Wall clock time and date at job start Tue Mar 31 2020 04:50:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42901 * 114.00314 * 2 1 4 4 H 1.09000 * 109.47054 * 30.00425 * 3 2 1 5 5 C 1.53001 * 109.47232 * 270.00319 * 3 2 1 6 6 C 1.50695 * 109.47048 * 150.00389 * 3 2 1 7 7 O 1.21275 * 120.00383 * 5.00029 * 6 3 2 8 8 N 1.34785 * 119.99817 * 185.00135 * 6 3 2 9 9 C 1.46501 * 119.99909 * 174.97490 * 8 6 3 10 10 C 1.53000 * 112.84655 * 294.01282 * 9 8 6 11 11 N 1.46501 * 109.47180 * 311.51772 * 10 9 8 12 12 C 1.34773 * 119.99899 * 174.96610 * 11 10 9 13 13 O 1.21286 * 119.99955 * 359.97438 * 12 11 10 14 14 C 1.50703 * 120.00014 * 180.02562 * 12 11 10 15 15 S 1.80994 * 109.47097 * 179.97438 * 14 12 11 16 16 C 1.76206 * 99.99789 * 179.97438 * 15 14 12 17 17 H 1.07997 * 120.00206 * 0.02562 * 16 15 14 18 18 C 1.38805 * 119.99532 * 179.97438 * 16 15 14 19 19 N 1.31621 * 120.00357 * 0.02562 * 18 16 15 20 20 Si 1.86806 * 119.99388 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47057 * 90.00499 * 20 18 16 22 22 H 1.48504 * 109.46870 * 210.00313 * 20 18 16 23 23 H 1.48499 * 109.47263 * 330.00138 * 20 18 16 24 24 C 1.53776 * 113.61161 * 162.70639 * 9 8 6 25 25 C 1.53784 * 87.08193 * 270.88240 * 24 9 8 26 26 C 1.53780 * 113.61379 * 65.20706 * 9 8 6 27 27 H 1.08996 * 109.47735 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.46850 * 299.99802 * 1 2 3 29 29 H 1.08995 * 109.47363 * 59.99643 * 1 2 3 30 30 H 1.08993 * 109.47425 * 179.97438 * 5 3 2 31 31 H 1.09000 * 109.47187 * 300.00023 * 5 3 2 32 32 H 1.09002 * 109.46891 * 59.99556 * 5 3 2 33 33 H 0.97003 * 119.99880 * 354.96885 * 8 6 3 34 34 H 1.08999 * 109.47145 * 71.52091 * 10 9 8 35 35 H 1.09007 * 109.46491 * 191.52186 * 10 9 8 36 36 H 0.97005 * 119.99756 * 354.95800 * 11 10 9 37 37 H 1.09003 * 109.46596 * 299.99916 * 14 12 11 38 38 H 1.08999 * 109.47313 * 59.99390 * 14 12 11 39 39 H 0.97005 * 120.00092 * 179.97438 * 19 18 16 40 40 H 1.09001 * 113.61792 * 25.43341 * 24 9 8 41 41 H 1.09004 * 113.61762 * 156.33596 * 24 9 8 42 42 H 1.09001 * 113.61313 * 220.01978 * 25 24 9 43 43 H 1.09001 * 113.61245 * 89.11822 * 25 24 9 44 44 H 1.09002 * 113.61499 * 203.66158 * 26 9 8 45 45 H 1.09000 * 113.61668 * 334.57272 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3451 1.9994 0.5139 5 6 2.2176 1.7714 -1.4425 6 6 3.3386 1.2638 0.7103 7 8 3.7897 0.2044 1.0912 8 7 4.0255 2.4039 0.9223 9 6 5.2617 2.3790 1.7081 10 6 5.0261 2.0120 3.1746 11 7 3.9271 2.8195 3.7096 12 6 3.4731 2.5965 4.9589 13 8 3.9741 1.7270 5.6400 14 6 2.3422 3.4269 5.5091 15 16 1.9646 2.8899 7.1958 16 6 0.6481 3.9958 7.5813 17 1 0.3192 4.7197 6.8504 18 6 0.0329 3.9358 8.8242 19 7 0.4333 3.0533 9.7148 20 14 -1.3633 5.1078 9.2327 21 1 -2.6566 4.4930 8.8393 22 1 -1.3688 5.3814 10.6923 23 1 -1.1743 6.3804 8.4912 24 6 6.1384 3.6278 1.5168 25 6 6.8044 2.8845 0.3467 26 6 6.3958 1.5778 1.0471 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 2.6606 2.7673 -1.4425 31 1 2.8828 1.0775 -1.9564 32 1 1.2568 1.8014 -1.9563 33 1 3.7014 3.2409 0.5545 34 1 4.7696 0.9551 3.2480 35 1 5.9325 2.2066 3.7479 36 1 3.5262 3.5148 3.1648 37 1 2.6338 4.4771 5.5183 38 1 1.4599 3.3003 4.8817 39 1 0.0036 3.0117 10.5836 40 1 5.5787 4.5116 1.2107 41 1 6.8122 3.8204 2.3517 42 1 7.8830 3.0323 0.2929 43 1 6.3064 3.0413 -0.6101 44 1 7.1398 1.2100 1.7537 45 1 6.0437 0.8068 0.3618 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001062579021.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:50:57 Heat of formation + Delta-G solvation = -96.817770 kcal Electronic energy + Delta-G solvation = -26517.838790 eV Core-core repulsion = 22662.679541 eV Total energy + Delta-G solvation = -3855.159248 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.05995 -39.24032 -38.62251 -37.37622 -34.23260 -33.69359 -32.42674 -31.55831 -29.89985 -27.32505 -27.08389 -26.12979 -25.47195 -24.66853 -22.74915 -21.01689 -20.23444 -19.50733 -17.93176 -17.79760 -17.12104 -16.48951 -16.24707 -15.89519 -15.54416 -15.19073 -15.12852 -14.91426 -14.80473 -14.41680 -13.94238 -13.84552 -13.61424 -13.24238 -13.09109 -12.87852 -12.81838 -12.66029 -12.59651 -12.19267 -12.05181 -11.68985 -11.51600 -11.26650 -11.16558 -11.06623 -11.02400 -10.76391 -10.67753 -10.26034 -9.81983 -9.66964 -9.43843 -9.23459 -9.06801 -8.80337 -8.21839 -6.48934 -6.21131 -3.91591 2.38849 2.48028 3.06044 3.15777 3.21786 3.27739 3.31943 3.61124 3.72213 4.04896 4.20527 4.23007 4.35727 4.44883 4.48818 4.56767 4.63979 4.97121 5.02989 5.06958 5.12862 5.13764 5.20186 5.28419 5.30985 5.40656 5.45563 5.50272 5.53713 5.63036 5.63534 5.69234 5.77025 5.87448 5.90122 5.99559 6.12597 6.30436 6.65529 6.71394 7.18955 7.59234 7.74932 8.00289 8.35127 8.67091 9.23802 10.86264 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.012329 B = 0.003004 C = 0.002616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2270.500288 B = 9318.868230 C =10700.363572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.359 6.359 3 C 0.068 3.932 4 H 0.088 0.912 5 C -0.169 4.169 6 C 0.519 3.481 7 O -0.502 6.502 8 N -0.711 5.711 9 C 0.142 3.858 10 C 0.123 3.877 11 N -0.733 5.733 12 C 0.530 3.470 13 O -0.515 6.515 14 C -0.152 4.152 15 S -0.059 6.059 16 C -0.536 4.536 17 H 0.072 0.928 18 C 0.074 3.926 19 N -0.867 5.867 20 Si 0.918 3.082 21 H -0.277 1.277 22 H -0.282 1.282 23 H -0.272 1.272 24 C -0.135 4.135 25 C -0.140 4.140 26 C -0.133 4.133 27 H 0.092 0.908 28 H 0.047 0.953 29 H 0.042 0.958 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.400 0.600 34 H 0.080 0.920 35 H 0.074 0.926 36 H 0.393 0.607 37 H 0.088 0.912 38 H 0.086 0.914 39 H 0.268 0.732 40 H 0.074 0.926 41 H 0.100 0.900 42 H 0.072 0.928 43 H 0.079 0.921 44 H 0.093 0.907 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.894 3.060 -26.314 27.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.276 6.276 3 C 0.007 3.993 4 H 0.106 0.894 5 C -0.227 4.227 6 C 0.304 3.696 7 O -0.374 6.374 8 N -0.367 5.367 9 C 0.055 3.945 10 C -0.002 4.002 11 N -0.387 5.387 12 C 0.316 3.684 13 O -0.389 6.389 14 C -0.302 4.302 15 S 0.168 5.832 16 C -0.684 4.684 17 H 0.090 0.910 18 C -0.136 4.136 19 N -0.502 5.502 20 Si 0.745 3.255 21 H -0.203 1.203 22 H -0.207 1.207 23 H -0.197 1.197 24 C -0.172 4.172 25 C -0.177 4.177 26 C -0.171 4.171 27 H 0.110 0.890 28 H 0.066 0.934 29 H 0.061 0.939 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.235 0.765 34 H 0.099 0.901 35 H 0.092 0.908 36 H 0.226 0.774 37 H 0.107 0.893 38 H 0.105 0.895 39 H 0.078 0.922 40 H 0.093 0.907 41 H 0.118 0.882 42 H 0.091 0.909 43 H 0.098 0.902 44 H 0.112 0.888 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 8.139 0.535 -24.685 25.998 hybrid contribution -2.176 2.765 -0.966 3.649 sum 5.963 3.301 -25.651 26.541 Atomic orbital electron populations 1.22912 0.80283 1.03503 1.00174 1.88051 1.19924 1.24778 1.94891 1.21933 0.93510 0.87369 0.96534 0.89419 1.22229 1.03529 1.01747 0.95199 1.20353 0.85876 0.84004 0.79396 1.90749 1.68431 1.29511 1.48724 1.45567 1.25145 1.10355 1.55592 1.21584 0.84183 0.98580 0.90170 1.21569 0.90662 0.97235 0.90742 1.45826 1.37859 1.39167 1.15877 1.20296 0.83592 0.83841 0.80719 1.90712 1.58010 1.32368 1.57838 1.23512 0.98393 1.02217 1.06106 1.85451 1.44942 1.48538 1.04288 1.22865 1.20698 1.21818 1.03061 0.91004 1.24992 0.97382 0.96027 0.95179 1.70017 1.40516 1.33532 1.06139 0.86175 0.81233 0.80389 0.77727 1.20290 1.20737 1.19721 1.23282 0.98321 0.95842 0.99799 1.22851 1.01012 0.96308 0.97539 1.23174 0.96729 0.97211 1.00026 0.88988 0.93419 0.93899 0.91069 0.91076 0.91137 0.76472 0.90139 0.90811 0.77373 0.89347 0.89543 0.92172 0.90719 0.88152 0.90922 0.90203 0.88820 0.90176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.82 101.05 1.09 1.33 16 2 O -0.36 -4.30 9.89 -55.09 -0.54 -4.85 16 3 C 0.07 0.62 3.13 -27.88 -0.09 0.53 16 4 H 0.09 0.64 7.79 -51.93 -0.40 0.23 16 5 C -0.17 -1.00 9.47 37.16 0.35 -0.65 16 6 C 0.52 5.88 6.74 -10.98 -0.07 5.80 16 7 O -0.50 -8.13 14.51 -14.30 -0.21 -8.34 16 8 N -0.71 -5.62 4.50 -46.86 -0.21 -5.83 16 9 C 0.14 1.27 0.63 -131.01 -0.08 1.18 16 10 C 0.12 1.60 4.93 -4.04 -0.02 1.58 16 11 N -0.73 -10.15 5.38 -60.29 -0.32 -10.48 16 12 C 0.53 10.28 7.85 -10.99 -0.09 10.19 16 13 O -0.52 -12.33 15.86 5.55 0.09 -12.24 16 14 C -0.15 -3.10 6.16 36.01 0.22 -2.88 16 15 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 16 C -0.54 -15.34 9.50 30.94 0.29 -15.04 16 17 H 0.07 1.93 7.80 -52.49 -0.41 1.53 16 18 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 19 N -0.87 -26.32 13.22 55.49 0.73 -25.59 16 20 Si 0.92 21.38 29.55 -169.99 -5.02 16.35 16 21 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 22 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 23 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16 24 C -0.13 -0.84 7.37 -25.92 -0.19 -1.03 16 25 C -0.14 -0.85 7.99 -25.92 -0.21 -1.06 16 26 C -0.13 -1.16 6.95 -25.92 -0.18 -1.34 16 27 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.05 0.40 8.09 -51.93 -0.42 -0.02 16 29 H 0.04 0.27 7.87 -51.93 -0.41 -0.14 16 30 H 0.07 0.25 7.77 -51.93 -0.40 -0.15 16 31 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.07 0.35 7.87 -51.93 -0.41 -0.06 16 33 H 0.40 1.82 8.28 -40.82 -0.34 1.48 16 34 H 0.08 1.35 7.34 -51.93 -0.38 0.97 16 35 H 0.07 0.95 7.94 -51.92 -0.41 0.53 16 36 H 0.39 4.15 8.11 -40.82 -0.33 3.82 16 37 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 38 H 0.09 1.63 8.14 -51.92 -0.42 1.21 16 39 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 40 H 0.07 0.36 8.09 -51.93 -0.42 -0.06 16 41 H 0.10 0.65 7.96 -51.93 -0.41 0.23 16 42 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 43 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.09 0.80 8.10 -51.93 -0.42 0.38 16 45 H 0.08 0.85 7.19 -51.93 -0.37 0.48 16 LS Contribution 389.19 15.07 5.87 5.87 Total: -1.00 -38.66 389.19 -8.12 -46.77 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: -7.22 Total: 1.54 kcal Atomic # 6 Polarization: -0.31 SS G_CDS: 0.94 Total: 0.62 kcal Atomic # 7 Polarization: -42.09 SS G_CDS: 0.20 Total: -41.89 kcal Atomic # 8 Polarization: -24.76 SS G_CDS: -0.66 Total: -25.43 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.35 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -38.66 -8.12 -46.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001062579021.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.046 kcal (2) G-P(sol) polarization free energy of solvation -38.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds