Wall clock time and date at job start Tue Mar 31 2020 05:45:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42903 * 114.00208 * 2 1 4 4 C 1.50696 * 109.47673 * 180.02562 * 3 2 1 5 5 O 1.21279 * 119.99578 * 359.97438 * 4 3 2 6 6 N 1.34777 * 120.00363 * 180.02562 * 4 3 2 7 7 C 1.44578 * 118.64147 * 359.97438 * 6 4 3 8 8 C 1.54867 * 109.60611 * 270.72904 * 7 6 4 9 9 C 1.47096 * 110.31769 * 288.73940 * 8 7 6 10 10 C 1.52565 * 114.32743 * 62.80063 * 9 8 7 11 11 H 1.09005 * 109.49063 * 34.94789 * 10 9 8 12 12 N 1.46503 * 109.49159 * 154.99071 * 10 9 8 13 13 C 1.34772 * 120.00003 * 205.00222 * 12 10 9 14 14 O 1.21278 * 120.00259 * 359.97438 * 13 12 10 15 15 C 1.50696 * 119.99744 * 180.02562 * 13 12 10 16 16 S 1.81001 * 109.47232 * 179.97438 * 15 13 12 17 17 C 1.76203 * 100.00280 * 179.97438 * 16 15 13 18 18 H 1.07997 * 119.99611 * 0.02562 * 17 16 15 19 19 C 1.38794 * 119.99804 * 179.97438 * 17 16 15 20 20 N 1.31630 * 119.99904 * 179.97438 * 19 17 16 21 21 Si 1.86800 * 120.00280 * 0.02562 * 19 17 16 22 22 H 1.48503 * 109.47005 * 90.00143 * 21 19 17 23 23 H 1.48505 * 109.47029 * 209.99567 * 21 19 17 24 24 H 1.48494 * 109.47259 * 329.99925 * 21 19 17 25 25 C 1.50884 * 109.35554 * 274.98236 * 10 9 8 26 26 C 1.47601 * 118.64184 * 179.97438 * 6 4 3 27 27 H 1.09001 * 109.47324 * 180.02562 * 1 2 3 28 28 H 1.09008 * 109.46675 * 299.99616 * 1 2 3 29 29 H 1.09003 * 109.47471 * 59.99258 * 1 2 3 30 30 H 1.09003 * 109.46870 * 59.99899 * 3 2 1 31 31 H 1.09004 * 109.47198 * 300.00840 * 3 2 1 32 32 H 1.09003 * 109.44609 * 150.68968 * 7 6 4 33 33 H 1.08997 * 109.44777 * 30.76961 * 7 6 4 34 34 H 1.09003 * 109.32636 * 168.47903 * 8 7 6 35 35 H 1.09000 * 109.32612 * 48.99705 * 8 7 6 36 36 H 1.09003 * 108.51039 * 184.05365 * 9 8 7 37 37 H 1.09002 * 108.51166 * 301.70182 * 9 8 7 38 38 H 0.97002 * 119.99521 * 25.00155 * 12 10 9 39 39 H 1.09005 * 109.47063 * 299.99005 * 15 13 12 40 40 H 1.09003 * 109.47974 * 59.99389 * 15 13 12 41 41 H 0.97001 * 120.00353 * 179.97438 * 20 19 17 42 42 H 1.09001 * 109.36367 * 212.08135 * 25 10 9 43 43 H 1.08997 * 109.36350 * 331.82501 * 25 10 9 44 44 H 1.08997 * 108.95368 * 17.18033 * 26 6 4 45 45 H 1.08997 * 108.94482 * 258.54638 * 26 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1866 -0.0006 5 8 4.0341 0.0917 -0.0006 6 7 4.2765 2.2969 -0.0002 7 6 3.6239 3.5871 0.0003 8 6 3.3728 4.0429 -1.4583 9 6 4.6423 4.4095 -2.1046 10 6 5.6366 3.2596 -2.2342 11 1 5.0964 2.3305 -2.4164 12 7 6.5461 3.5235 -3.3520 13 6 7.1544 2.4990 -3.9821 14 8 6.9492 1.3588 -3.6234 15 6 8.0903 2.7705 -5.1315 16 16 8.7431 1.2041 -5.7610 17 6 9.7748 1.8017 -7.0584 18 1 9.8453 2.8627 -7.2468 19 6 10.4975 0.9088 -7.8374 20 7 11.2678 1.3552 -8.8069 21 14 10.3760 -0.9264 -7.5109 22 1 9.2706 -1.5008 -8.3192 23 1 11.6551 -1.5815 -7.8853 24 1 10.1059 -1.1558 -6.0688 25 6 6.4302 3.1384 -0.9566 26 6 5.7447 2.1455 -0.0003 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 1.6886 1.8464 0.8900 31 1 1.6885 1.8465 -0.8899 32 1 4.2599 4.3152 0.5037 33 1 2.6721 3.5121 0.5260 34 1 2.7063 4.9055 -1.4570 35 1 2.9060 3.2303 -2.0150 36 1 4.4250 4.7932 -3.1015 37 1 5.1097 5.2044 -1.5234 38 1 6.7105 4.4355 -3.6386 39 1 7.5500 3.2849 -5.9263 40 1 8.9148 3.3959 -4.7890 41 1 11.7733 0.7313 -9.3511 42 1 7.4345 2.7832 -1.1874 43 1 6.4935 4.1148 -0.4765 44 1 5.9958 1.1296 -0.3052 45 1 6.1177 2.3125 1.0102 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001065877346.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:04 Heat of formation + Delta-G solvation = -112.386529 kcal Electronic energy + Delta-G solvation = -26437.151989 eV Core-core repulsion = 22581.317628 eV Total energy + Delta-G solvation = -3855.834360 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.87583 -39.48773 -38.11911 -37.32338 -35.10348 -33.29006 -32.42972 -32.24362 -29.64125 -28.77149 -26.91119 -26.29402 -25.61819 -24.98099 -22.33878 -20.98471 -20.45966 -19.26197 -17.84825 -17.78346 -17.19884 -16.73186 -16.42460 -16.32682 -15.98041 -15.30371 -15.05201 -14.91519 -14.87005 -14.50816 -14.23623 -13.89728 -13.60260 -13.56505 -13.33183 -12.98614 -12.78412 -12.73362 -12.47776 -12.09859 -11.97024 -11.90726 -11.69484 -11.29576 -11.24406 -11.10623 -10.98657 -10.91726 -10.57171 -10.17030 -9.90793 -9.83561 -9.48274 -9.14867 -8.98558 -8.83833 -8.47624 -6.90017 -6.27692 -3.99234 2.32931 2.43824 2.77101 2.98937 3.30119 3.36072 3.53604 3.54017 3.65902 4.14773 4.28299 4.33830 4.35187 4.42784 4.63308 4.71517 4.73426 4.77787 4.86271 4.91749 4.94876 4.98957 5.07118 5.11530 5.16150 5.25614 5.29807 5.33123 5.44489 5.48111 5.57242 5.75063 5.76517 5.79231 5.91743 6.01229 6.05137 6.25957 6.57393 6.60199 7.05889 7.62196 7.94275 7.95373 8.42408 8.51921 9.18736 10.81470 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.017196 B = 0.002627 C = 0.002425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1627.882537 B =10656.070147 C =11545.280872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.366 6.366 3 C 0.044 3.956 4 C 0.508 3.492 5 O -0.509 6.509 6 N -0.607 5.607 7 C 0.105 3.895 8 C -0.137 4.137 9 C -0.127 4.127 10 C 0.150 3.850 11 H 0.089 0.911 12 N -0.735 5.735 13 C 0.529 3.471 14 O -0.513 6.513 15 C -0.124 4.124 16 S -0.141 6.141 17 C -0.521 4.521 18 H 0.088 0.912 19 C 0.095 3.905 20 N -0.881 5.881 21 Si 0.856 3.144 22 H -0.267 1.267 23 H -0.274 1.274 24 H -0.235 1.235 25 C -0.140 4.140 26 C 0.117 3.883 27 H 0.092 0.908 28 H 0.043 0.957 29 H 0.044 0.956 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.085 0.915 33 H 0.079 0.921 34 H 0.082 0.918 35 H 0.068 0.932 36 H 0.071 0.929 37 H 0.068 0.932 38 H 0.398 0.602 39 H 0.096 0.904 40 H 0.097 0.903 41 H 0.271 0.729 42 H 0.086 0.914 43 H 0.068 0.932 44 H 0.097 0.903 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.418 11.113 20.870 31.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.284 6.284 3 C -0.036 4.036 4 C 0.295 3.705 5 O -0.382 6.382 6 N -0.343 5.343 7 C -0.019 4.019 8 C -0.176 4.176 9 C -0.165 4.165 10 C 0.045 3.955 11 H 0.108 0.892 12 N -0.389 5.389 13 C 0.314 3.686 14 O -0.387 6.387 15 C -0.275 4.275 16 S 0.086 5.914 17 C -0.669 4.669 18 H 0.106 0.894 19 C -0.113 4.113 20 N -0.517 5.517 21 Si 0.681 3.319 22 H -0.192 1.192 23 H -0.199 1.199 24 H -0.159 1.159 25 C -0.180 4.180 26 C -0.005 4.005 27 H 0.110 0.890 28 H 0.061 0.939 29 H 0.063 0.937 30 H 0.096 0.904 31 H 0.098 0.902 32 H 0.103 0.897 33 H 0.097 0.903 34 H 0.101 0.899 35 H 0.086 0.914 36 H 0.089 0.911 37 H 0.086 0.914 38 H 0.232 0.768 39 H 0.114 0.886 40 H 0.115 0.885 41 H 0.080 0.920 42 H 0.105 0.895 43 H 0.086 0.914 44 H 0.115 0.885 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -21.219 8.389 21.321 31.228 hybrid contribution 0.234 1.522 -0.781 1.726 sum -20.984 9.911 20.540 30.991 Atomic orbital electron populations 1.22847 0.80339 1.03455 1.00032 1.88045 1.19799 1.25181 1.95367 1.22351 0.91853 0.87009 1.02350 1.20342 0.88747 0.84554 0.76900 1.90768 1.74310 1.26254 1.46908 1.47673 1.06732 1.05658 1.74249 1.21698 0.98191 0.85272 0.96772 1.21276 0.97796 1.02292 0.96241 1.20713 0.95740 0.98010 1.02015 1.20318 0.90039 0.99544 0.85618 0.89248 1.46125 1.48055 1.09699 1.35050 1.20307 0.80305 0.84946 0.82991 1.90736 1.61531 1.21249 1.65152 1.23283 1.00691 1.05142 0.98351 1.84855 1.57651 1.06725 1.42218 1.22317 1.30128 0.97398 1.17045 0.89422 1.24712 0.93575 0.99350 0.93682 1.69938 1.27332 1.35630 1.18845 0.86738 0.78455 0.84788 0.81910 1.19199 1.19940 1.15869 1.22218 1.00670 0.99601 0.95466 1.21808 0.77491 1.02113 0.99095 0.88997 0.93889 0.93732 0.90367 0.90167 0.89690 0.90276 0.89943 0.91381 0.91073 0.91352 0.76819 0.88615 0.88522 0.91953 0.89521 0.91371 0.88477 0.91553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 101.05 1.11 1.31 16 2 O -0.37 -4.15 10.24 -55.14 -0.56 -4.71 16 3 C 0.04 0.38 4.91 36.00 0.18 0.55 16 4 C 0.51 6.15 7.70 -10.99 -0.08 6.07 16 5 O -0.51 -8.95 15.78 -14.35 -0.23 -9.18 16 6 N -0.61 -5.59 2.24 -172.54 -0.39 -5.97 16 7 C 0.10 0.52 5.17 -4.08 -0.02 0.50 16 8 C -0.14 -0.70 5.62 -28.58 -0.16 -0.86 16 9 C -0.13 -0.84 4.70 -29.79 -0.14 -0.97 16 10 C 0.15 1.61 2.06 -69.21 -0.14 1.46 16 11 H 0.09 1.29 6.92 -51.93 -0.36 0.93 16 12 N -0.74 -8.98 4.93 -55.06 -0.27 -9.25 16 13 C 0.53 9.36 7.67 -10.99 -0.08 9.27 16 14 O -0.51 -11.30 15.52 5.56 0.09 -11.21 16 15 C -0.12 -2.40 6.16 36.00 0.22 -2.17 16 16 S -0.14 -3.62 18.55 -107.50 -1.99 -5.62 16 17 C -0.52 -15.14 10.04 30.94 0.31 -14.83 16 18 H 0.09 2.64 8.03 -52.49 -0.42 2.22 16 19 C 0.10 2.82 5.50 -17.43 -0.10 2.73 16 20 N -0.88 -26.78 13.97 55.49 0.78 -26.01 16 21 Si 0.86 22.17 27.74 -169.99 -4.72 17.46 16 22 H -0.27 -6.85 7.11 56.52 0.40 -6.44 16 23 H -0.27 -6.82 7.11 56.52 0.40 -6.42 16 24 H -0.23 -6.10 6.74 56.52 0.38 -5.72 16 25 C -0.14 -1.38 5.39 -27.30 -0.15 -1.53 16 26 C 0.12 1.23 6.10 -2.94 -0.02 1.21 16 27 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.04 0.20 8.14 -51.92 -0.42 -0.22 16 29 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.08 0.41 7.30 -51.93 -0.38 0.03 16 31 H 0.08 0.51 7.09 -51.93 -0.37 0.14 16 32 H 0.08 0.32 8.06 -51.93 -0.42 -0.10 16 33 H 0.08 0.23 6.25 -51.93 -0.32 -0.10 16 34 H 0.08 0.24 8.14 -51.93 -0.42 -0.19 16 35 H 0.07 0.45 7.28 -51.93 -0.38 0.07 16 36 H 0.07 0.47 8.04 -51.93 -0.42 0.05 16 37 H 0.07 0.34 7.35 -51.93 -0.38 -0.04 16 38 H 0.40 3.64 8.60 -40.82 -0.35 3.29 16 39 H 0.10 1.72 8.14 -51.91 -0.42 1.30 16 40 H 0.10 1.72 8.14 -51.91 -0.42 1.30 16 41 H 0.27 7.65 8.31 -40.82 -0.34 7.31 16 42 H 0.09 1.05 7.85 -51.93 -0.41 0.65 16 43 H 0.07 0.49 7.31 -51.93 -0.38 0.11 16 44 H 0.10 1.40 6.95 -51.93 -0.36 1.04 16 45 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 374.27 15.07 5.64 5.64 Total: -1.00 -39.03 374.27 -7.79 -46.82 By element: Atomic # 1 Polarization: 6.35 SS G_CDS: -7.06 Total: -0.71 kcal Atomic # 6 Polarization: 1.82 SS G_CDS: 0.93 Total: 2.74 kcal Atomic # 7 Polarization: -41.34 SS G_CDS: 0.12 Total: -41.23 kcal Atomic # 8 Polarization: -24.40 SS G_CDS: -0.70 Total: -25.11 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -4.72 Total: 17.46 kcal Atomic # 16 Polarization: -3.62 SS G_CDS: -1.99 Total: -5.62 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -39.03 -7.79 -46.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001065877346.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.567 kcal (2) G-P(sol) polarization free energy of solvation -39.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds