Wall clock time and date at job start Tue Mar 31 2020 05:54:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 O 1.42096 * 108.57743 * 2 1 4 4 O 1.42105 * 108.57596 * 131.02581 * 2 1 3 5 5 C 1.81393 * 101.92117 * 245.51311 * 2 1 3 6 6 C 1.53003 * 109.47089 * 180.02562 * 5 2 1 7 7 C 1.53001 * 109.47299 * 179.97438 * 6 5 2 8 8 C 1.50699 * 109.47168 * 179.97438 * 7 6 5 9 9 O 1.21270 * 119.99959 * 0.02562 * 8 7 6 10 10 N 1.34774 * 119.99708 * 180.02562 * 8 7 6 11 11 C 1.46506 * 119.99739 * 180.02562 * 10 8 7 12 12 H 1.08999 * 110.55822 * 36.44574 * 11 10 8 13 13 C 1.54852 * 110.62471 * 273.54239 * 11 10 8 14 14 C 1.55844 * 103.45015 * 241.51167 * 13 11 10 15 15 H 1.09000 * 115.56137 * 159.56885 * 14 13 11 16 16 C 1.55848 * 105.06383 * 288.17867 * 14 13 11 17 17 C 1.54855 * 103.44356 * 71.81904 * 16 14 13 18 18 C 1.55845 * 103.44908 * 0.02562 * 17 16 14 19 19 H 1.08998 * 115.56198 * 159.56571 * 18 17 16 20 20 N 1.50240 * 101.04642 * 32.94010 * 14 13 11 21 21 C 1.36935 * 130.83948 * 126.06043 * 20 14 13 22 22 H 1.07996 * 120.00333 * 180.02562 * 21 20 14 23 23 C 1.38815 * 119.99879 * 0.02562 * 21 20 14 24 24 N 1.31616 * 119.99962 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00138 * 180.02562 * 23 21 20 26 26 H 1.48494 * 109.47038 * 60.00229 * 25 23 21 27 27 H 1.48491 * 109.47393 * 180.02562 * 25 23 21 28 28 H 1.48506 * 109.47004 * 300.00177 * 25 23 21 29 29 H 1.09001 * 109.47190 * 54.48554 * 1 2 3 30 30 H 1.09004 * 109.47089 * 174.48687 * 1 2 3 31 31 H 1.09004 * 109.47568 * 294.48697 * 1 2 3 32 32 H 1.09000 * 109.47386 * 299.99782 * 5 2 1 33 33 H 1.09002 * 109.47608 * 60.00113 * 5 2 1 34 34 H 1.08993 * 109.47010 * 299.99827 * 6 5 2 35 35 H 1.09002 * 109.46892 * 60.00156 * 6 5 2 36 36 H 1.09004 * 109.47163 * 300.00327 * 7 6 5 37 37 H 1.09006 * 109.47255 * 59.99582 * 7 6 5 38 38 H 0.97002 * 120.00435 * 359.97438 * 10 8 7 39 39 H 1.09004 * 110.63120 * 0.02562 * 13 11 10 40 40 H 1.09002 * 110.62354 * 123.02115 * 13 11 10 41 41 H 1.08992 * 110.62984 * 190.31246 * 16 14 13 42 42 H 1.09004 * 110.62208 * 313.33818 * 16 14 13 43 43 H 1.09008 * 110.62034 * 118.49277 * 17 16 14 44 44 H 1.08998 * 110.62692 * 241.34772 * 17 16 14 45 45 H 0.96998 * 120.00288 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3469 0.0000 4 8 2.2667 -0.8842 1.0162 5 6 2.1887 -0.7356 -1.6152 6 6 3.7055 -0.8195 -1.7979 7 6 4.0216 -1.4406 -3.1599 8 6 5.5155 -1.5227 -3.3401 9 8 6.2545 -1.1241 -2.4651 10 7 6.0301 -2.0390 -4.4737 11 6 7.4825 -2.1192 -4.6486 12 1 7.9695 -2.3548 -3.7024 13 6 8.0356 -0.7959 -5.2322 14 6 8.6590 -1.2321 -6.5923 15 1 8.7969 -0.4355 -7.3235 16 6 9.9451 -2.0261 -6.2123 17 6 9.3919 -3.3494 -5.6286 18 6 7.8470 -3.1752 -5.7361 19 1 7.2667 -4.0974 -5.7094 20 7 7.7362 -2.3502 -6.9865 21 6 7.0163 -2.5551 -8.1332 22 1 6.3978 -3.4348 -8.2327 23 6 7.0816 -1.6319 -9.1679 24 7 7.8357 -0.5601 -9.0469 25 14 6.0990 -1.9109 -10.7319 26 1 4.6527 -1.9787 -10.4023 27 1 6.3402 -0.7894 -11.6748 28 1 6.5234 -3.1869 -11.3621 29 1 -0.3633 0.5970 -0.8365 30 1 -0.3633 -1.0230 -0.0987 31 1 -0.3634 0.4260 0.9352 32 1 1.7610 -1.7369 -1.6664 33 1 1.7610 -0.1171 -2.4042 34 1 4.1335 0.1815 -1.7465 35 1 4.1327 -1.4384 -1.0088 36 1 3.5935 -2.4418 -3.2109 37 1 3.5941 -0.8222 -3.9493 38 1 5.4390 -2.3581 -5.1734 39 1 7.2294 -0.0796 -5.3912 40 1 8.7990 -0.3766 -4.5768 41 1 10.5518 -2.2204 -7.0966 42 1 10.5215 -1.4863 -5.4608 43 1 9.7244 -4.2001 -6.2237 44 1 9.6964 -3.4674 -4.5887 45 1 7.8817 0.0848 -9.7700 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001111132397.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:03 Heat of formation + Delta-G solvation = -70.004915 kcal Electronic energy + Delta-G solvation = -26538.845768 eV Core-core repulsion = 22684.849212 eV Total energy + Delta-G solvation = -3853.996556 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 1.78 seconds Orbital eigenvalues (eV) -39.84158 -38.49125 -37.24416 -36.29849 -34.79546 -33.75827 -32.55181 -30.12730 -29.33077 -29.13593 -28.52253 -27.20926 -24.24538 -22.85703 -21.16361 -19.89480 -19.70324 -19.14409 -18.64662 -17.23289 -17.03442 -16.63929 -16.61516 -16.00546 -15.77198 -15.57660 -14.84254 -14.26129 -14.05467 -13.90051 -13.79521 -13.60782 -13.45588 -13.16274 -12.63225 -12.50626 -12.32979 -12.24517 -12.07370 -12.03119 -11.83467 -11.35034 -11.25321 -11.14121 -11.08015 -10.97736 -10.92100 -10.78854 -10.51972 -10.37329 -10.15195 -9.95167 -9.68357 -9.25617 -9.14066 -8.98997 -8.45393 -6.98507 -5.77965 -3.17226 -0.35678 2.42525 2.96608 3.27374 3.32364 3.37284 3.39271 3.62915 3.66641 4.31063 4.33864 4.37127 4.37820 4.63961 4.74237 5.08407 5.10367 5.19121 5.19897 5.25841 5.32805 5.50800 5.63245 5.67852 5.77701 5.85853 5.93372 6.04474 6.10905 6.14146 6.30577 6.41612 6.48948 6.59319 6.74104 6.82294 6.94328 7.11768 7.31765 7.43290 7.76724 7.99039 8.12753 8.62171 9.03484 9.66698 10.48381 11.31071 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.016163 B = 0.002622 C = 0.002382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1731.957238 B =10675.801232 C =11752.043663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.659 4.659 2 S 2.423 3.577 3 O -0.937 6.937 4 O -0.939 6.939 5 C -0.611 4.611 6 C -0.096 4.096 7 C -0.134 4.134 8 C 0.506 3.494 9 O -0.552 6.552 10 N -0.706 5.706 11 C 0.128 3.872 12 H 0.077 0.923 13 C -0.142 4.142 14 C 0.156 3.844 15 H 0.151 0.849 16 C -0.140 4.140 17 C -0.128 4.128 18 C 0.126 3.874 19 H 0.087 0.913 20 N -0.590 5.590 21 C -0.217 4.217 22 H 0.077 0.923 23 C -0.009 4.009 24 N -0.919 5.919 25 Si 0.915 3.085 26 H -0.287 1.287 27 H -0.290 1.290 28 H -0.286 1.286 29 H 0.128 0.872 30 H 0.127 0.873 31 H 0.128 0.872 32 H 0.133 0.867 33 H 0.134 0.866 34 H 0.088 0.912 35 H 0.087 0.913 36 H 0.094 0.906 37 H 0.096 0.904 38 H 0.402 0.598 39 H 0.058 0.942 40 H 0.053 0.947 41 H 0.055 0.945 42 H 0.048 0.952 43 H 0.056 0.944 44 H 0.051 0.949 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.140 -2.020 13.062 18.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.808 4.808 2 S 2.604 3.396 3 O -0.934 6.934 4 O -0.936 6.936 5 C -0.740 4.740 6 C -0.134 4.134 7 C -0.175 4.175 8 C 0.292 3.708 9 O -0.430 6.430 10 N -0.355 5.355 11 C 0.022 3.978 12 H 0.095 0.905 13 C -0.183 4.183 14 C 0.049 3.951 15 H 0.168 0.832 16 C -0.179 4.179 17 C -0.168 4.168 18 C 0.017 3.983 19 H 0.105 0.895 20 N -0.310 5.310 21 C -0.345 4.345 22 H 0.095 0.905 23 C -0.205 4.205 24 N -0.566 5.566 25 Si 0.746 3.254 26 H -0.213 1.213 27 H -0.216 1.216 28 H -0.213 1.213 29 H 0.146 0.854 30 H 0.146 0.854 31 H 0.146 0.854 32 H 0.151 0.849 33 H 0.152 0.848 34 H 0.107 0.893 35 H 0.106 0.894 36 H 0.112 0.888 37 H 0.115 0.885 38 H 0.237 0.763 39 H 0.077 0.923 40 H 0.072 0.928 41 H 0.074 0.926 42 H 0.067 0.933 43 H 0.075 0.925 44 H 0.070 0.930 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -12.153 -1.348 14.017 18.601 hybrid contribution -1.497 -0.630 -1.876 2.481 sum -13.650 -1.978 12.142 18.375 Atomic orbital electron populations 1.30305 1.27287 1.11452 1.11729 1.07811 0.78046 0.75893 0.77803 1.93615 1.78800 1.34515 1.86504 1.93608 1.78860 1.67044 1.54090 1.30368 1.06547 1.13971 1.23112 1.21042 0.89473 1.04190 0.98744 1.21610 0.94016 1.03359 0.98527 1.20506 0.90398 0.77710 0.82236 1.90679 1.61629 1.48430 1.42299 1.46034 1.08797 1.62201 1.18468 1.22645 0.78955 0.98051 0.98172 0.90479 1.23449 0.99903 0.95977 0.98932 1.23692 0.86263 0.92551 0.92549 0.83227 1.23072 0.99468 0.96421 0.98932 1.22886 0.96786 0.98351 0.98813 1.23136 0.94645 0.93186 0.87292 0.89466 1.46485 1.51131 1.21141 1.12269 1.18947 1.19504 1.05138 0.90882 0.90485 1.24707 1.00361 0.97037 0.98418 1.69481 1.42397 1.12225 1.32534 0.86146 0.79360 0.77027 0.82860 1.21331 1.21617 1.21301 0.85364 0.85416 0.85362 0.84883 0.84785 0.89301 0.89395 0.88781 0.88549 0.76348 0.92295 0.92846 0.92634 0.93297 0.92489 0.92992 0.93469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -2.17 10.62 101.05 1.07 -1.10 16 2 S 2.42 17.63 5.36 -107.50 -0.58 17.05 16 3 O -0.94 -10.97 18.10 -57.83 -1.05 -12.01 16 4 O -0.94 -10.69 18.10 -57.83 -1.05 -11.74 16 5 C -0.61 -3.58 5.81 37.16 0.22 -3.36 16 6 C -0.10 -1.00 4.51 -26.73 -0.12 -1.12 16 7 C -0.13 -1.44 5.70 -27.88 -0.16 -1.60 16 8 C 0.51 7.98 7.83 -10.99 -0.09 7.90 16 9 O -0.55 -10.69 15.70 5.57 0.09 -10.60 16 10 N -0.71 -11.56 5.10 -51.37 -0.26 -11.82 16 11 C 0.13 2.35 2.73 -65.40 -0.18 2.18 16 12 H 0.08 1.43 7.37 -51.93 -0.38 1.05 16 13 C -0.14 -2.90 6.22 -24.24 -0.15 -3.05 16 14 C 0.16 3.52 4.69 -62.80 -0.29 3.22 16 15 H 0.15 3.88 5.58 -51.93 -0.29 3.59 16 16 C -0.14 -2.75 6.44 -24.23 -0.16 -2.90 16 17 C -0.13 -2.30 6.44 -24.23 -0.16 -2.46 16 18 C 0.13 2.39 5.04 -62.79 -0.32 2.08 16 19 H 0.09 1.54 8.14 -51.93 -0.42 1.12 16 20 N -0.59 -13.64 2.98 -145.80 -0.44 -14.08 16 21 C -0.22 -5.53 10.59 -15.06 -0.16 -5.69 16 22 H 0.08 1.88 7.83 -52.49 -0.41 1.47 16 23 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 24 N -0.92 -25.39 10.48 55.49 0.58 -24.81 16 25 Si 0.92 20.92 29.55 -169.99 -5.02 15.90 16 26 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 27 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 28 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 29 H 0.13 0.21 8.14 -51.92 -0.42 -0.21 16 30 H 0.13 0.19 8.14 -51.92 -0.42 -0.24 16 31 H 0.13 0.40 8.14 -51.92 -0.42 -0.03 16 32 H 0.13 0.41 8.14 -51.92 -0.42 -0.01 16 33 H 0.13 0.48 8.14 -51.92 -0.42 0.06 16 34 H 0.09 1.06 8.10 -51.93 -0.42 0.64 16 35 H 0.09 0.99 8.10 -51.93 -0.42 0.57 16 36 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 38 H 0.40 6.19 8.62 -40.82 -0.35 5.84 16 39 H 0.06 1.30 7.98 -51.93 -0.41 0.89 16 40 H 0.05 1.03 7.82 -51.93 -0.41 0.63 16 41 H 0.05 1.15 8.14 -51.93 -0.42 0.72 16 42 H 0.05 0.87 7.82 -51.93 -0.41 0.46 16 43 H 0.06 1.01 8.14 -51.92 -0.42 0.59 16 44 H 0.05 0.83 7.83 -51.93 -0.41 0.42 16 45 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 LS Contribution 375.56 15.07 5.66 5.66 Total: -1.00 -36.34 375.56 -9.92 -46.25 By element: Atomic # 1 Polarization: 13.72 SS G_CDS: -7.27 Total: 6.45 kcal Atomic # 6 Polarization: -5.67 SS G_CDS: -0.58 Total: -6.25 kcal Atomic # 7 Polarization: -50.60 SS G_CDS: -0.12 Total: -50.71 kcal Atomic # 8 Polarization: -32.35 SS G_CDS: -2.01 Total: -34.35 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Atomic # 16 Polarization: 17.63 SS G_CDS: -0.58 Total: 17.05 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -36.34 -9.92 -46.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001111132397.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.751 kcal (2) G-P(sol) polarization free energy of solvation -36.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.78 seconds