Wall clock time and date at job start Tue Mar 31 2020 05:45:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42903 * 114.00208 * 2 1 4 4 C 1.50696 * 109.47673 * 180.02562 * 3 2 1 5 5 O 1.21279 * 119.99578 * 359.97438 * 4 3 2 6 6 N 1.34777 * 120.00363 * 180.02562 * 4 3 2 7 7 C 1.44578 * 118.64147 * 359.97438 * 6 4 3 8 8 C 1.54867 * 109.60611 * 270.72904 * 7 6 4 9 9 C 1.47096 * 110.31769 * 288.73940 * 8 7 6 10 10 C 1.52565 * 114.32743 * 62.80063 * 9 8 7 11 11 H 1.09005 * 109.49063 * 34.94789 * 10 9 8 12 12 N 1.46503 * 109.49159 * 154.99071 * 10 9 8 13 13 C 1.34772 * 120.00003 * 205.00222 * 12 10 9 14 14 O 1.21278 * 120.00259 * 359.97438 * 13 12 10 15 15 C 1.50696 * 119.99744 * 180.02562 * 13 12 10 16 16 S 1.81001 * 109.47232 * 179.97438 * 15 13 12 17 17 C 1.76203 * 100.00280 * 179.97438 * 16 15 13 18 18 H 1.07997 * 119.99611 * 0.02562 * 17 16 15 19 19 C 1.38794 * 119.99804 * 179.97438 * 17 16 15 20 20 N 1.31630 * 119.99904 * 179.97438 * 19 17 16 21 21 Si 1.86800 * 120.00280 * 0.02562 * 19 17 16 22 22 H 1.48503 * 109.47005 * 90.00143 * 21 19 17 23 23 H 1.48505 * 109.47029 * 209.99567 * 21 19 17 24 24 H 1.48494 * 109.47259 * 329.99925 * 21 19 17 25 25 C 1.50884 * 109.35554 * 274.98236 * 10 9 8 26 26 C 1.47601 * 118.64184 * 179.97438 * 6 4 3 27 27 H 1.09001 * 109.47324 * 180.02562 * 1 2 3 28 28 H 1.09008 * 109.46675 * 299.99616 * 1 2 3 29 29 H 1.09003 * 109.47471 * 59.99258 * 1 2 3 30 30 H 1.09003 * 109.46870 * 59.99899 * 3 2 1 31 31 H 1.09004 * 109.47198 * 300.00840 * 3 2 1 32 32 H 1.09003 * 109.44609 * 150.68968 * 7 6 4 33 33 H 1.08997 * 109.44777 * 30.76961 * 7 6 4 34 34 H 1.09003 * 109.32636 * 168.47903 * 8 7 6 35 35 H 1.09000 * 109.32612 * 48.99705 * 8 7 6 36 36 H 1.09003 * 108.51039 * 184.05365 * 9 8 7 37 37 H 1.09002 * 108.51166 * 301.70182 * 9 8 7 38 38 H 0.97002 * 119.99521 * 25.00155 * 12 10 9 39 39 H 1.09005 * 109.47063 * 299.99005 * 15 13 12 40 40 H 1.09003 * 109.47974 * 59.99389 * 15 13 12 41 41 H 0.97001 * 120.00353 * 179.97438 * 20 19 17 42 42 H 1.09001 * 109.36367 * 212.08135 * 25 10 9 43 43 H 1.08997 * 109.36350 * 331.82501 * 25 10 9 44 44 H 1.08997 * 108.95368 * 17.18033 * 26 6 4 45 45 H 1.08997 * 108.94482 * 258.54638 * 26 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1866 -0.0006 5 8 4.0341 0.0917 -0.0006 6 7 4.2765 2.2969 -0.0002 7 6 3.6239 3.5871 0.0003 8 6 3.3728 4.0429 -1.4583 9 6 4.6423 4.4095 -2.1046 10 6 5.6366 3.2596 -2.2342 11 1 5.0964 2.3305 -2.4164 12 7 6.5461 3.5235 -3.3520 13 6 7.1544 2.4990 -3.9821 14 8 6.9492 1.3588 -3.6234 15 6 8.0903 2.7705 -5.1315 16 16 8.7431 1.2041 -5.7610 17 6 9.7748 1.8017 -7.0584 18 1 9.8453 2.8627 -7.2468 19 6 10.4975 0.9088 -7.8374 20 7 11.2678 1.3552 -8.8069 21 14 10.3760 -0.9264 -7.5109 22 1 9.2706 -1.5008 -8.3192 23 1 11.6551 -1.5815 -7.8853 24 1 10.1059 -1.1558 -6.0688 25 6 6.4302 3.1384 -0.9566 26 6 5.7447 2.1455 -0.0003 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 1.6886 1.8464 0.8900 31 1 1.6885 1.8465 -0.8899 32 1 4.2599 4.3152 0.5037 33 1 2.6721 3.5121 0.5260 34 1 2.7063 4.9055 -1.4570 35 1 2.9060 3.2303 -2.0150 36 1 4.4250 4.7932 -3.1015 37 1 5.1097 5.2044 -1.5234 38 1 6.7105 4.4355 -3.6386 39 1 7.5500 3.2849 -5.9263 40 1 8.9148 3.3959 -4.7890 41 1 11.7733 0.7313 -9.3511 42 1 7.4345 2.7832 -1.1874 43 1 6.4935 4.1148 -0.4765 44 1 5.9958 1.1296 -0.3052 45 1 6.1177 2.3125 1.0102 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001065877346.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:03 Heat of formation + Delta-G solvation = -142.155121 kcal Electronic energy + Delta-G solvation = -26438.442852 eV Core-core repulsion = 22581.317628 eV Total energy + Delta-G solvation = -3857.125223 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.70499 -40.69746 -38.95178 -38.18662 -36.13538 -34.69481 -33.95465 -33.32773 -30.86465 -29.63846 -27.90479 -27.53553 -26.86841 -25.77047 -23.05776 -21.84085 -21.70316 -20.00651 -19.87263 -18.53236 -17.93853 -17.83405 -17.59863 -17.20318 -17.07866 -16.72414 -16.46059 -16.04794 -15.83030 -15.59325 -15.24157 -14.97214 -14.82292 -14.73011 -14.26814 -14.23159 -13.88678 -13.46839 -13.43760 -13.36567 -13.13203 -13.04116 -12.85354 -12.68152 -12.41591 -12.23793 -12.01366 -11.88977 -11.65990 -11.61482 -11.19694 -10.98121 -10.83456 -10.74035 -10.54493 -10.22422 -9.67011 -9.02491 -8.54055 -6.24586 0.96695 1.28297 1.44802 1.48762 1.53203 1.55302 1.73638 2.19210 2.23931 2.70368 2.84178 2.97619 3.50159 3.66373 3.79417 3.83623 3.97608 4.03412 4.09245 4.15784 4.21771 4.23805 4.32127 4.43479 4.46334 4.48245 4.56210 4.62623 4.70413 4.79685 4.86121 4.90641 4.97157 5.11425 5.12534 5.24484 5.36182 5.51424 5.57745 5.68848 6.02369 6.09115 6.37443 6.48899 6.91678 7.12592 7.22217 8.58230 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.017196 B = 0.002627 C = 0.002425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1627.882537 B =10656.070147 C =11545.280872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.414 6.414 3 C 0.048 3.952 4 C 0.494 3.506 5 O -0.584 6.584 6 N -0.598 5.598 7 C 0.094 3.906 8 C -0.135 4.135 9 C -0.121 4.121 10 C 0.146 3.854 11 H 0.046 0.954 12 N -0.707 5.707 13 C 0.531 3.469 14 O -0.565 6.565 15 C -0.108 4.108 16 S -0.185 6.185 17 C -0.526 4.526 18 H 0.065 0.935 19 C 0.047 3.953 20 N -0.915 5.915 21 Si 0.911 3.089 22 H -0.263 1.263 23 H -0.257 1.257 24 H -0.241 1.241 25 C -0.132 4.132 26 C 0.118 3.882 27 H 0.090 0.910 28 H 0.066 0.934 29 H 0.058 0.942 30 H 0.119 0.881 31 H 0.105 0.895 32 H 0.110 0.890 33 H 0.109 0.891 34 H 0.121 0.879 35 H 0.048 0.952 36 H 0.076 0.924 37 H 0.100 0.900 38 H 0.418 0.582 39 H 0.114 0.886 40 H 0.116 0.884 41 H 0.277 0.723 42 H 0.058 0.942 43 H 0.111 0.889 44 H 0.043 0.957 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.693 14.387 22.614 35.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.333 6.333 3 C -0.031 4.031 4 C 0.283 3.717 5 O -0.463 6.463 6 N -0.331 5.331 7 C -0.028 4.028 8 C -0.174 4.174 9 C -0.159 4.159 10 C 0.042 3.958 11 H 0.064 0.936 12 N -0.361 5.361 13 C 0.317 3.683 14 O -0.443 6.443 15 C -0.259 4.259 16 S 0.042 5.958 17 C -0.673 4.673 18 H 0.083 0.917 19 C -0.158 4.158 20 N -0.553 5.553 21 Si 0.734 3.266 22 H -0.188 1.188 23 H -0.181 1.181 24 H -0.165 1.165 25 C -0.171 4.171 26 C -0.005 4.005 27 H 0.108 0.892 28 H 0.085 0.915 29 H 0.077 0.923 30 H 0.136 0.864 31 H 0.122 0.878 32 H 0.129 0.871 33 H 0.127 0.873 34 H 0.139 0.861 35 H 0.067 0.933 36 H 0.094 0.906 37 H 0.118 0.882 38 H 0.256 0.744 39 H 0.132 0.868 40 H 0.134 0.866 41 H 0.087 0.913 42 H 0.076 0.924 43 H 0.129 0.871 44 H 0.062 0.938 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -23.522 11.785 23.070 34.992 hybrid contribution 0.868 0.675 -1.267 1.678 sum -22.654 12.460 21.803 33.820 Atomic orbital electron populations 1.23038 0.78153 1.04075 1.01834 1.87989 1.22339 1.27195 1.95785 1.22511 0.88759 0.86594 1.05208 1.21254 0.90709 0.84120 0.75636 1.90730 1.75814 1.29132 1.50637 1.47781 1.05910 1.06914 1.72516 1.22154 0.99848 0.83239 0.97526 1.21314 0.97372 1.03131 0.95546 1.20726 0.95400 0.96453 1.03287 1.20533 0.90429 0.99899 0.84974 0.93605 1.45887 1.46503 1.09412 1.34329 1.20040 0.80274 0.85214 0.82775 1.90736 1.63425 1.23502 1.66634 1.23265 1.01755 1.01431 0.99485 1.84877 1.57597 1.11853 1.41484 1.22435 1.30512 0.96455 1.17921 0.91666 1.25509 0.93414 1.03286 0.93613 1.70004 1.28251 1.37234 1.19794 0.85911 0.79149 0.80221 0.81356 1.18823 1.18127 1.16518 1.22152 0.98672 1.01155 0.95077 1.21663 0.79103 0.99536 1.00180 0.89192 0.91539 0.92315 0.86373 0.87766 0.87134 0.87252 0.86102 0.93310 0.90584 0.88186 0.74422 0.86791 0.86601 0.91331 0.92378 0.87092 0.93809 0.89541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 11.01 113.37 1.25 1.54 16 2 O -0.41 -9.32 10.24 -129.94 -1.33 -10.65 16 3 C 0.05 0.73 4.91 71.23 0.35 1.08 16 4 C 0.49 12.18 7.70 87.66 0.67 12.85 16 5 O -0.58 -22.41 15.78 16.01 0.25 -22.16 16 6 N -0.60 -10.26 2.24 -818.18 -1.83 -12.09 16 7 C 0.09 0.51 5.17 87.38 0.45 0.96 16 8 C -0.13 -0.75 5.62 29.40 0.17 -0.59 16 9 C -0.12 -1.07 4.70 28.61 0.13 -0.93 16 10 C 0.15 2.91 2.06 44.16 0.09 3.00 16 11 H 0.05 1.36 6.92 -2.38 -0.02 1.34 16 12 N -0.71 -16.09 4.93 -446.51 -2.20 -18.29 16 13 C 0.53 18.78 7.67 87.66 0.67 19.45 16 14 O -0.56 -25.93 15.52 -3.02 -0.05 -25.98 16 15 C -0.11 -4.13 6.16 71.23 0.44 -3.69 16 16 S -0.18 -9.65 18.55 -56.49 -1.05 -10.69 16 17 C -0.53 -31.05 10.04 67.95 0.68 -30.37 16 18 H 0.07 4.02 8.03 -2.91 -0.02 3.99 16 19 C 0.05 2.83 5.50 84.86 0.47 3.29 16 20 N -0.91 -56.26 13.97 21.65 0.30 -55.96 16 21 Si 0.91 46.42 27.74 68.60 1.90 48.32 16 22 H -0.26 -13.15 7.11 99.48 0.71 -12.44 16 23 H -0.26 -12.22 7.11 99.48 0.71 -11.51 16 24 H -0.24 -12.44 6.74 99.48 0.67 -11.77 16 25 C -0.13 -2.40 5.39 30.23 0.16 -2.24 16 26 C 0.12 2.52 6.10 86.49 0.53 3.05 16 27 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.07 0.44 8.14 -2.38 -0.02 0.42 16 29 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.12 0.79 7.30 -2.39 -0.02 0.77 16 31 H 0.10 1.04 7.09 -2.39 -0.02 1.02 16 32 H 0.11 0.14 8.06 -2.39 -0.02 0.12 16 33 H 0.11 0.01 6.25 -2.39 -0.01 -0.01 16 34 H 0.12 -0.11 8.14 -2.39 -0.02 -0.13 16 35 H 0.05 0.50 7.28 -2.39 -0.02 0.48 16 36 H 0.08 0.66 8.04 -2.39 -0.02 0.64 16 37 H 0.10 0.34 7.35 -2.39 -0.02 0.32 16 38 H 0.42 6.26 8.60 -92.71 -0.80 5.46 16 39 H 0.11 3.94 8.14 -2.39 -0.02 3.92 16 40 H 0.12 3.99 8.14 -2.39 -0.02 3.97 16 41 H 0.28 15.77 8.31 -92.71 -0.77 15.00 16 42 H 0.06 1.42 7.85 -2.39 -0.02 1.40 16 43 H 0.11 1.09 7.31 -2.39 -0.02 1.07 16 44 H 0.04 1.42 6.95 -2.39 -0.02 1.40 16 45 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 Total: -1.00 -93.92 374.27 2.23 -91.69 By element: Atomic # 1 Polarization: 8.22 SS G_CDS: 0.16 Total: 8.39 kcal Atomic # 6 Polarization: 1.36 SS G_CDS: 6.07 Total: 7.42 kcal Atomic # 7 Polarization: -82.61 SS G_CDS: -3.73 Total: -86.34 kcal Atomic # 8 Polarization: -57.67 SS G_CDS: -1.12 Total: -58.79 kcal Atomic # 14 Polarization: 46.42 SS G_CDS: 1.90 Total: 48.32 kcal Atomic # 16 Polarization: -9.65 SS G_CDS: -1.05 Total: -10.69 kcal Total: -93.92 2.23 -91.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001065877346.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.462 kcal (2) G-P(sol) polarization free energy of solvation -93.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds