Wall clock time and date at job start Tue Mar 31 2020 05:45:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42896 * 114.00409 * 2 1 4 4 C 1.50693 * 109.47157 * 180.02562 * 3 2 1 5 5 O 1.21286 * 120.00295 * 0.02562 * 4 3 2 6 6 N 1.34780 * 120.00091 * 179.97438 * 4 3 2 7 7 C 1.46499 * 120.00088 * 179.97438 * 6 4 3 8 8 C 1.53003 * 109.47131 * 185.82757 * 7 6 4 9 9 H 1.08999 * 109.70033 * 53.07905 * 8 7 6 10 10 C 1.53197 * 109.58480 * 173.43145 * 8 7 6 11 11 C 1.53039 * 109.33351 * 174.43762 * 10 8 7 12 12 C 1.53038 * 109.54300 * 298.61920 * 11 10 8 13 13 C 1.53190 * 109.31092 * 61.36453 * 12 11 10 14 14 N 1.46922 * 108.77800 * 305.37110 * 13 12 11 15 15 C 1.34776 * 120.62810 * 233.63038 * 14 13 12 16 16 O 1.21287 * 120.00120 * 174.40199 * 15 14 13 17 17 C 1.50705 * 120.00141 * 354.39952 * 15 14 13 18 18 S 1.80998 * 109.47357 * 180.02562 * 17 15 14 19 19 C 1.76199 * 100.00030 * 179.97438 * 18 17 15 20 20 H 1.07995 * 119.99990 * 0.02562 * 19 18 17 21 21 C 1.38800 * 119.99805 * 179.97438 * 19 18 17 22 22 N 1.31629 * 120.00067 * 180.02562 * 21 19 18 23 23 Si 1.86807 * 120.00131 * 0.02562 * 21 19 18 24 24 H 1.48498 * 109.46716 * 89.99840 * 23 21 19 25 25 H 1.48503 * 109.47047 * 209.99879 * 23 21 19 26 26 H 1.48496 * 109.46969 * 330.00250 * 23 21 19 27 27 H 1.09001 * 109.46982 * 59.99661 * 1 2 3 28 28 H 1.08989 * 109.47406 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46795 * 299.99989 * 1 2 3 30 30 H 1.09005 * 109.47132 * 60.00256 * 3 2 1 31 31 H 1.08999 * 109.46938 * 300.00538 * 3 2 1 32 32 H 0.96999 * 119.99720 * 0.02562 * 6 4 3 33 33 H 1.08997 * 109.47286 * 65.82726 * 7 6 4 34 34 H 1.09006 * 109.47297 * 305.82791 * 7 6 4 35 35 H 1.08999 * 109.49783 * 54.47224 * 10 8 7 36 36 H 1.08998 * 109.49699 * 294.40736 * 10 8 7 37 37 H 1.09001 * 109.45989 * 58.64336 * 11 10 8 38 38 H 1.08999 * 109.45674 * 178.59794 * 11 10 8 39 39 H 1.09000 * 109.49954 * 181.31814 * 12 11 10 40 40 H 1.08999 * 109.49217 * 301.38256 * 12 11 10 41 41 H 1.09003 * 109.58357 * 65.15727 * 13 12 11 42 42 H 1.08998 * 109.58474 * 185.57669 * 13 12 11 43 43 H 1.09001 * 109.47250 * 300.00250 * 17 15 14 44 44 H 1.08995 * 109.46850 * 60.00257 * 17 15 14 45 45 H 0.96995 * 120.00134 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0104 1.3054 0.0000 4 6 3.5126 1.1863 -0.0006 5 8 4.0342 0.0913 -0.0015 6 7 4.2766 2.2966 -0.0013 7 6 5.7370 2.1808 -0.0013 8 6 6.3589 3.5712 0.1444 9 1 5.9385 4.0722 1.0164 10 6 7.8763 3.4403 0.3092 11 6 8.5074 4.8345 0.3151 12 6 8.2253 5.5298 -1.0187 13 6 6.7119 5.6849 -1.1990 14 7 6.0815 4.3650 -1.0612 15 6 5.2646 3.8905 -2.0225 16 8 4.8311 2.7603 -1.9465 17 6 4.8896 4.7644 -3.1917 18 16 3.7896 3.8496 -4.3004 19 6 3.5181 5.0725 -5.5395 20 1 3.9869 6.0415 -5.4537 21 6 2.7024 4.7899 -6.6264 22 7 2.4999 5.7032 -7.5523 23 14 1.8920 3.1133 -6.7751 24 1 0.5673 3.1427 -6.1047 25 1 1.7131 2.7756 -8.2102 26 1 2.7513 2.0891 -6.1288 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0275 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.6888 1.8463 0.8900 31 1 1.6887 1.8463 -0.8899 32 1 3.8595 3.1723 -0.0009 33 1 6.0659 1.7322 -0.9386 34 1 6.0518 1.5529 0.8322 35 1 8.2835 2.8602 -0.5188 36 1 8.0980 2.9366 1.2501 37 1 8.0817 5.4224 1.1283 38 1 9.5844 4.7450 0.4573 39 1 8.6949 6.5135 -1.0227 40 1 8.6298 4.9302 -1.8341 41 1 6.3203 6.3583 -0.4366 42 1 6.5015 6.0889 -2.1892 43 1 4.3795 5.6569 -2.8294 44 1 5.7907 5.0549 -3.7317 45 1 1.9296 5.5059 -8.3117 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001062018475.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:13 Heat of formation + Delta-G solvation = -84.488898 kcal Electronic energy + Delta-G solvation = -27258.871583 eV Core-core repulsion = 23404.246955 eV Total energy + Delta-G solvation = -3854.624628 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.81658 -39.14840 -37.36276 -37.24916 -34.71107 -33.07028 -32.48120 -31.88736 -29.23761 -28.96674 -26.75506 -25.69081 -25.51928 -24.37441 -22.36723 -21.17797 -20.36853 -19.23367 -17.76358 -17.24243 -16.74540 -16.46019 -16.20820 -16.03550 -15.59298 -15.13082 -15.02598 -14.74790 -14.56190 -14.39631 -14.12382 -13.91523 -13.48172 -13.31438 -13.06047 -12.81948 -12.81068 -12.67774 -12.37258 -12.18769 -11.91212 -11.46265 -11.44726 -11.29953 -11.23342 -11.05350 -10.94448 -10.86010 -10.63394 -9.89074 -9.76626 -9.52872 -9.05650 -8.98926 -8.90089 -8.53484 -8.26011 -6.96762 -6.33382 -4.05394 2.61876 2.75158 2.99733 3.10157 3.13211 3.28547 3.48004 3.53931 4.15454 4.28234 4.33682 4.52136 4.60154 4.67929 4.79591 4.89447 4.97885 4.98582 5.05945 5.09429 5.13712 5.22787 5.27636 5.31402 5.39373 5.44719 5.47116 5.57195 5.61656 5.65637 5.68082 5.68904 5.77661 5.79370 5.94265 6.01786 6.16646 6.51291 6.69688 7.00615 7.37806 7.74145 7.89573 8.36679 8.37867 8.55695 9.12985 10.75836 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.007702 B = 0.005403 C = 0.003331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3634.637848 B = 5180.608106 C = 8404.480497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.367 6.367 3 C 0.043 3.957 4 C 0.522 3.478 5 O -0.534 6.534 6 N -0.692 5.692 7 C 0.136 3.864 8 C 0.138 3.862 9 H 0.076 0.924 10 C -0.128 4.128 11 C -0.117 4.117 12 C -0.137 4.137 13 C 0.109 3.891 14 N -0.618 5.618 15 C 0.518 3.482 16 O -0.491 6.491 17 C -0.122 4.122 18 S -0.140 6.140 19 C -0.522 4.522 20 H 0.087 0.913 21 C 0.097 3.903 22 N -0.880 5.880 23 Si 0.855 3.145 24 H -0.268 1.268 25 H -0.274 1.274 26 H -0.235 1.235 27 H 0.045 0.955 28 H 0.088 0.912 29 H 0.040 0.960 30 H 0.072 0.928 31 H 0.085 0.915 32 H 0.394 0.606 33 H 0.090 0.910 34 H 0.062 0.938 35 H 0.072 0.928 36 H 0.076 0.924 37 H 0.064 0.936 38 H 0.066 0.934 39 H 0.075 0.925 40 H 0.069 0.931 41 H 0.068 0.932 42 H 0.091 0.909 43 H 0.093 0.907 44 H 0.094 0.906 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.741 0.475 19.619 20.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.284 6.284 3 C -0.037 4.037 4 C 0.307 3.693 5 O -0.411 6.411 6 N -0.344 5.344 7 C 0.013 3.987 8 C 0.034 3.966 9 H 0.093 0.907 10 C -0.167 4.167 11 C -0.154 4.154 12 C -0.176 4.176 13 C -0.014 4.014 14 N -0.356 5.356 15 C 0.305 3.695 16 O -0.364 6.364 17 C -0.272 4.272 18 S 0.086 5.914 19 C -0.669 4.669 20 H 0.105 0.895 21 C -0.112 4.112 22 N -0.516 5.516 23 Si 0.680 3.320 24 H -0.193 1.193 25 H -0.199 1.199 26 H -0.159 1.159 27 H 0.064 0.936 28 H 0.107 0.893 29 H 0.059 0.941 30 H 0.090 0.910 31 H 0.103 0.897 32 H 0.228 0.772 33 H 0.108 0.892 34 H 0.080 0.920 35 H 0.091 0.909 36 H 0.095 0.905 37 H 0.082 0.918 38 H 0.085 0.915 39 H 0.094 0.906 40 H 0.088 0.912 41 H 0.086 0.914 42 H 0.109 0.891 43 H 0.111 0.889 44 H 0.112 0.888 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 6.490 -2.132 19.538 20.698 hybrid contribution -0.347 1.746 -0.575 1.870 sum 6.143 -0.387 18.963 19.937 Atomic orbital electron populations 1.22817 0.80741 1.03010 1.00125 1.87994 1.19496 1.25537 1.95421 1.22240 0.92283 0.86702 1.02453 1.19912 0.88258 0.84528 0.76559 1.90675 1.74635 1.26596 1.49179 1.45618 1.06453 1.08202 1.74142 1.21392 0.79833 0.94675 1.02785 1.21471 0.95720 0.91844 0.87565 0.90651 1.21892 0.93857 0.97940 1.03012 1.21485 1.00726 0.95708 0.97514 1.21939 0.95897 1.01438 0.98280 1.21737 0.92570 0.83917 1.03204 1.48139 1.48401 1.18983 1.20093 1.20361 0.78006 0.88107 0.83022 1.90895 1.52720 1.17900 1.74870 1.23344 1.04158 1.02139 0.97607 1.84812 1.60105 1.22735 1.23758 1.22300 1.35564 1.00910 1.08165 0.89480 1.24698 0.94973 0.97276 0.94224 1.69932 1.37001 1.33821 1.10888 0.86761 0.81531 0.85068 0.78642 1.19282 1.19912 1.15910 0.93591 0.89343 0.94122 0.91033 0.89731 0.77249 0.89220 0.91961 0.90892 0.90547 0.91761 0.91511 0.90636 0.91203 0.91413 0.89107 0.88850 0.88791 0.91918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 11.01 101.05 1.11 1.44 16 2 O -0.37 -5.81 10.24 -55.14 -0.56 -6.37 16 3 C 0.04 0.61 6.42 36.00 0.23 0.84 16 4 C 0.52 8.78 7.59 -10.99 -0.08 8.70 16 5 O -0.53 -11.26 16.49 -14.36 -0.24 -11.50 16 6 N -0.69 -9.69 3.13 -60.29 -0.19 -9.88 16 7 C 0.14 1.79 4.29 -4.04 -0.02 1.77 16 8 C 0.14 1.35 2.95 -67.56 -0.20 1.15 16 9 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 10 C -0.13 -1.03 5.37 -26.61 -0.14 -1.17 16 11 C -0.12 -0.78 5.88 -26.69 -0.16 -0.93 16 12 C -0.14 -1.03 6.08 -26.61 -0.16 -1.19 16 13 C 0.11 0.96 6.33 -3.71 -0.02 0.94 16 14 N -0.62 -7.00 2.97 -165.17 -0.49 -7.49 16 15 C 0.52 8.09 7.00 -10.98 -0.08 8.01 16 16 O -0.49 -9.07 9.52 5.55 0.05 -9.02 16 17 C -0.12 -2.18 4.57 36.01 0.16 -2.01 16 18 S -0.14 -3.39 18.55 -107.50 -1.99 -5.38 16 19 C -0.52 -14.59 10.04 30.94 0.31 -14.27 16 20 H 0.09 2.54 8.03 -52.49 -0.42 2.12 16 21 C 0.10 2.78 5.50 -17.43 -0.10 2.69 16 22 N -0.88 -26.14 13.97 55.49 0.78 -25.36 16 23 Si 0.86 21.55 27.74 -169.99 -4.72 16.84 16 24 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 25 H -0.27 -6.70 7.11 56.52 0.40 -6.29 16 26 H -0.24 -5.99 6.74 56.52 0.38 -5.60 16 27 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.09 0.85 8.14 -51.94 -0.42 0.42 16 29 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.39 4.85 7.64 -40.82 -0.31 4.54 16 33 H 0.09 1.49 6.49 -51.93 -0.34 1.16 16 34 H 0.06 0.78 8.12 -51.93 -0.42 0.36 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 39 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 40 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 42 H 0.09 0.87 5.96 -51.93 -0.31 0.56 16 43 H 0.09 1.55 8.12 -51.91 -0.42 1.13 16 44 H 0.09 1.62 7.46 -51.92 -0.39 1.23 16 45 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 372.56 15.07 5.61 5.61 Total: -1.00 -36.02 372.56 -8.15 -44.17 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: -7.26 Total: 2.42 kcal Atomic # 6 Polarization: 5.10 SS G_CDS: 0.86 Total: 5.96 kcal Atomic # 7 Polarization: -42.83 SS G_CDS: 0.10 Total: -42.73 kcal Atomic # 8 Polarization: -26.15 SS G_CDS: -0.75 Total: -26.89 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.72 Total: 16.84 kcal Atomic # 16 Polarization: -3.39 SS G_CDS: -1.99 Total: -5.38 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -36.02 -8.15 -44.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001062018475.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.316 kcal (2) G-P(sol) polarization free energy of solvation -36.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds