Wall clock time and date at job start Tue Mar 31 2020 05:45:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42898 * 113.99482 * 2 1 4 4 C 1.50697 * 109.47276 * 179.97438 * 3 2 1 5 5 O 1.21284 * 119.99694 * 0.02562 * 4 3 2 6 6 N 1.34778 * 120.00689 * 179.97438 * 4 3 2 7 7 C 1.46493 * 120.00290 * 180.02562 * 6 4 3 8 8 C 1.52999 * 109.47282 * 180.02562 * 7 6 4 9 9 C 1.52996 * 109.47288 * 179.97438 * 8 7 6 10 10 H 1.08994 * 110.91725 * 302.54803 * 9 8 7 11 11 C 1.55164 * 111.00141 * 178.64594 * 9 8 7 12 12 C 1.54330 * 102.94081 * 206.42304 * 11 9 8 13 13 N 1.47026 * 107.26840 * 22.19556 * 12 11 9 14 14 C 1.34775 * 125.64611 * 181.02123 * 13 12 11 15 15 O 1.21283 * 120.00103 * 180.02562 * 14 13 12 16 16 C 1.50704 * 119.99927 * 0.02745 * 14 13 12 17 17 S 1.80999 * 109.46954 * 180.02562 * 16 14 13 18 18 C 1.76208 * 100.00025 * 179.97438 * 17 16 14 19 19 H 1.08004 * 119.99802 * 359.97438 * 18 17 16 20 20 C 1.38794 * 119.99924 * 179.97438 * 18 17 16 21 21 N 1.31628 * 120.00470 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99851 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47236 * 89.99856 * 22 20 18 24 24 H 1.48497 * 109.47356 * 209.99795 * 22 20 18 25 25 H 1.48504 * 109.46858 * 329.99864 * 22 20 18 26 26 C 1.47422 * 108.70500 * 1.05856 * 13 12 11 27 27 H 1.08992 * 109.47733 * 299.99889 * 1 2 3 28 28 H 1.09007 * 109.47499 * 60.00418 * 1 2 3 29 29 H 1.08999 * 109.46726 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47438 * 59.99933 * 3 2 1 31 31 H 1.09004 * 109.47099 * 299.99905 * 3 2 1 32 32 H 0.96999 * 119.99594 * 0.02562 * 6 4 3 33 33 H 1.08994 * 109.47412 * 60.00012 * 7 6 4 34 34 H 1.09004 * 109.47070 * 299.99854 * 7 6 4 35 35 H 1.09003 * 109.47377 * 59.99589 * 8 7 6 36 36 H 1.09004 * 109.46754 * 299.99809 * 8 7 6 37 37 H 1.08999 * 110.71932 * 88.06637 * 11 9 8 38 38 H 1.08995 * 110.72046 * 324.78892 * 11 9 8 39 39 H 1.08998 * 109.88224 * 262.77875 * 12 11 9 40 40 H 1.08998 * 109.88221 * 141.61268 * 12 11 9 41 41 H 1.09002 * 109.46914 * 299.99993 * 16 14 13 42 42 H 1.08991 * 109.47478 * 59.99879 * 16 14 13 43 43 H 0.96999 * 120.00084 * 179.97438 * 21 20 18 44 44 H 1.08996 * 110.36785 * 94.70778 * 26 13 12 45 45 H 1.09004 * 110.36699 * 216.92190 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5124 1.1867 0.0006 5 8 4.0340 0.0918 0.0006 6 7 4.2763 2.2970 0.0002 7 6 5.7367 2.1814 0.0003 8 6 6.3590 3.5792 0.0004 9 6 7.8842 3.4584 0.0011 10 1 8.2285 2.8818 0.8595 11 6 8.5528 4.8582 -0.0330 12 6 9.9163 4.5738 -0.6977 13 7 9.7773 3.3255 -1.4620 14 6 10.7539 2.7261 -2.1715 15 8 10.5253 1.6943 -2.7665 16 6 12.1301 3.3380 -2.2256 17 16 13.2089 2.3071 -3.2499 18 6 14.7061 3.2299 -3.1426 19 1 14.7389 4.1404 -2.5625 20 6 15.8433 2.7869 -3.8035 21 7 15.8036 1.6770 -4.5101 22 14 17.4308 3.7649 -3.6892 23 1 18.2228 3.2888 -2.5268 24 1 18.2180 3.5783 -4.9344 25 1 17.1133 5.2051 -3.5153 26 6 8.3927 2.8386 -1.3244 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 1.6884 1.8464 0.8900 31 1 1.6884 1.8464 -0.8900 32 1 3.8591 3.1727 -0.0001 33 1 6.0584 1.6402 -0.8894 34 1 6.0583 1.6409 0.8905 35 1 6.0373 4.1201 0.8904 36 1 6.0373 4.1201 -0.8896 37 1 8.6894 5.2450 0.9769 38 1 7.9665 5.5510 -0.6365 39 1 10.6842 4.4568 0.0669 40 1 10.1795 5.3917 -1.3683 41 1 12.0667 4.3372 -2.6566 42 1 12.5389 3.4026 -1.2174 43 1 16.5983 1.3676 -4.9723 44 1 7.7849 3.1819 -2.1614 45 1 8.3773 1.7502 -1.2665 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001059197329.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:11 Heat of formation + Delta-G solvation = -121.219850 kcal Electronic energy + Delta-G solvation = -24788.577813 eV Core-core repulsion = 20932.360411 eV Total energy + Delta-G solvation = -3856.217402 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.25148 -39.80150 -38.01497 -37.51455 -35.57221 -33.13156 -32.41732 -30.64359 -29.62995 -29.22082 -27.33351 -26.14593 -25.46186 -24.07350 -22.41615 -21.28099 -20.41010 -19.32455 -17.78646 -17.72107 -17.19654 -16.84948 -16.58893 -16.44730 -15.80142 -15.59583 -15.03818 -14.93853 -14.79384 -14.48766 -14.12665 -13.89214 -13.63291 -13.42555 -13.27944 -12.83665 -12.75610 -12.57476 -12.50443 -12.34720 -11.97591 -11.85033 -11.74157 -11.38740 -11.05801 -11.02206 -10.97305 -10.95714 -10.74929 -10.32548 -10.15720 -9.80365 -9.48789 -9.39040 -9.05469 -8.49085 -8.21635 -6.48852 -6.20221 -3.91004 2.23190 2.37043 2.93202 3.08368 3.23123 3.26853 3.31166 3.56867 3.63814 4.07652 4.21567 4.24876 4.35418 4.39413 4.53423 4.60673 4.74000 4.78936 4.80722 4.85722 5.00660 5.08095 5.10592 5.14804 5.18480 5.19711 5.32863 5.46971 5.52641 5.59765 5.63537 5.64857 5.73550 5.83028 5.95760 5.97337 5.98798 6.15167 6.44160 6.45015 7.04352 7.60466 7.68752 7.83034 8.36355 8.57903 9.24818 10.87220 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.029420 B = 0.001708 C = 0.001627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.519377 B =16388.870935 C =17201.159597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.367 6.367 3 C 0.043 3.957 4 C 0.510 3.490 5 O -0.514 6.514 6 N -0.731 5.731 7 C 0.116 3.884 8 C -0.117 4.117 9 C -0.100 4.100 10 H 0.090 0.910 11 C -0.124 4.124 12 C 0.101 3.899 13 N -0.627 5.627 14 C 0.547 3.453 15 O -0.515 6.515 16 C -0.146 4.146 17 S -0.061 6.061 18 C -0.535 4.535 19 H 0.072 0.928 20 C 0.074 3.926 21 N -0.867 5.867 22 Si 0.919 3.081 23 H -0.277 1.277 24 H -0.282 1.282 25 H -0.272 1.272 26 C 0.110 3.890 27 H 0.044 0.956 28 H 0.044 0.956 29 H 0.092 0.908 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.400 0.600 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.082 0.918 38 H 0.077 0.923 39 H 0.069 0.931 40 H 0.069 0.931 41 H 0.088 0.912 42 H 0.088 0.912 43 H 0.268 0.732 44 H 0.065 0.935 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.546 9.537 13.295 33.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.284 6.284 3 C -0.037 4.037 4 C 0.294 3.706 5 O -0.387 6.387 6 N -0.385 5.385 7 C -0.008 4.008 8 C -0.155 4.155 9 C -0.119 4.119 10 H 0.109 0.891 11 C -0.162 4.162 12 C -0.022 4.022 13 N -0.365 5.365 14 C 0.336 3.664 15 O -0.389 6.389 16 C -0.297 4.297 17 S 0.166 5.834 18 C -0.684 4.684 19 H 0.090 0.910 20 C -0.136 4.136 21 N -0.502 5.502 22 Si 0.745 3.255 23 H -0.203 1.203 24 H -0.207 1.207 25 H -0.197 1.197 26 C -0.013 4.013 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.110 0.890 30 H 0.098 0.902 31 H 0.099 0.901 32 H 0.234 0.766 33 H 0.093 0.907 34 H 0.090 0.910 35 H 0.094 0.906 36 H 0.093 0.907 37 H 0.101 0.899 38 H 0.096 0.904 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.107 0.893 42 H 0.107 0.893 43 H 0.078 0.922 44 H 0.083 0.917 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -29.206 6.827 12.227 32.390 hybrid contribution 0.880 2.632 0.777 2.883 sum -28.325 9.460 13.005 32.572 Atomic orbital electron populations 1.22857 0.80193 1.03519 1.00129 1.88039 1.19925 1.25052 1.95412 1.22234 0.91610 0.87206 1.02625 1.20280 0.88725 0.84661 0.76901 1.90782 1.74549 1.26450 1.46960 1.45869 1.07310 1.08638 1.76699 1.21473 0.78308 0.97669 1.03302 1.21719 0.94386 0.96178 1.03231 1.22314 0.93891 0.97102 0.98634 0.89145 1.22684 0.95412 0.96612 1.01498 1.21991 0.97887 0.87009 0.95346 1.48496 1.10673 1.25748 1.51590 1.20039 0.85083 0.83938 0.77354 1.90718 1.81919 1.23062 1.43170 1.23503 0.95409 1.04792 1.05972 1.85426 1.04021 1.32193 1.61804 1.22859 0.96300 1.12183 1.37015 0.90950 1.24989 0.98779 0.95284 0.94498 1.70019 1.29706 1.20720 1.29796 0.86168 0.81684 0.79839 0.77799 1.20267 1.20742 1.19711 1.22246 0.82716 1.00248 0.96112 0.93766 0.93715 0.88951 0.90232 0.90149 0.76592 0.90744 0.91044 0.90584 0.90674 0.89901 0.90396 0.91251 0.91268 0.89347 0.89322 0.92176 0.91681 0.90253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 11.01 101.05 1.11 1.26 16 2 O -0.37 -3.42 10.24 -55.14 -0.56 -3.98 16 3 C 0.04 0.26 6.42 36.00 0.23 0.50 16 4 C 0.51 4.79 7.91 -10.99 -0.09 4.70 16 5 O -0.51 -7.73 16.50 -14.36 -0.24 -7.97 16 6 N -0.73 -4.46 5.56 -60.30 -0.33 -4.80 16 7 C 0.12 0.85 5.52 -4.05 -0.02 0.82 16 8 C -0.12 -0.58 4.84 -26.73 -0.13 -0.71 16 9 C -0.10 -0.73 3.07 -88.47 -0.27 -1.01 16 10 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 11 C -0.12 -0.82 6.42 -24.89 -0.16 -0.98 16 12 C 0.10 1.04 6.49 -3.06 -0.02 1.02 16 13 N -0.63 -9.09 3.33 -170.52 -0.57 -9.66 16 14 C 0.55 10.86 7.87 -10.98 -0.09 10.77 16 15 O -0.51 -12.34 16.12 5.56 0.09 -12.25 16 16 C -0.15 -3.06 5.35 36.01 0.19 -2.87 16 17 S -0.06 -1.70 20.57 -107.50 -2.21 -3.91 16 18 C -0.54 -15.41 9.50 30.94 0.29 -15.12 16 19 H 0.07 1.97 7.80 -52.48 -0.41 1.56 16 20 C 0.07 2.12 5.49 -17.43 -0.10 2.03 16 21 N -0.87 -26.41 13.22 55.49 0.73 -25.67 16 22 Si 0.92 21.52 29.55 -169.99 -5.02 16.49 16 23 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 24 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 25 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 26 C 0.11 1.28 5.57 -2.53 -0.01 1.26 16 27 H 0.04 0.14 8.14 -51.93 -0.42 -0.28 16 28 H 0.04 0.15 8.14 -51.93 -0.42 -0.27 16 29 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.08 0.26 8.14 -51.93 -0.42 -0.17 16 31 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.40 0.96 8.47 -40.82 -0.35 0.62 16 33 H 0.07 0.71 7.46 -51.93 -0.39 0.32 16 34 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 36 H 0.07 0.32 8.10 -51.93 -0.42 -0.10 16 37 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 38 H 0.08 0.43 8.04 -51.93 -0.42 0.02 16 39 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 40 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 41 H 0.09 1.71 8.14 -51.91 -0.42 1.29 16 42 H 0.09 1.72 8.14 -51.92 -0.42 1.30 16 43 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 44 H 0.06 0.72 8.00 -51.93 -0.42 0.31 16 45 H 0.08 1.07 7.96 -51.93 -0.41 0.66 16 LS Contribution 391.85 15.07 5.91 5.91 Total: -1.00 -40.14 391.85 -8.71 -48.84 By element: Atomic # 1 Polarization: 2.76 SS G_CDS: -7.44 Total: -4.68 kcal Atomic # 6 Polarization: 0.74 SS G_CDS: 0.94 Total: 1.68 kcal Atomic # 7 Polarization: -39.96 SS G_CDS: -0.17 Total: -40.13 kcal Atomic # 8 Polarization: -23.50 SS G_CDS: -0.71 Total: -24.21 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.49 kcal Atomic # 16 Polarization: -1.70 SS G_CDS: -2.21 Total: -3.91 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -40.14 -8.71 -48.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001059197329.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.375 kcal (2) G-P(sol) polarization free energy of solvation -40.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds