Wall clock time and date at job start Tue Mar 31 2020 05:55:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 O 1.42095 * 108.58372 * 2 1 4 4 O 1.42108 * 108.57676 * 228.97606 * 2 1 3 5 5 C 1.81396 * 101.92222 * 114.49070 * 2 1 3 6 6 C 1.53008 * 109.47207 * 179.97438 * 5 2 1 7 7 C 1.50703 * 109.47211 * 179.97438 * 6 5 2 8 8 O 1.21284 * 119.99786 * 0.02562 * 7 6 5 9 9 N 1.34774 * 119.99701 * 180.27708 * 7 6 5 10 10 C 1.46502 * 119.99689 * 179.72665 * 9 7 6 11 11 C 1.54181 * 111.61165 * 298.58309 * 10 9 7 12 12 C 1.56224 * 103.64761 * 260.32625 * 11 10 9 13 13 C 1.54850 * 103.17736 * 322.66031 * 12 11 10 14 14 C 1.54185 * 104.29761 * 37.76836 * 13 12 11 15 15 H 1.08999 * 112.25557 * 98.78673 * 14 13 12 16 16 C 1.53799 * 109.12411 * 223.08541 * 14 13 12 17 17 N 1.47215 * 106.35765 * 132.67197 * 16 14 13 18 18 C 1.36940 * 126.70207 * 148.74496 * 17 16 14 19 19 H 1.08001 * 119.99761 * 342.11579 * 18 17 16 20 20 C 1.38809 * 120.00411 * 162.11611 * 18 17 16 21 21 N 1.31619 * 120.00391 * 159.78081 * 20 18 17 22 22 Si 1.86800 * 119.99794 * 339.78424 * 20 18 17 23 23 H 1.48496 * 109.47501 * 84.68339 * 22 20 18 24 24 H 1.48504 * 109.47295 * 204.68733 * 22 20 18 25 25 H 1.48500 * 109.47282 * 324.68415 * 22 20 18 26 26 C 1.47217 * 106.59886 * 328.76038 * 17 16 14 27 27 H 1.09001 * 109.46665 * 305.51446 * 1 2 3 28 28 H 1.09000 * 109.46924 * 65.50426 * 1 2 3 29 29 H 1.08991 * 109.47164 * 185.51384 * 1 2 3 30 30 H 1.09001 * 109.47481 * 59.99940 * 5 2 1 31 31 H 1.08995 * 109.47175 * 299.99706 * 5 2 1 32 32 H 1.09001 * 109.46712 * 59.99760 * 6 5 2 33 33 H 1.08995 * 109.47050 * 300.00073 * 6 5 2 34 34 H 0.96993 * 120.00120 * 359.72077 * 9 7 6 35 35 H 1.08999 * 110.47068 * 20.30198 * 11 10 9 36 36 H 1.09010 * 110.46761 * 142.88657 * 11 10 9 37 37 H 1.09007 * 110.86441 * 204.05288 * 12 11 10 38 38 H 1.09003 * 110.38923 * 81.04666 * 12 11 10 39 39 H 1.09000 * 110.47157 * 279.06086 * 13 12 11 40 40 H 1.09000 * 110.46640 * 156.46595 * 13 12 11 41 41 H 1.09001 * 110.08118 * 13.44305 * 16 14 13 42 42 H 1.09008 * 110.12265 * 251.91738 * 16 14 13 43 43 H 0.97003 * 120.00145 * 180.02562 * 21 20 18 44 44 H 1.09000 * 110.08009 * 272.01064 * 26 17 16 45 45 H 1.09004 * 110.12513 * 150.48750 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2668 1.3469 0.0000 4 8 2.2667 -0.8842 -1.0163 5 6 2.1887 -0.7357 1.6151 6 6 3.7055 -0.8197 1.7978 7 6 4.0169 -1.4304 3.1399 8 8 3.1144 -1.7659 3.8775 9 7 5.2981 -1.5989 3.5226 10 6 5.6007 -2.1871 4.8298 11 6 5.0436 -1.3274 5.9821 12 6 6.2874 -0.5208 6.4750 13 6 7.4435 -1.5433 6.3497 14 6 7.1250 -2.3217 5.0574 15 1 7.6939 -1.9543 4.2033 16 6 7.3693 -3.8208 5.2990 17 7 6.1879 -4.5237 4.7721 18 6 6.1593 -5.7774 4.2220 19 1 7.0737 -6.2364 3.8763 20 6 4.9550 -6.4583 4.1088 21 7 4.8383 -7.4512 3.2527 22 14 3.4999 -5.9654 5.1713 23 1 2.7713 -4.8449 4.5242 24 1 2.5858 -7.1253 5.3279 25 1 3.9856 -5.5343 6.5068 26 6 5.0434 -3.6153 4.9517 27 1 -0.3633 0.5970 0.8365 28 1 -0.3633 0.4261 -0.9352 29 1 -0.3633 -1.0228 0.0987 30 1 1.7611 -1.7370 1.6664 31 1 1.7611 -0.1172 2.4042 32 1 4.1336 0.1815 1.7464 33 1 4.1328 -1.4384 1.0088 34 1 6.0198 -1.3310 2.9326 35 1 4.2519 -0.6714 5.6199 36 1 4.6747 -1.9624 6.7876 37 1 6.1605 -0.2061 7.5109 38 1 6.4616 0.3404 5.8298 39 1 7.4522 -2.2159 7.2074 40 1 8.3997 -1.0282 6.2584 41 1 7.4756 -4.0155 6.3662 42 1 8.2649 -4.1450 4.7688 43 1 3.9965 -7.9268 3.1733 44 1 4.6007 -3.7615 5.9370 45 1 4.2979 -3.7935 4.1767 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001111791437.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:28 Heat of formation + Delta-G solvation = -76.723311 kcal Electronic energy + Delta-G solvation = -27712.262503 eV Core-core repulsion = 23857.974616 eV Total energy + Delta-G solvation = -3854.287887 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 2.36 seconds Orbital eigenvalues (eV) -40.46783 -38.44024 -37.20595 -36.26636 -34.71910 -33.56261 -33.23793 -31.76660 -29.98131 -29.74757 -28.28676 -25.39550 -25.32601 -23.96325 -21.55308 -20.45054 -19.65766 -19.20585 -19.07474 -17.54761 -16.91897 -16.58396 -16.45611 -16.22877 -15.71239 -15.50570 -15.15463 -14.72548 -14.28492 -14.01933 -13.63545 -13.53732 -13.48753 -13.21158 -12.96396 -12.85393 -12.71199 -12.31527 -12.21721 -12.05299 -11.89828 -11.58524 -11.48261 -11.35970 -11.33284 -11.10419 -10.94330 -10.84678 -10.75757 -10.50942 -10.14604 -10.12420 -10.03710 -9.57322 -9.37908 -8.84879 -8.60687 -7.06869 -5.92777 -3.24586 -0.29665 2.45554 2.78535 3.16059 3.44755 3.50619 3.52736 3.54139 3.76139 4.24758 4.47039 4.48353 4.53049 4.58860 4.68519 4.73810 4.83624 4.97681 5.16693 5.21768 5.33078 5.35361 5.38454 5.51448 5.53879 5.59689 5.62904 5.69900 5.79527 5.84892 6.00281 6.08734 6.20816 6.29791 6.39173 6.48358 6.53644 6.68862 6.74565 6.98899 7.65497 7.72857 8.32000 8.41120 8.82210 9.69623 10.20043 11.22901 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.011685 B = 0.004292 C = 0.003512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2395.686752 B = 6521.459005 C = 7971.192701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.655 4.655 2 S 2.421 3.579 3 O -0.942 6.942 4 O -0.936 6.936 5 C -0.594 4.594 6 C -0.134 4.134 7 C 0.519 3.481 8 O -0.531 6.531 9 N -0.706 5.706 10 C 0.162 3.838 11 C -0.120 4.120 12 C -0.123 4.123 13 C -0.115 4.115 14 C -0.104 4.104 15 H 0.084 0.916 16 C 0.136 3.864 17 N -0.606 5.606 18 C -0.242 4.242 19 H 0.094 0.906 20 C 0.024 3.976 21 N -0.910 5.910 22 Si 0.876 3.124 23 H -0.277 1.277 24 H -0.303 1.303 25 H -0.276 1.276 26 C 0.110 3.890 27 H 0.128 0.872 28 H 0.129 0.871 29 H 0.130 0.870 30 H 0.142 0.858 31 H 0.139 0.861 32 H 0.108 0.892 33 H 0.111 0.889 34 H 0.399 0.601 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.064 0.936 38 H 0.062 0.938 39 H 0.073 0.927 40 H 0.066 0.934 41 H 0.029 0.971 42 H 0.052 0.948 43 H 0.263 0.737 44 H 0.034 0.966 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.331 19.285 -1.243 19.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.805 4.805 2 S 2.604 3.396 3 O -0.939 6.939 4 O -0.933 6.933 5 C -0.723 4.723 6 C -0.175 4.175 7 C 0.304 3.696 8 O -0.407 6.407 9 N -0.356 5.356 10 C 0.075 3.925 11 C -0.159 4.159 12 C -0.161 4.161 13 C -0.153 4.153 14 C -0.124 4.124 15 H 0.102 0.898 16 C 0.010 3.990 17 N -0.331 5.331 18 C -0.368 4.368 19 H 0.111 0.889 20 C -0.175 4.175 21 N -0.554 5.554 22 Si 0.706 3.294 23 H -0.203 1.203 24 H -0.231 1.231 25 H -0.201 1.201 26 C -0.017 4.017 27 H 0.147 0.853 28 H 0.147 0.853 29 H 0.149 0.851 30 H 0.160 0.840 31 H 0.157 0.843 32 H 0.126 0.874 33 H 0.130 0.870 34 H 0.234 0.766 35 H 0.093 0.907 36 H 0.092 0.908 37 H 0.082 0.918 38 H 0.081 0.919 39 H 0.091 0.909 40 H 0.084 0.916 41 H 0.046 0.954 42 H 0.070 0.930 43 H 0.073 0.927 44 H 0.051 0.949 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -3.512 19.065 -1.493 19.443 hybrid contribution -1.244 -0.130 0.897 1.539 sum -4.756 18.935 -0.596 19.533 Atomic orbital electron populations 1.30243 1.26678 1.11870 1.11669 1.07802 0.78445 0.75734 0.77658 1.93592 1.79124 1.34602 1.86608 1.93627 1.78933 1.66836 1.53943 1.30127 1.04114 1.15379 1.22680 1.21352 0.93403 1.04220 0.98546 1.20117 0.83055 0.78709 0.87749 1.90719 1.45557 1.49904 1.54521 1.45907 1.07155 1.63380 1.19198 1.21653 0.94910 0.94091 0.81885 1.22923 0.97319 0.98590 0.97092 1.22749 0.94995 0.97723 1.00590 1.22446 0.97976 0.97572 0.97273 1.22763 0.93633 0.98080 0.97923 0.89814 1.21524 0.91828 0.88756 0.96876 1.44884 1.02805 1.14556 1.70835 1.18642 0.96139 0.89504 1.32559 0.88863 1.24945 0.97299 0.96481 0.98763 1.69814 1.26066 1.24610 1.34902 0.87075 0.83415 0.76526 0.82370 1.20320 1.23126 1.20139 1.22158 0.92235 0.87327 0.99949 0.85286 0.85287 0.85094 0.83977 0.84272 0.87408 0.87030 0.76634 0.90732 0.90819 0.91763 0.91900 0.90885 0.91571 0.95372 0.92991 0.92735 0.94877 0.90920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 41. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -3.40 10.62 101.05 1.07 -2.33 16 2 S 2.42 20.44 5.36 -107.50 -0.58 19.86 16 3 O -0.94 -10.68 18.10 -57.83 -1.05 -11.73 16 4 O -0.94 -11.78 18.10 -57.83 -1.05 -12.83 16 5 C -0.59 -5.53 5.09 37.16 0.19 -5.34 16 6 C -0.13 -1.50 5.71 -27.88 -0.16 -1.65 16 7 C 0.52 8.04 6.81 -10.99 -0.07 7.96 16 8 O -0.53 -10.11 13.48 5.55 0.07 -10.03 16 9 N -0.71 -10.51 5.23 -45.83 -0.24 -10.75 16 10 C 0.16 2.75 0.94 -129.89 -0.12 2.63 16 11 C -0.12 -1.83 5.75 -24.38 -0.14 -1.97 16 12 C -0.12 -1.45 6.92 -24.03 -0.17 -1.61 16 13 C -0.11 -1.40 6.38 -25.14 -0.16 -1.56 16 14 C -0.10 -1.56 3.67 -88.69 -0.33 -1.88 16 15 H 0.08 1.10 7.69 -51.93 -0.40 0.70 16 16 C 0.14 2.60 6.78 -3.24 -0.02 2.58 16 17 N -0.61 -14.72 3.21 -171.10 -0.55 -15.27 16 18 C -0.24 -6.93 10.67 -15.06 -0.16 -7.09 16 19 H 0.09 2.80 8.06 -52.49 -0.42 2.38 16 20 C 0.02 0.71 5.45 -17.43 -0.09 0.61 16 21 N -0.91 -28.57 13.97 55.49 0.78 -27.80 16 22 Si 0.88 23.70 24.36 -169.99 -4.14 19.56 16 23 H -0.28 -7.52 6.37 56.52 0.36 -7.16 16 24 H -0.30 -8.23 7.11 56.52 0.40 -7.83 16 25 H -0.28 -7.35 6.49 56.52 0.37 -6.98 16 26 C 0.11 2.49 3.51 -3.24 -0.01 2.48 16 27 H 0.13 0.45 8.14 -51.92 -0.42 0.02 16 28 H 0.13 0.57 8.14 -51.92 -0.42 0.14 16 29 H 0.13 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.14 1.36 8.10 -51.92 -0.42 0.94 16 31 H 0.14 1.07 8.10 -51.93 -0.42 0.65 16 32 H 0.11 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.11 1.17 8.14 -51.93 -0.42 0.74 16 34 H 0.40 4.67 8.28 -40.82 -0.34 4.33 16 35 H 0.07 1.15 6.69 -51.93 -0.35 0.81 16 36 H 0.07 1.21 7.18 -51.92 -0.37 0.84 16 37 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 38 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.07 0.93 7.17 -51.93 -0.37 0.55 16 40 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 41 H 0.03 0.53 7.12 -51.93 -0.37 0.16 16 42 H 0.05 0.96 8.14 -51.92 -0.42 0.54 16 43 H 0.26 7.88 8.31 -40.82 -0.34 7.54 16 44 H 0.03 0.81 5.15 -51.93 -0.27 0.54 16 45 H 0.07 1.87 4.37 -51.93 -0.23 1.65 16 LS Contribution 359.56 15.07 5.42 5.42 Total: -1.00 -40.36 359.56 -8.48 -48.84 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: -6.97 Total: 1.92 kcal Atomic # 6 Polarization: -7.00 SS G_CDS: -0.17 Total: -7.18 kcal Atomic # 7 Polarization: -53.80 SS G_CDS: -0.01 Total: -53.81 kcal Atomic # 8 Polarization: -32.58 SS G_CDS: -2.02 Total: -34.59 kcal Atomic # 14 Polarization: 23.70 SS G_CDS: -4.14 Total: 19.56 kcal Atomic # 16 Polarization: 20.44 SS G_CDS: -0.58 Total: 19.86 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -40.36 -8.48 -48.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001111791437.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.887 kcal (2) G-P(sol) polarization free energy of solvation -40.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.36 seconds