Wall clock time and date at job start Tue Mar 31 2020 05:24:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46504 * 119.99641 * 2 1 4 4 C 1.52997 * 109.46963 * 84.71040 * 3 2 1 5 5 H 1.08996 * 112.96523 * 291.98509 * 4 3 2 6 6 C 1.53940 * 113.76918 * 63.66572 * 4 3 2 7 7 C 1.53947 * 86.29231 * 137.90828 * 6 4 3 8 8 N 1.47578 * 86.11360 * 336.39238 * 7 6 4 9 9 C 1.36938 * 134.49350 * 204.63920 * 8 7 6 10 10 H 1.07997 * 120.00147 * 173.78232 * 9 8 7 11 11 C 1.38822 * 119.99986 * 353.78749 * 9 8 7 12 12 N 1.31621 * 119.99714 * 359.97438 * 11 9 8 13 13 Si 1.86796 * 119.99919 * 179.97438 * 11 9 8 14 14 H 1.48494 * 109.47163 * 89.99924 * 13 11 9 15 15 H 1.48510 * 109.46861 * 209.99888 * 13 11 9 16 16 H 1.48499 * 109.47501 * 329.99594 * 13 11 9 17 17 C 1.34769 * 120.00349 * 180.02562 * 2 1 3 18 18 O 1.21281 * 120.00316 * 179.97438 * 17 2 1 19 19 C 1.50706 * 119.99800 * 359.97438 * 17 2 1 20 20 H 1.08993 * 109.38764 * 60.00174 * 19 17 2 21 21 C 1.52596 * 109.38291 * 300.21196 * 19 17 2 22 22 C 1.52631 * 110.61506 * 169.75029 * 21 19 17 23 23 C 1.53036 * 109.89764 * 70.14465 * 22 21 19 24 24 S 1.81673 * 108.99765 * 296.30635 * 23 22 21 25 25 O 1.42096 * 108.66269 * 299.97099 * 24 23 22 26 26 O 1.42097 * 108.66112 * 168.62979 * 24 23 22 27 27 C 1.53037 * 109.38558 * 179.79769 * 19 17 2 28 28 H 1.08998 * 109.46453 * 274.14963 * 1 2 3 29 29 H 1.08994 * 109.46802 * 154.15257 * 1 2 3 30 30 H 1.09004 * 109.47077 * 34.14930 * 1 2 3 31 31 H 1.09006 * 109.46960 * 204.70487 * 3 2 1 32 32 H 1.08998 * 109.47158 * 324.70277 * 3 2 1 33 33 H 1.09006 * 113.73969 * 252.25050 * 6 4 3 34 34 H 1.09003 * 113.74631 * 23.45543 * 6 4 3 35 35 H 1.09002 * 113.77023 * 90.69308 * 7 6 4 36 36 H 1.08997 * 113.77091 * 221.97994 * 7 6 4 37 37 H 0.96996 * 120.00056 * 180.02562 * 12 11 9 38 38 H 1.08999 * 109.24552 * 290.15457 * 21 19 17 39 39 H 1.09004 * 109.23762 * 49.56009 * 21 19 17 40 40 H 1.09005 * 109.46415 * 309.98844 * 22 21 19 41 41 H 1.09006 * 109.30705 * 190.20039 * 22 21 19 42 42 H 1.09000 * 109.54874 * 176.45250 * 23 22 21 43 43 H 1.08996 * 109.54951 * 56.16551 * 23 22 21 44 44 H 1.09005 * 109.54702 * 303.65891 * 27 19 17 45 45 H 1.08996 * 109.55439 * 63.85073 * 27 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.3373 1.7769 1.4363 5 1 1.3865 2.0804 1.8745 6 6 3.1716 0.8537 2.3426 7 6 3.8128 2.1402 2.8937 8 7 3.4196 2.7641 1.6154 9 6 3.8757 3.8307 0.8876 10 1 3.4678 4.0297 -0.0923 11 6 4.8624 4.6560 1.4095 12 7 5.3591 4.4136 2.6041 13 14 5.4850 6.1105 0.4165 14 1 4.6659 7.3093 0.7277 15 1 6.9040 6.3764 0.7648 16 1 5.3805 5.8019 -1.0323 17 6 2.1390 -1.1671 -0.0005 18 8 3.3518 -1.1671 -0.0010 19 6 1.3855 -2.4723 -0.0005 20 1 0.7590 -2.5284 -0.8907 21 6 0.5054 -2.5490 1.2437 22 6 -0.4547 -3.7319 1.1508 23 6 0.3215 -5.0442 1.2827 24 16 1.4653 -5.1984 -0.1203 25 8 0.7107 -5.1968 -1.3244 26 8 2.3613 -6.2703 0.1393 27 6 2.3817 -3.6339 -0.0063 28 1 -0.3632 0.0744 1.0250 29 1 -0.3633 -0.9248 -0.4480 30 1 -0.3633 0.8505 -0.5769 31 1 3.1877 1.1167 -0.4295 32 1 1.6527 2.0028 -0.5938 33 1 2.5795 0.3088 3.0780 34 1 3.8657 0.2141 1.7976 35 1 3.2964 2.5520 3.7608 36 1 4.8911 2.0677 3.0358 37 1 6.0483 4.9905 2.9689 38 1 1.1374 -2.6653 2.1242 39 1 -0.0697 -1.6274 1.3343 40 1 -0.9667 -3.7094 0.1888 41 1 -1.1892 -3.6637 1.9533 42 1 -0.3756 -5.8822 1.2789 43 1 0.8860 -5.0419 2.2151 44 1 3.0483 -3.5385 -0.8634 45 1 2.9660 -3.6180 0.9137 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085849317.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:21 Heat of formation + Delta-G solvation = -41.603521 kcal Electronic energy + Delta-G solvation = -27552.307048 eV Core-core repulsion = 23699.542070 eV Total energy + Delta-G solvation = -3852.764979 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 1.84 seconds Orbital eigenvalues (eV) -40.45867 -38.00619 -37.39889 -36.64114 -36.31772 -35.37798 -32.40893 -32.08461 -29.09593 -27.81727 -27.70995 -26.74253 -24.56499 -23.27708 -22.39998 -21.68937 -19.29991 -19.18999 -18.95926 -17.63896 -16.90975 -16.68901 -16.29560 -16.09235 -15.69707 -15.64424 -15.31290 -14.74174 -14.62447 -13.99966 -13.89819 -13.60841 -13.48370 -13.36132 -13.00506 -12.69675 -12.48949 -12.39011 -12.31957 -12.29346 -12.02689 -11.89370 -11.57287 -11.48057 -11.31755 -11.14155 -10.97805 -10.85836 -10.67289 -10.61268 -10.44512 -9.88565 -9.74241 -9.64092 -9.42744 -8.78325 -8.41698 -6.84224 -5.74923 -3.06800 -0.31581 2.30161 2.62961 3.02405 3.32462 3.39753 3.44616 3.46846 3.56205 3.98208 4.12027 4.23640 4.29378 4.40534 4.48546 4.63061 4.76144 4.89742 5.04546 5.08560 5.17579 5.20862 5.29429 5.36515 5.39514 5.45893 5.50315 5.54690 5.64785 5.73922 5.86149 5.92446 6.08955 6.34267 6.51630 6.64854 6.74692 6.78833 7.28577 7.42398 7.53999 7.61840 8.00703 8.25333 9.06506 9.73298 10.63901 11.42802 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.026251 B = 0.002791 C = 0.002763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.386157 B =10028.249582 C =10133.127325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.606 5.606 3 C 0.114 3.886 4 C 0.128 3.872 5 H 0.040 0.960 6 C -0.159 4.159 7 C 0.165 3.835 8 N -0.599 5.599 9 C -0.224 4.224 10 H 0.078 0.922 11 C -0.006 4.006 12 N -0.919 5.919 13 Si 0.909 3.091 14 H -0.289 1.289 15 H -0.290 1.290 16 H -0.281 1.281 17 C 0.521 3.479 18 O -0.521 6.521 19 C -0.096 4.096 20 H 0.115 0.885 21 C -0.151 4.151 22 C -0.106 4.106 23 C -0.606 4.606 24 S 2.417 3.583 25 O -0.938 6.938 26 O -0.942 6.942 27 C -0.583 4.583 28 H 0.061 0.939 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.094 0.906 32 H 0.068 0.932 33 H 0.040 0.960 34 H 0.086 0.914 35 H 0.025 0.975 36 H 0.064 0.936 37 H 0.253 0.747 38 H 0.085 0.915 39 H 0.104 0.896 40 H 0.086 0.914 41 H 0.092 0.908 42 H 0.134 0.866 43 H 0.135 0.865 44 H 0.143 0.857 45 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.725 -18.106 -2.129 24.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.340 5.340 3 C -0.009 4.009 4 C 0.020 3.980 5 H 0.058 0.942 6 C -0.198 4.198 7 C 0.040 3.960 8 N -0.326 5.326 9 C -0.352 4.352 10 H 0.096 0.904 11 C -0.203 4.203 12 N -0.566 5.566 13 Si 0.740 3.260 14 H -0.217 1.217 15 H -0.217 1.217 16 H -0.206 1.206 17 C 0.306 3.694 18 O -0.397 6.397 19 C -0.118 4.118 20 H 0.133 0.867 21 C -0.189 4.189 22 C -0.144 4.144 23 C -0.735 4.735 24 S 2.600 3.400 25 O -0.935 6.935 26 O -0.939 6.939 27 C -0.712 4.712 28 H 0.080 0.920 29 H 0.092 0.908 30 H 0.091 0.909 31 H 0.112 0.888 32 H 0.086 0.914 33 H 0.059 0.941 34 H 0.104 0.896 35 H 0.043 0.957 36 H 0.083 0.917 37 H 0.063 0.937 38 H 0.104 0.896 39 H 0.122 0.878 40 H 0.105 0.895 41 H 0.111 0.889 42 H 0.152 0.848 43 H 0.154 0.846 44 H 0.162 0.838 45 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -14.749 -18.516 -2.807 23.838 hybrid contribution 0.156 1.659 0.256 1.686 sum -14.593 -16.857 -2.551 22.441 Atomic orbital electron populations 1.22014 0.80227 1.03091 1.01932 1.47754 1.06629 1.06447 1.73128 1.21884 0.97833 0.82255 0.98914 1.22495 0.92713 0.89913 0.92843 0.94234 1.23846 0.99579 0.97693 0.98658 1.22083 0.99267 0.86348 0.88295 1.45954 1.32320 1.32513 1.21789 1.18978 1.16650 1.02066 0.97490 0.90416 1.24804 0.99835 0.99020 0.96666 1.69836 1.30615 1.39657 1.16487 0.86162 0.78013 0.82647 0.79190 1.21675 1.21656 1.20614 1.20083 0.87939 0.84574 0.76798 1.90741 1.13538 1.86802 1.48588 1.21034 0.96361 0.92846 1.01580 0.86721 1.22076 0.98392 1.01049 0.97353 1.21275 0.98184 0.89881 1.05076 1.30267 1.15894 1.06800 1.20574 1.08045 0.77268 0.77334 0.77386 1.93586 1.71087 1.86700 1.42144 1.93608 1.63829 1.50452 1.85971 1.30163 1.11433 1.15948 1.13673 0.92030 0.90833 0.90908 0.88803 0.91382 0.94094 0.89557 0.95693 0.91738 0.93678 0.89622 0.87815 0.89499 0.88944 0.84764 0.84645 0.83848 0.83966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.56 8.83 59.85 0.53 1.09 16 2 N -0.61 -7.72 2.78 -181.57 -0.50 -8.22 16 3 C 0.11 1.95 5.46 -4.04 -0.02 1.93 16 4 C 0.13 2.54 4.59 -66.87 -0.31 2.23 16 5 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 6 C -0.16 -3.15 7.21 -25.81 -0.19 -3.33 16 7 C 0.17 4.01 7.37 -2.98 -0.02 3.99 16 8 N -0.60 -15.30 3.57 -170.79 -0.61 -15.91 16 9 C -0.22 -6.25 10.51 -15.06 -0.16 -6.41 16 10 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 11 C -0.01 -0.19 5.50 -17.43 -0.10 -0.28 16 12 N -0.92 -27.66 11.56 55.49 0.64 -27.02 16 13 Si 0.91 22.28 29.55 -169.99 -5.02 17.26 16 14 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 15 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 16 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 17 C 0.52 6.90 6.61 -10.99 -0.07 6.83 16 18 O -0.52 -9.24 13.80 5.56 0.08 -9.16 16 19 C -0.10 -0.82 1.56 -91.96 -0.14 -0.96 16 20 H 0.11 0.77 7.27 -51.93 -0.38 0.40 16 21 C -0.15 -0.89 4.50 -27.13 -0.12 -1.01 16 22 C -0.11 -0.43 5.73 -26.90 -0.15 -0.58 16 23 C -0.61 -2.68 6.34 37.18 0.24 -2.44 16 24 S 2.42 19.02 5.31 -107.50 -0.57 18.45 16 25 O -0.94 -10.07 17.94 -57.81 -1.04 -11.11 16 26 O -0.94 -11.05 18.10 -57.81 -1.05 -12.10 16 27 C -0.58 -4.94 4.94 37.18 0.18 -4.76 16 28 H 0.06 0.42 7.06 -51.93 -0.37 0.06 16 29 H 0.07 0.39 5.79 -51.93 -0.30 0.09 16 30 H 0.07 0.55 8.00 -51.93 -0.42 0.13 16 31 H 0.09 1.92 7.27 -51.93 -0.38 1.54 16 32 H 0.07 1.09 8.00 -51.93 -0.42 0.67 16 33 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.09 1.83 6.46 -51.93 -0.34 1.50 16 35 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.06 1.74 7.46 -51.93 -0.39 1.35 16 37 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 38 H 0.09 0.51 8.09 -51.93 -0.42 0.09 16 39 H 0.10 0.54 4.45 -51.93 -0.23 0.31 16 40 H 0.09 0.30 8.01 -51.93 -0.42 -0.11 16 41 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 42 H 0.13 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.14 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.14 1.32 8.00 -51.92 -0.42 0.90 16 45 H 0.14 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 362.05 15.07 5.46 5.46 Total: -1.00 -38.92 362.05 -9.92 -48.84 By element: Atomic # 1 Polarization: 4.19 SS G_CDS: -6.96 Total: -2.77 kcal Atomic # 6 Polarization: -3.38 SS G_CDS: -0.34 Total: -3.71 kcal Atomic # 7 Polarization: -50.68 SS G_CDS: -0.47 Total: -51.15 kcal Atomic # 8 Polarization: -30.36 SS G_CDS: -2.01 Total: -32.37 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Atomic # 16 Polarization: 19.02 SS G_CDS: -0.57 Total: 18.45 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -38.92 -9.92 -48.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085849317.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.235 kcal (2) G-P(sol) polarization free energy of solvation -38.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.85 seconds