Wall clock time and date at job start Tue Mar 31 2020 05:08:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 S 1.81397 * 109.47363 * 2 1 4 4 O 1.42105 * 108.58015 * 65.50991 * 3 2 1 5 5 O 1.42099 * 108.58127 * 294.48615 * 3 2 1 6 6 C 1.81401 * 101.92121 * 179.97438 * 3 2 1 7 7 C 1.50704 * 109.46983 * 179.97438 * 6 3 2 8 8 O 1.21283 * 119.99904 * 0.02562 * 7 6 3 9 9 N 1.34772 * 119.99598 * 180.02562 * 7 6 3 10 10 C 1.47195 * 126.70869 * 0.02562 * 9 7 6 11 11 C 1.53736 * 106.43099 * 211.33359 * 10 9 7 12 12 H 1.09001 * 112.28414 * 104.36083 * 11 10 9 13 13 C 1.54452 * 109.01408 * 229.45465 * 11 10 9 14 14 N 1.48332 * 104.32444 * 137.92733 * 13 11 10 15 15 C 1.36943 * 128.19986 * 138.17569 * 14 13 11 16 16 H 1.07996 * 119.99782 * 195.95921 * 15 14 13 17 17 C 1.38813 * 119.99635 * 15.95135 * 15 14 13 18 18 N 1.31618 * 120.00311 * 9.48301 * 17 15 14 19 19 Si 1.86796 * 119.99617 * 189.19850 * 17 15 14 20 20 H 1.48505 * 109.47109 * 85.00414 * 19 17 15 21 21 H 1.48497 * 109.47496 * 204.99980 * 19 17 15 22 22 H 1.48497 * 109.47525 * 325.00620 * 19 17 15 23 23 C 1.48335 * 103.60400 * 318.43315 * 14 13 11 24 24 C 1.54072 * 104.51359 * 41.53361 * 23 14 13 25 25 C 1.53005 * 112.57669 * 97.43520 * 24 23 14 26 26 C 1.47199 * 126.69968 * 179.97438 * 9 7 6 27 27 H 1.09003 * 109.46581 * 59.99560 * 1 2 3 28 28 H 1.08993 * 109.47659 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47027 * 300.00369 * 1 2 3 30 30 H 1.09003 * 109.47027 * 239.99630 * 2 1 3 31 31 H 1.09002 * 109.46831 * 119.99952 * 2 1 3 32 32 H 1.09004 * 109.46678 * 60.00755 * 6 3 2 33 33 H 1.08990 * 109.47413 * 300.00243 * 6 3 2 34 34 H 1.09004 * 110.06213 * 92.09322 * 10 9 7 35 35 H 1.09002 * 110.06338 * 330.57634 * 10 9 7 36 36 H 1.09000 * 110.45775 * 19.22010 * 13 11 10 37 37 H 1.09000 * 110.57529 * 256.69373 * 13 11 10 38 38 H 0.96993 * 120.00239 * 179.72496 * 18 17 15 39 39 H 1.09001 * 110.46053 * 160.27639 * 23 14 13 40 40 H 1.08998 * 110.46381 * 282.85975 * 23 14 13 41 41 H 1.08994 * 109.47135 * 302.11362 * 25 24 23 42 42 H 1.08994 * 109.47017 * 62.11477 * 25 24 23 43 43 H 1.08994 * 109.46614 * 182.10909 * 25 24 23 44 44 H 1.09003 * 110.06300 * 267.90263 * 26 9 7 45 45 H 1.08995 * 110.06597 * 29.36491 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 8 1.7593 2.3232 1.2258 5 8 1.7594 2.3232 -1.2258 6 6 3.9330 1.4718 0.0008 7 6 4.6177 2.8143 0.0002 8 8 3.9575 3.8317 -0.0001 9 7 5.9636 2.8842 0.0002 10 6 6.9035 1.7514 0.0001 11 6 8.1506 2.2209 0.7668 12 1 8.2015 1.7994 1.7707 13 6 9.4076 1.8960 -0.0697 14 7 10.2608 3.1017 0.0664 15 6 11.6155 3.1635 0.2567 16 1 12.0722 4.0825 0.5931 17 6 12.4016 2.0447 0.0173 18 7 11.8803 0.9868 -0.5668 19 14 14.2015 2.0438 0.5172 20 1 14.3191 1.6453 1.9429 21 1 14.9499 1.0801 -0.3293 22 1 14.7665 3.4050 0.3355 23 6 9.2982 4.2248 -0.0460 24 6 8.0782 3.7716 0.7787 25 6 8.0822 4.3451 2.1972 26 6 6.7809 4.1085 -0.0009 27 1 -0.3632 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 4.2260 0.9146 -0.8891 33 1 4.2253 0.9148 0.8909 34 1 7.1710 1.4876 -1.0232 35 1 6.4560 0.8941 0.5030 36 1 9.1393 1.7350 -1.1138 37 1 9.9186 1.0205 0.3309 38 1 12.4306 0.2065 -0.7377 39 1 9.7243 5.1354 0.3750 40 1 9.0150 4.3812 -1.0868 41 1 8.9983 4.0472 2.7070 42 1 8.0302 5.4328 2.1494 43 1 7.2208 3.9640 2.7455 44 1 7.0197 4.3978 -1.0243 45 1 6.2465 4.9153 0.5005 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001101474072.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:08:19 Heat of formation + Delta-G solvation = -68.943310 kcal Electronic energy + Delta-G solvation = -27159.024980 eV Core-core repulsion = 23305.074459 eV Total energy + Delta-G solvation = -3853.950521 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 2.18 seconds Orbital eigenvalues (eV) -40.41715 -38.59621 -37.14414 -36.16765 -35.16877 -33.55259 -32.91713 -31.20720 -30.62943 -29.85219 -26.60054 -25.66195 -25.23591 -24.40050 -22.53944 -20.61212 -19.67260 -19.01676 -18.60265 -17.66722 -16.77246 -16.72226 -16.45398 -16.32861 -15.79262 -15.12868 -14.84258 -14.69274 -14.39634 -14.18077 -13.75885 -13.52167 -13.48700 -13.02782 -12.90500 -12.74074 -12.53551 -12.22867 -12.19896 -12.14228 -11.96432 -11.80535 -11.71002 -11.42326 -11.30709 -11.08568 -10.89440 -10.76939 -10.76846 -10.40700 -10.21362 -10.09802 -9.95858 -9.82391 -9.77449 -8.77809 -8.67502 -6.95427 -5.88188 -3.22540 -0.39769 2.35363 2.47394 2.76330 3.32673 3.38665 3.39667 3.50003 3.71240 4.13460 4.22495 4.24037 4.38584 4.63168 4.76478 4.78029 4.78440 4.88328 5.14191 5.18518 5.22957 5.34661 5.40596 5.48831 5.52659 5.56408 5.60172 5.84861 5.94451 5.96686 6.03127 6.17810 6.23862 6.33658 6.47721 6.57160 6.66476 6.80445 7.16858 7.40342 7.44164 7.61607 7.86745 8.10533 9.01575 9.64846 10.42237 11.25886 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.027667 B = 0.002672 C = 0.002537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.791020 B =10477.031834 C =11034.568405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.621 4.621 3 S 2.451 3.549 4 O -0.920 6.920 5 O -0.920 6.920 6 C -0.656 4.656 7 C 0.556 3.444 8 O -0.539 6.539 9 N -0.601 5.601 10 C 0.102 3.898 11 C -0.119 4.119 12 H 0.084 0.916 13 C 0.162 3.838 14 N -0.592 5.592 15 C -0.224 4.224 16 H 0.077 0.923 17 C -0.005 4.005 18 N -0.916 5.916 19 Si 0.912 3.088 20 H -0.288 1.288 21 H -0.290 1.290 22 H -0.280 1.280 23 C 0.136 3.864 24 C -0.085 4.085 25 C -0.120 4.120 26 C 0.114 3.886 27 H 0.074 0.926 28 H 0.082 0.918 29 H 0.074 0.926 30 H 0.133 0.867 31 H 0.133 0.867 32 H 0.159 0.841 33 H 0.159 0.841 34 H 0.079 0.921 35 H 0.072 0.928 36 H 0.025 0.975 37 H 0.090 0.910 38 H 0.254 0.746 39 H 0.051 0.949 40 H 0.028 0.972 41 H 0.065 0.935 42 H 0.052 0.948 43 H 0.047 0.953 44 H 0.075 0.925 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.859 -4.946 2.016 18.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.750 4.750 3 S 2.628 3.372 4 O -0.917 6.917 5 O -0.917 6.917 6 C -0.783 4.783 7 C 0.343 3.657 8 O -0.417 6.417 9 N -0.333 5.333 10 C -0.021 4.021 11 C -0.140 4.140 12 H 0.103 0.897 13 C 0.035 3.965 14 N -0.315 5.315 15 C -0.352 4.352 16 H 0.094 0.906 17 C -0.202 4.202 18 N -0.563 5.563 19 Si 0.742 3.258 20 H -0.215 1.215 21 H -0.217 1.217 22 H -0.206 1.206 23 C 0.009 3.991 24 C -0.088 4.088 25 C -0.178 4.178 26 C -0.009 4.009 27 H 0.093 0.907 28 H 0.100 0.900 29 H 0.093 0.907 30 H 0.152 0.848 31 H 0.152 0.848 32 H 0.177 0.823 33 H 0.177 0.823 34 H 0.097 0.903 35 H 0.090 0.910 36 H 0.043 0.957 37 H 0.109 0.891 38 H 0.064 0.936 39 H 0.070 0.930 40 H 0.046 0.954 41 H 0.084 0.916 42 H 0.071 0.929 43 H 0.066 0.934 44 H 0.093 0.907 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -18.474 -3.769 1.967 18.956 hybrid contribution 1.634 -1.191 0.154 2.027 sum -16.840 -4.959 2.121 17.682 Atomic orbital electron populations 1.21514 0.90139 1.04905 1.03955 1.30339 1.07782 1.25194 1.11699 1.07499 0.76433 0.77454 0.75842 1.93581 1.79861 1.72515 1.45787 1.93581 1.79849 1.72511 1.45785 1.30855 1.28217 1.05835 1.13423 1.18627 0.81629 0.88287 0.77194 1.90849 1.63440 1.36058 1.51395 1.48459 1.03956 1.10033 1.70842 1.22456 0.89511 0.88556 1.01539 1.23293 0.95847 0.94628 1.00277 0.89747 1.21757 0.86824 0.92936 0.94950 1.45028 1.02400 0.99942 1.84124 1.18982 0.80271 0.98197 1.37796 0.90558 1.24877 0.98134 0.97307 0.99904 1.69862 1.35459 1.05443 1.45486 0.86139 0.84307 0.77372 0.77937 1.21463 1.21663 1.20599 1.21780 0.88994 0.92632 0.95647 1.22563 0.94452 0.95742 0.96045 1.21577 1.01698 0.99935 0.94563 1.22536 0.90669 0.86852 1.00819 0.90688 0.89957 0.90690 0.84816 0.84839 0.82294 0.82336 0.90285 0.90989 0.95727 0.89148 0.93563 0.93017 0.95414 0.91568 0.92861 0.93418 0.90696 0.90295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 9.92 37.16 0.37 -0.48 16 2 C -0.62 -3.22 6.52 37.16 0.24 -2.98 16 3 S 2.45 25.31 3.96 -107.50 -0.43 24.89 16 4 O -0.92 -13.04 17.95 -59.53 -1.07 -14.11 16 5 O -0.92 -13.09 17.95 -59.53 -1.07 -14.16 16 6 C -0.66 -5.92 5.27 36.01 0.19 -5.73 16 7 C 0.56 8.22 7.90 -10.99 -0.09 8.14 16 8 O -0.54 -10.01 15.85 2.54 0.04 -9.97 16 9 N -0.60 -8.77 3.32 -170.83 -0.57 -9.33 16 10 C 0.10 1.37 6.38 -3.28 -0.02 1.35 16 11 C -0.12 -1.97 3.71 -88.29 -0.33 -2.29 16 12 H 0.08 1.37 7.93 -51.93 -0.41 0.95 16 13 C 0.16 3.44 5.50 -2.27 -0.01 3.43 16 14 N -0.59 -13.96 3.38 -168.71 -0.57 -14.53 16 15 C -0.22 -5.89 10.37 -15.06 -0.16 -6.04 16 16 H 0.08 1.95 7.85 -52.49 -0.41 1.54 16 17 C -0.01 -0.14 5.40 -17.43 -0.09 -0.23 16 18 N -0.92 -25.31 10.89 55.49 0.60 -24.71 16 19 Si 0.91 21.07 29.56 -169.99 -5.03 16.05 16 20 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 21 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 22 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 23 C 0.14 2.62 6.40 -2.47 -0.02 2.61 16 24 C -0.09 -1.39 1.10 -151.67 -0.17 -1.55 16 25 C -0.12 -1.80 8.65 37.16 0.32 -1.48 16 26 C 0.11 1.74 6.26 -2.57 -0.02 1.73 16 27 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 29 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.13 0.38 8.14 -51.92 -0.42 -0.05 16 31 H 0.13 0.37 8.14 -51.92 -0.42 -0.05 16 32 H 0.16 0.89 8.14 -51.92 -0.42 0.47 16 33 H 0.16 0.88 7.86 -51.93 -0.41 0.47 16 34 H 0.08 1.06 7.11 -51.93 -0.37 0.69 16 35 H 0.07 0.74 7.31 -51.93 -0.38 0.36 16 36 H 0.02 0.55 7.18 -51.93 -0.37 0.17 16 37 H 0.09 2.18 6.45 -51.93 -0.34 1.85 16 38 H 0.25 6.84 8.31 -40.82 -0.34 6.50 16 39 H 0.05 0.97 7.92 -51.93 -0.41 0.56 16 40 H 0.03 0.54 7.18 -51.93 -0.37 0.17 16 41 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 42 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.07 1.14 7.15 -51.93 -0.37 0.77 16 45 H 0.08 1.21 7.65 -51.93 -0.40 0.82 16 LS Contribution 370.70 15.07 5.59 5.59 Total: -1.00 -36.60 370.70 -9.45 -46.05 By element: Atomic # 1 Polarization: 4.96 SS G_CDS: -7.18 Total: -2.22 kcal Atomic # 6 Polarization: -3.76 SS G_CDS: 0.23 Total: -3.54 kcal Atomic # 7 Polarization: -48.04 SS G_CDS: -0.53 Total: -48.57 kcal Atomic # 8 Polarization: -36.14 SS G_CDS: -2.10 Total: -38.24 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.03 Total: 16.05 kcal Atomic # 16 Polarization: 25.31 SS G_CDS: -0.43 Total: 24.89 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -36.60 -9.45 -46.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101474072.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.895 kcal (2) G-P(sol) polarization free energy of solvation -36.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.19 seconds