Wall clock time and date at job start Tue Mar 31 2020 05:22:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46504 * 120.00046 * 2 1 4 4 C 1.53000 * 109.46970 * 95.03455 * 3 2 1 5 5 H 1.08997 * 112.78022 * 45.13140 * 4 3 2 6 6 C 1.53242 * 113.38463 * 274.42327 * 4 3 2 7 7 C 1.53499 * 83.42830 * 219.28987 * 6 4 3 8 8 N 1.47064 * 113.47018 * 175.90914 * 4 3 2 9 9 C 1.36937 * 136.05553 * 321.94600 * 8 4 3 10 10 H 1.07998 * 119.99992 * 354.76675 * 9 8 4 11 11 C 1.38812 * 119.99804 * 174.49695 * 9 8 4 12 12 N 1.31622 * 120.00141 * 0.27393 * 11 9 8 13 13 Si 1.86801 * 119.99911 * 180.27012 * 11 9 8 14 14 H 1.48500 * 109.46828 * 60.00290 * 13 11 9 15 15 H 1.48501 * 109.47054 * 180.02562 * 13 11 9 16 16 H 1.48502 * 109.47234 * 300.00333 * 13 11 9 17 17 C 1.34777 * 120.00299 * 180.02562 * 2 1 3 18 18 O 1.21280 * 120.00020 * 184.51640 * 17 2 1 19 19 C 1.50695 * 119.99586 * 4.51217 * 17 2 1 20 20 C 1.52591 * 109.24669 * 286.87260 * 19 17 2 21 21 C 1.53048 * 109.98011 * 169.67541 * 20 19 17 22 22 S 1.81675 * 108.96844 * 63.70561 * 21 20 19 23 23 O 1.42096 * 108.66474 * 191.35396 * 22 21 20 24 24 O 1.42104 * 108.74611 * 60.04292 * 22 21 20 25 25 C 1.81676 * 101.30587 * 305.68255 * 22 21 20 26 26 C 1.52588 * 109.24233 * 165.75607 * 19 17 2 27 27 H 1.09004 * 109.47112 * 90.89688 * 1 2 3 28 28 H 1.08991 * 109.47261 * 210.90116 * 1 2 3 29 29 H 1.09007 * 109.47166 * 330.89888 * 1 2 3 30 30 H 1.08999 * 109.47437 * 335.03592 * 3 2 1 31 31 H 1.09004 * 109.47470 * 215.03429 * 3 2 1 32 32 H 1.09004 * 114.32499 * 105.65912 * 6 4 3 33 33 H 1.08994 * 114.19502 * 332.91692 * 6 4 3 34 34 H 1.09002 * 113.46905 * 271.11759 * 7 6 4 35 35 H 1.09000 * 113.51930 * 140.68611 * 7 6 4 36 36 H 0.97004 * 119.99961 * 179.97438 * 12 11 9 37 37 H 1.09002 * 109.24301 * 46.31361 * 19 17 2 38 38 H 1.09002 * 109.37955 * 289.87431 * 20 19 17 39 39 H 1.08996 * 109.38492 * 49.55493 * 20 19 17 40 40 H 1.09000 * 109.58185 * 303.85148 * 21 20 19 41 41 H 1.09000 * 109.55048 * 183.54016 * 21 20 19 42 42 H 1.08998 * 109.54747 * 294.44290 * 25 22 21 43 43 H 1.08996 * 109.62844 * 174.19671 * 25 22 21 44 44 H 1.08996 * 109.38399 * 310.44367 * 26 19 17 45 45 H 1.09008 * 109.38568 * 70.12884 * 26 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.5621 1.6471 1.4369 5 1 2.9609 0.8075 2.0062 6 6 1.4489 2.4058 2.1673 7 6 2.6189 3.2214 2.7348 8 7 3.3849 2.8623 1.5318 9 6 4.4094 3.4180 0.8129 10 1 4.8419 2.8783 -0.0166 11 6 4.8881 4.6775 1.1466 12 7 4.3610 5.3353 2.1575 13 14 6.2805 5.4388 0.1612 14 1 5.8645 5.5775 -1.2576 15 1 6.6049 6.7777 0.7156 16 1 7.4793 4.5661 0.2424 17 6 2.1389 -1.1672 -0.0005 18 8 3.3489 -1.1688 0.0822 19 6 1.3889 -2.4701 -0.1038 20 6 0.6831 -2.7505 1.2197 21 6 -0.2844 -3.9252 1.0578 22 16 0.6649 -5.4210 0.6552 23 8 -0.2401 -6.4384 0.2491 24 8 1.5758 -5.6826 1.7141 25 6 1.6053 -4.8659 -0.7967 26 6 2.3702 -3.5902 -0.4370 27 1 -0.3633 -0.0161 -1.0276 28 1 -0.3633 -0.8817 0.5277 29 1 -0.3634 0.8980 0.4998 30 1 1.5724 2.0493 -0.4337 31 1 3.1079 1.1627 -0.5900 32 1 0.9148 1.8137 2.9104 33 1 0.7877 2.9705 1.5100 34 1 3.0329 2.8053 3.6533 35 1 2.4082 4.2880 2.8130 36 1 4.6959 6.2153 2.3910 37 1 0.6462 -2.3952 -0.8981 38 1 1.4247 -2.9938 1.9807 39 1 0.1277 -1.8649 1.5282 40 1 -0.9871 -3.7115 0.2524 41 1 -0.8302 -4.0792 1.9887 42 1 0.9195 -4.6606 -1.6187 43 1 2.3102 -5.6419 -1.0950 44 1 2.9893 -3.2892 -1.2820 45 1 3.0075 -3.7817 0.4264 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085853399.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:51 Heat of formation + Delta-G solvation = -38.009111 kcal Electronic energy + Delta-G solvation = -27273.894634 eV Core-core repulsion = 23421.285521 eV Total energy + Delta-G solvation = -3852.609113 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 1.88 seconds Orbital eigenvalues (eV) -40.47194 -38.25388 -37.43382 -36.55061 -36.35442 -35.40116 -32.33634 -32.15120 -29.55499 -27.99895 -27.89065 -26.22676 -24.11279 -23.45631 -22.82400 -21.43061 -19.41294 -19.21719 -19.03055 -17.32550 -17.22122 -16.74212 -16.70914 -16.15563 -16.00901 -15.54773 -14.80343 -14.67256 -14.47811 -14.26507 -13.83089 -13.73082 -13.45264 -13.23083 -12.91959 -12.78467 -12.59857 -12.45514 -12.43345 -12.34059 -12.10057 -11.86254 -11.79989 -11.54826 -11.42939 -11.13438 -11.02631 -10.86204 -10.74959 -10.46667 -10.38978 -9.87373 -9.80936 -9.75983 -9.45760 -8.76492 -8.36182 -6.85745 -5.74041 -3.07720 -0.36833 2.26965 2.58588 2.96280 3.27299 3.41053 3.45409 3.46494 3.55369 3.98199 4.08874 4.18077 4.23257 4.44461 4.47878 4.59498 4.77097 4.84405 4.88210 5.04897 5.16256 5.18907 5.27180 5.32867 5.40449 5.45969 5.51603 5.57683 5.75071 5.75945 5.81053 5.95592 6.14809 6.25145 6.40534 6.49460 6.66951 6.83840 7.24164 7.43401 7.46383 7.59617 8.01406 8.22391 9.06198 9.72859 10.66420 11.42470 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.025688 B = 0.002699 C = 0.002594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.756368 B =10372.648193 C =10793.126527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.608 5.608 3 C 0.117 3.883 4 C 0.135 3.865 5 H 0.046 0.954 6 C -0.167 4.167 7 C 0.148 3.852 8 N -0.600 5.600 9 C -0.216 4.216 10 H 0.079 0.921 11 C -0.007 4.007 12 N -0.921 5.921 13 Si 0.912 3.088 14 H -0.284 1.284 15 H -0.290 1.290 16 H -0.285 1.285 17 C 0.515 3.485 18 O -0.524 6.524 19 C -0.127 4.127 20 C -0.114 4.114 21 C -0.601 4.601 22 S 2.413 3.587 23 O -0.946 6.946 24 O -0.932 6.932 25 C -0.601 4.601 26 C -0.094 4.094 27 H 0.054 0.946 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.052 0.948 33 H 0.075 0.925 34 H 0.021 0.979 35 H 0.076 0.924 36 H 0.253 0.747 37 H 0.105 0.895 38 H 0.096 0.904 39 H 0.104 0.896 40 H 0.136 0.864 41 H 0.140 0.860 42 H 0.133 0.867 43 H 0.138 0.862 44 H 0.096 0.904 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.705 -18.152 -5.455 23.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.341 5.341 3 C -0.006 4.006 4 C 0.027 3.973 5 H 0.063 0.937 6 C -0.205 4.205 7 C 0.023 3.977 8 N -0.326 5.326 9 C -0.343 4.343 10 H 0.097 0.903 11 C -0.204 4.204 12 N -0.568 5.568 13 Si 0.742 3.258 14 H -0.211 1.211 15 H -0.216 1.216 16 H -0.212 1.212 17 C 0.301 3.699 18 O -0.399 6.399 19 C -0.149 4.149 20 C -0.152 4.152 21 C -0.730 4.730 22 S 2.595 3.405 23 O -0.943 6.943 24 O -0.929 6.929 25 C -0.730 4.730 26 C -0.132 4.132 27 H 0.073 0.927 28 H 0.095 0.905 29 H 0.097 0.903 30 H 0.098 0.902 31 H 0.097 0.903 32 H 0.071 0.929 33 H 0.093 0.907 34 H 0.038 0.962 35 H 0.094 0.906 36 H 0.063 0.937 37 H 0.123 0.877 38 H 0.114 0.886 39 H 0.122 0.878 40 H 0.154 0.846 41 H 0.158 0.842 42 H 0.152 0.848 43 H 0.156 0.844 44 H 0.115 0.885 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -13.788 -18.682 -5.076 23.768 hybrid contribution 0.642 1.201 -0.896 1.630 sum -13.145 -17.481 -5.972 22.673 Atomic orbital electron populations 1.22117 0.80112 1.03970 1.01806 1.47891 1.06756 1.06496 1.72966 1.21922 0.96711 0.82398 0.99594 1.22358 0.90487 0.91445 0.93021 0.93704 1.23679 0.96880 0.99933 1.00051 1.22089 0.86793 0.99649 0.89211 1.45603 1.39460 1.19875 1.27648 1.18870 1.08466 0.97863 1.09100 0.90329 1.24780 1.00088 0.96885 0.98610 1.69816 1.43912 1.13754 1.29271 0.86206 0.81932 0.78384 0.79291 1.21073 1.21578 1.21151 1.20146 0.87880 0.84695 0.77134 1.90773 1.13874 1.86918 1.48362 1.21517 0.99072 0.94678 0.99596 1.21478 0.98025 0.98379 0.97294 1.30223 1.12339 1.17662 1.12763 1.08210 0.77078 0.77380 0.77857 1.93596 1.64157 1.53351 1.83187 1.93616 1.63298 1.83366 1.52653 1.30237 1.14071 1.08546 1.20137 1.21105 0.97234 0.89493 1.05409 0.92711 0.90500 0.90254 0.90191 0.90318 0.92950 0.90654 0.96157 0.90552 0.93671 0.87734 0.88557 0.87831 0.84597 0.84205 0.84841 0.84368 0.88517 0.88619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.50 9.78 59.85 0.59 1.09 16 2 N -0.61 -7.76 2.88 -181.57 -0.52 -8.29 16 3 C 0.12 2.00 5.25 -4.04 -0.02 1.98 16 4 C 0.14 2.74 4.28 -72.53 -0.31 2.43 16 5 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 6 C -0.17 -3.01 7.94 -26.35 -0.21 -3.22 16 7 C 0.15 3.49 7.52 -8.50 -0.06 3.43 16 8 N -0.60 -15.38 3.65 -177.14 -0.65 -16.03 16 9 C -0.22 -6.09 10.55 -15.06 -0.16 -6.25 16 10 H 0.08 2.17 7.83 -52.49 -0.41 1.76 16 11 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 12 N -0.92 -27.42 11.42 55.49 0.63 -26.79 16 13 Si 0.91 22.38 29.55 -169.99 -5.02 17.36 16 14 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 15 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 16 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 17 C 0.52 6.85 6.83 -10.99 -0.08 6.77 16 18 O -0.52 -9.54 15.72 5.56 0.09 -9.45 16 19 C -0.13 -1.03 1.50 -92.19 -0.14 -1.17 16 20 C -0.11 -0.76 4.58 -26.92 -0.12 -0.89 16 21 C -0.60 -2.65 6.35 37.18 0.24 -2.41 16 22 S 2.41 17.20 5.30 -107.50 -0.57 16.63 16 23 O -0.95 -9.73 18.10 -57.82 -1.05 -10.78 16 24 O -0.93 -10.52 17.95 -57.82 -1.04 -11.56 16 25 C -0.60 -3.24 6.35 37.18 0.24 -3.00 16 26 C -0.09 -0.77 4.38 -26.92 -0.12 -0.89 16 27 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.08 0.42 4.21 -51.93 -0.22 0.20 16 29 H 0.08 0.65 8.01 -51.93 -0.42 0.23 16 30 H 0.08 1.31 7.78 -51.93 -0.40 0.90 16 31 H 0.08 1.58 7.65 -51.93 -0.40 1.18 16 32 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.07 1.29 7.94 -51.93 -0.41 0.87 16 34 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.08 1.98 6.92 -51.93 -0.36 1.62 16 36 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 37 H 0.10 0.51 7.67 -51.93 -0.40 0.11 16 38 H 0.10 0.77 8.02 -51.93 -0.42 0.35 16 39 H 0.10 0.61 5.36 -51.93 -0.28 0.33 16 40 H 0.14 0.23 8.14 -51.93 -0.42 -0.20 16 41 H 0.14 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.13 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.14 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.10 0.86 7.97 -51.93 -0.41 0.45 16 45 H 0.10 0.91 8.02 -51.92 -0.42 0.50 16 LS Contribution 367.53 15.07 5.54 5.54 Total: -1.00 -39.18 367.53 -9.90 -49.08 By element: Atomic # 1 Polarization: 3.76 SS G_CDS: -7.06 Total: -3.30 kcal Atomic # 6 Polarization: -2.17 SS G_CDS: -0.26 Total: -2.42 kcal Atomic # 7 Polarization: -50.57 SS G_CDS: -0.54 Total: -51.11 kcal Atomic # 8 Polarization: -29.79 SS G_CDS: -2.00 Total: -31.79 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.36 kcal Atomic # 16 Polarization: 17.20 SS G_CDS: -0.57 Total: 16.63 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -39.18 -9.90 -49.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085853399.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.076 kcal (2) G-P(sol) polarization free energy of solvation -39.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.88 seconds