Wall clock time and date at job start Tue Mar 31 2020 05:45:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42897 * 114.00208 * 2 1 4 4 C 1.50695 * 109.46997 * 180.02562 * 3 2 1 5 5 O 1.21277 * 120.00506 * 359.97438 * 4 3 2 6 6 N 1.34784 * 119.99801 * 179.97438 * 4 3 2 7 7 C 1.46498 * 119.99897 * 179.97438 * 6 4 3 8 8 H 1.09005 * 109.50608 * 34.94337 * 7 6 4 9 9 C 1.52572 * 109.49162 * 155.00453 * 7 6 4 10 10 C 1.47090 * 114.32442 * 204.97897 * 9 7 6 11 11 C 1.54859 * 110.32716 * 297.19500 * 10 9 7 12 12 N 1.44582 * 109.59744 * 71.26572 * 11 10 9 13 13 C 1.34775 * 118.64042 * 89.25793 * 12 11 10 14 14 O 1.21284 * 120.00295 * 180.02562 * 13 12 11 15 15 C 1.50708 * 119.99957 * 359.97438 * 13 12 11 16 16 S 1.80998 * 109.47052 * 180.02562 * 15 13 12 17 17 C 1.76199 * 100.00013 * 180.02562 * 16 15 13 18 18 H 1.07991 * 119.99794 * 0.02562 * 17 16 15 19 19 C 1.38798 * 119.99771 * 180.02562 * 17 16 15 20 20 N 1.31633 * 120.00311 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99653 * 180.02562 * 19 17 16 22 22 H 1.48511 * 109.47049 * 269.99633 * 21 19 17 23 23 H 1.48494 * 109.47357 * 29.99707 * 21 19 17 24 24 H 1.48502 * 109.47120 * 150.00426 * 21 19 17 25 25 C 1.47595 * 122.71481 * 269.53084 * 12 11 10 26 26 C 1.50879 * 109.49160 * 274.88819 * 7 6 4 27 27 H 1.09000 * 109.47018 * 299.99852 * 1 2 3 28 28 H 1.09000 * 109.46978 * 59.99805 * 1 2 3 29 29 H 1.08995 * 109.47391 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47410 * 59.99830 * 3 2 1 31 31 H 1.09004 * 109.47206 * 300.00182 * 3 2 1 32 32 H 0.96992 * 119.99873 * 0.02562 * 6 4 3 33 33 H 1.08995 * 108.50893 * 83.72322 * 9 7 6 34 34 H 1.09005 * 108.50413 * 326.23094 * 9 7 6 35 35 H 1.09001 * 109.32296 * 176.93086 * 10 9 7 36 36 H 1.09001 * 109.33046 * 57.46084 * 10 9 7 37 37 H 1.09008 * 109.44788 * 311.23351 * 11 10 9 38 38 H 1.08999 * 109.45168 * 191.30768 * 11 10 9 39 39 H 1.09005 * 109.46512 * 60.00633 * 15 13 12 40 40 H 1.08991 * 109.47135 * 300.00153 * 15 13 12 41 41 H 0.97001 * 119.99662 * 359.97438 * 20 19 17 42 42 H 1.09001 * 108.94797 * 162.55609 * 25 12 11 43 43 H 1.08998 * 108.95582 * 281.19272 * 25 12 11 44 44 H 1.09000 * 109.36761 * 268.33902 * 26 7 6 45 45 H 1.09000 * 109.36980 * 28.08528 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5125 1.1863 -0.0006 5 8 4.0341 0.0915 -0.0006 6 7 4.2765 2.2967 -0.0013 7 6 5.7369 2.1810 -0.0013 8 1 6.0332 1.3123 -0.5894 9 6 6.3473 3.4400 -0.6098 10 6 7.6835 3.2445 -1.1928 11 6 8.6921 2.8210 -0.0966 12 7 8.4111 1.4663 0.3235 13 6 9.0068 0.4502 -0.3315 14 8 8.7884 -0.6959 -0.0001 15 6 9.9434 0.7379 -1.4766 16 16 10.5764 -0.8207 -2.1446 17 6 11.6132 -0.2045 -3.4290 18 1 11.6962 0.8598 -3.5921 19 6 12.3233 -1.0870 -4.2312 20 7 12.2217 -2.3843 -4.0327 21 14 13.4230 -0.4336 -5.5924 22 1 12.6386 -0.3132 -6.8477 23 1 13.9482 0.9008 -5.2070 24 1 14.5565 -1.3693 -5.8051 25 6 7.4944 1.1501 1.4362 26 6 6.2293 2.0211 1.4159 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.6887 1.8464 0.8899 31 1 1.6886 1.8464 -0.8900 32 1 3.8594 3.1724 -0.0009 33 1 6.4166 4.2012 0.1672 34 1 5.6795 3.8061 -1.3896 35 1 8.0174 4.1761 -1.6497 36 1 7.6339 2.4686 -1.9567 37 1 8.6024 3.4919 0.7578 38 1 9.7052 2.8747 -0.4952 39 1 10.7755 1.3459 -1.1214 40 1 9.4073 1.2765 -2.2579 41 1 11.6509 -2.7235 -3.3256 42 1 7.2033 0.1020 1.3679 43 1 8.0151 1.3104 2.3803 44 1 6.4563 3.0024 1.8326 45 1 5.4546 1.5440 2.0161 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001065737638.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:22 Heat of formation + Delta-G solvation = -117.252745 kcal Electronic energy + Delta-G solvation = -26509.038683 eV Core-core repulsion = 22652.993307 eV Total energy + Delta-G solvation = -3856.045375 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.66977 -39.67021 -38.05579 -37.21946 -35.05247 -33.13067 -32.48558 -32.38079 -29.59902 -28.75223 -26.81220 -26.17016 -24.98482 -24.66599 -22.11128 -20.99324 -20.81669 -18.91917 -18.14313 -17.62572 -17.26285 -16.83528 -16.67319 -16.37445 -15.96535 -15.26836 -14.95185 -14.77621 -14.56094 -14.29412 -14.12722 -13.83193 -13.56971 -13.38985 -13.26598 -12.95120 -12.67098 -12.50464 -12.35639 -12.00405 -11.87838 -11.84931 -11.74208 -11.47420 -11.16364 -10.96712 -10.88926 -10.86845 -10.21186 -10.17200 -9.96918 -9.51934 -9.42841 -9.34256 -8.97615 -8.50932 -8.15965 -6.62235 -6.58358 -3.95699 2.38160 2.48579 2.87607 3.03302 3.34990 3.40907 3.49388 3.58435 3.68644 4.26680 4.28731 4.39531 4.48202 4.62991 4.71271 4.76279 4.81138 4.89754 4.90358 4.95690 4.99144 5.14938 5.23911 5.25931 5.28466 5.32175 5.40544 5.49787 5.54418 5.69155 5.72339 5.80369 5.86998 5.89122 5.97339 6.05546 6.13243 6.22701 6.57467 6.70375 7.20122 7.52144 7.95408 7.99958 8.53808 8.54448 9.31363 10.85716 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.015345 B = 0.002685 C = 0.002525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1824.266975 B =10426.219126 C =11084.945935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.365 6.365 3 C 0.044 3.956 4 C 0.507 3.493 5 O -0.504 6.504 6 N -0.729 5.729 7 C 0.147 3.853 8 H 0.096 0.904 9 C -0.120 4.120 10 C -0.141 4.141 11 C 0.110 3.890 12 N -0.615 5.615 13 C 0.526 3.474 14 O -0.512 6.512 15 C -0.127 4.127 16 S -0.119 6.119 17 C -0.606 4.606 18 H 0.065 0.935 19 C 0.034 3.966 20 N -0.885 5.885 21 Si 1.087 2.913 22 H -0.284 1.284 23 H -0.287 1.287 24 H -0.280 1.280 25 C 0.117 3.883 26 C -0.137 4.137 27 H 0.043 0.957 28 H 0.043 0.957 29 H 0.092 0.908 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.397 0.603 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.082 0.918 36 H 0.072 0.928 37 H 0.077 0.923 38 H 0.085 0.915 39 H 0.091 0.909 40 H 0.092 0.908 41 H 0.279 0.721 42 H 0.094 0.906 43 H 0.062 0.938 44 H 0.068 0.932 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.918 19.136 10.694 30.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.283 6.283 3 C -0.036 4.036 4 C 0.292 3.708 5 O -0.377 6.377 6 N -0.383 5.383 7 C 0.043 3.957 8 H 0.114 0.886 9 C -0.158 4.158 10 C -0.180 4.180 11 C -0.014 4.014 12 N -0.351 5.351 13 C 0.314 3.686 14 O -0.386 6.386 15 C -0.278 4.278 16 S 0.108 5.892 17 C -0.754 4.754 18 H 0.084 0.916 19 C -0.176 4.176 20 N -0.519 5.519 21 Si 0.913 3.087 22 H -0.211 1.211 23 H -0.213 1.213 24 H -0.205 1.205 25 C -0.006 4.006 26 C -0.176 4.176 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.110 0.890 30 H 0.097 0.903 31 H 0.097 0.903 32 H 0.231 0.769 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.100 0.900 36 H 0.091 0.909 37 H 0.095 0.905 38 H 0.103 0.897 39 H 0.109 0.891 40 H 0.110 0.890 41 H 0.091 0.909 42 H 0.112 0.888 43 H 0.080 0.920 44 H 0.087 0.913 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -19.740 15.953 10.012 27.284 hybrid contribution -1.284 2.871 0.741 3.231 sum -21.024 18.824 10.753 30.199 Atomic orbital electron populations 1.22850 0.80305 1.03500 1.00015 1.88058 1.19824 1.25004 1.95379 1.22231 0.91733 0.87192 1.02446 1.20298 0.88654 0.84830 0.77027 1.90827 1.74350 1.26279 1.46250 1.46034 1.06918 1.08478 1.76838 1.20490 0.78114 1.00147 0.96910 0.88619 1.20679 0.97536 0.96672 1.00890 1.21273 0.94779 1.02927 0.99044 1.21587 0.99228 0.83169 0.97447 1.47699 1.46343 1.06255 1.34765 1.20408 0.80532 0.84848 0.82819 1.90707 1.61369 1.20681 1.65817 1.23379 1.00433 1.05713 0.98232 1.84892 1.57833 1.05284 1.41209 1.23709 1.33942 0.97095 1.20652 0.91644 1.26048 0.97543 0.93932 1.00100 1.70759 1.36585 1.12780 1.31781 0.83293 0.75864 0.74924 0.74597 1.21092 1.21326 1.20530 1.21606 0.89035 1.01363 0.88618 1.22113 0.97763 1.00671 0.97071 0.93840 0.93790 0.88955 0.90345 0.90314 0.76887 0.91515 0.91472 0.89980 0.90928 0.90466 0.89706 0.89063 0.89024 0.90891 0.88766 0.91973 0.91334 0.90270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 101.05 1.11 1.31 16 2 O -0.37 -4.08 10.24 -55.14 -0.56 -4.65 16 3 C 0.04 0.35 6.42 36.00 0.23 0.58 16 4 C 0.51 5.88 7.73 -10.98 -0.08 5.79 16 5 O -0.50 -8.94 16.16 -14.35 -0.23 -9.17 16 6 N -0.73 -6.07 4.93 -55.06 -0.27 -6.34 16 7 C 0.15 1.52 2.06 -69.22 -0.14 1.38 16 8 H 0.10 1.46 6.91 -51.93 -0.36 1.10 16 9 C -0.12 -0.91 4.69 -29.79 -0.14 -1.05 16 10 C -0.14 -1.30 5.62 -28.59 -0.16 -1.46 16 11 C 0.11 1.14 5.17 -4.09 -0.02 1.12 16 12 N -0.61 -8.79 2.25 -172.75 -0.39 -9.18 16 13 C 0.53 10.38 7.64 -10.98 -0.08 10.29 16 14 O -0.51 -12.34 15.14 5.55 0.08 -12.26 16 15 C -0.13 -2.64 4.65 36.01 0.17 -2.47 16 16 S -0.12 -3.29 19.60 -107.50 -2.11 -5.40 16 17 C -0.61 -17.71 9.50 30.94 0.29 -17.41 16 18 H 0.07 1.82 7.80 -52.49 -0.41 1.41 16 19 C 0.03 1.01 5.49 -17.43 -0.10 0.92 16 20 N -0.88 -28.08 13.67 55.49 0.76 -27.32 16 21 Si 1.09 25.31 29.92 -169.99 -5.09 20.22 16 22 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 23 H -0.29 -6.25 7.11 56.52 0.40 -5.85 16 24 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 25 C 0.12 1.52 6.07 -3.13 -0.02 1.50 16 26 C -0.14 -1.34 5.38 -27.48 -0.15 -1.49 16 27 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 28 H 0.04 0.22 8.14 -51.93 -0.42 -0.21 16 29 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.40 1.74 8.60 -40.82 -0.35 1.39 16 33 H 0.07 0.38 7.36 -51.93 -0.38 -0.01 16 34 H 0.07 0.45 8.04 -51.93 -0.42 0.03 16 35 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.07 0.87 7.27 -51.93 -0.38 0.50 16 37 H 0.08 0.60 8.07 -51.92 -0.42 0.19 16 38 H 0.08 0.91 6.26 -51.93 -0.32 0.59 16 39 H 0.09 1.75 7.30 -51.91 -0.38 1.37 16 40 H 0.09 1.77 7.08 -51.92 -0.37 1.41 16 41 H 0.28 9.07 7.12 -40.82 -0.29 8.77 16 42 H 0.09 1.56 6.96 -51.93 -0.36 1.20 16 43 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.07 0.50 7.32 -51.93 -0.38 0.12 16 45 H 0.08 0.83 7.85 -51.93 -0.41 0.42 16 LS Contribution 375.58 15.07 5.66 5.66 Total: -1.00 -40.47 375.58 -8.22 -48.69 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: -6.98 Total: 0.75 kcal Atomic # 6 Polarization: -1.91 SS G_CDS: 0.91 Total: -1.00 kcal Atomic # 7 Polarization: -42.94 SS G_CDS: 0.10 Total: -42.84 kcal Atomic # 8 Polarization: -25.37 SS G_CDS: -0.71 Total: -26.08 kcal Atomic # 14 Polarization: 25.31 SS G_CDS: -5.09 Total: 20.22 kcal Atomic # 16 Polarization: -3.29 SS G_CDS: -2.11 Total: -5.40 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -40.47 -8.22 -48.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001065737638.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.562 kcal (2) G-P(sol) polarization free energy of solvation -40.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds