70003 1.55556 1.35305 0.99163 0.84980 0.76889 0.79471 0.77785 1.19031 1.21594 1.21944 1.23086 0.99060 0.85662 0.93547 0.91434 0.91907 0.87047 0.85602 0.85111 0.88058 0.90649 0.88736 0.91487 0.83977 0.81791 0.82702 0.80828 0.89109 0.94330 0.94453 0.94114 0.93562 0.92330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.34 8.84 127.77 1.13 2.47 16 2 N -0.60 -16.52 3.09 -828.32 -2.56 -19.08 16 3 C 0.50 12.71 7.29 87.65 0.64 13.35 16 4 O -0.58 -19.69 13.49 -3.04 -0.04 -19.73 16 5 C -0.12 -1.59 3.72 29.85 0.11 -1.48 16 6 C -0.07 -0.90 1.68 -10.90 -0.02 -0.92 16 7 H 0.08 1.45 7.83 -2.39 -0.02 1.43 16 8 C -0.15 -2.07 4.72 30.34 0.14 -1.92 16 9 C -0.11 -1.46 5.74 30.47 0.17 -1.29 16 10 C -0.59 -5.18 6.34 72.00 0.46 -4.72 16 11 S 2.41 33.88 5.30 -56.49 -0.30 33.58 16 12 O -0.99 -23.55 17.94 -127.38 -2.28 -25.84 16 13 O -0.98 -20.14 18.11 -127.38 -2.31 -22.44 16 14 C -0.58 -4.26 5.62 72.00 0.40 -3.85 16 15 C 0.12 4.46 4.40 46.75 0.21 4.67 16 16 C 0.16 7.47 6.93 86.48 0.60 8.07 16 17 N -0.64 -32.60 3.70 -717.39 -2.65 -35.25 16 18 C -0.23 -13.17 10.70 84.04 0.90 -12.27 16 19 H 0.08 4.51 7.83 -2.91 -0.02 4.49 16 20 C -0.07 -3.69 5.50 84.86 0.47 -3.22 16 21 N -0.95 -56.69 11.38 21.65 0.25 -56.44 16 22 Si 0.98 45.40 29.55 68.60 2.03 47.43 16 23 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 24 H -0.29 -13.23 7.11 99.48 0.71 -12.53 16 25 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 26 C 0.11 4.52 8.46 86.48 0.73 5.25 16 27 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 28 H 0.06 1.42 6.36 -2.38 -0.02 1.41 16 29 H 0.11 1.11 6.44 -2.39 -0.02 1.09 16 30 H 0.13 0.96 7.40 -2.39 -0.02 0.95 16 31 H 0.13 0.89 8.11 -2.38 -0.02 0.88 16 32 H 0.10 0.75 8.09 -2.39 -0.02 0.73 16 33 H 0.07 1.62 5.75 -2.39 -0.01 1.61 16 34 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.07 1.14 8.01 -2.38 -0.02 1.12 16 36 H 0.14 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.16 0.42 8.14 -2.39 -0.02 0.40 16 38 H 0.15 0.65 8.14 -2.39 -0.02 0.63 16 39 H 0.17 0.00 8.14 -2.39 -0.02 -0.02 16 40 H 0.09 3.93 7.24 -2.39 -0.02 3.91 16 41 H 0.04 1.71 6.71 -2.39 -0.02 1.69 16 42 H 0.04 1.99 7.15 -2.39 -0.02 1.98 16 43 H 0.25 14.39 8.31 -92.70 -0.77 13.62 16 44 H 0.05 1.85 8.14 -2.38 -0.02 1.83 16 45 H 0.06 2.11 6.97 -2.39 -0.02 2.09 16 Total: -1.00 -85.90 363.02 -0.94 -86.84 By element: Atomic # 1 Polarization: 5.81 SS G_CDS: 0.99 Total: 6.80 kcal Atomic # 6 Polarization: -1.81 SS G_CDS: 5.94 Total: 4.13 kcal Atomic # 7 Polarization: -105.80 SS G_CDS: -4.97 Total: -110.77 kcal Atomic # 8 Polarization: -63.38 SS G_CDS: -4.63 Total: -68.01 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.43 kcal Atomic # 16 Polarization: 33.88 SS G_CDS: -0.30 Total: 33.58 kcal Total: -85.90 -0.94 -86.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044149511.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.829 kcal (2) G-P(sol) polarization free energy of solvation -85.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds