Wall clock time and date at job start Tue Mar 31 2020 05:51:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 O 1.42095 * 108.58343 * 2 1 4 4 O 1.42098 * 108.57552 * 228.97141 * 2 1 3 5 5 C 1.81409 * 101.91994 * 114.48832 * 2 1 3 6 6 C 1.52999 * 109.46821 * 180.02562 * 5 2 1 7 7 C 1.53006 * 109.46626 * 179.97438 * 6 5 2 8 8 C 1.50699 * 109.46866 * 179.97438 * 7 6 5 9 9 O 1.21282 * 120.00041 * 359.97438 * 8 7 6 10 10 N 1.34779 * 120.00037 * 180.02562 * 8 7 6 11 11 C 1.47337 * 125.52164 * 359.68754 * 10 8 7 12 12 C 1.55164 * 104.79571 * 156.68887 * 11 10 8 13 13 C 1.54786 * 101.35563 * 37.54471 * 12 11 10 14 14 H 1.08995 * 113.40544 * 85.63698 * 13 12 11 15 15 C 1.53518 * 109.68671 * 212.75625 * 13 12 11 16 16 N 1.46647 * 107.04858 * 84.09087 * 15 13 12 17 17 C 1.36942 * 125.28567 * 197.35883 * 16 15 13 18 18 H 1.07992 * 119.99791 * 0.04251 * 17 16 15 19 19 C 1.38815 * 119.99636 * 180.02562 * 17 16 15 20 20 N 1.31614 * 120.00107 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 119.99648 * 179.97438 * 19 17 16 22 22 H 1.48494 * 109.46869 * 90.00158 * 21 19 17 23 23 H 1.48491 * 109.46913 * 210.00132 * 21 19 17 24 24 H 1.48502 * 109.47174 * 330.00240 * 21 19 17 25 25 C 1.46489 * 109.42615 * 17.37546 * 16 15 13 26 26 C 1.47253 * 125.52470 * 180.02562 * 10 8 7 27 27 H 1.09002 * 111.94505 * 55.56752 * 26 10 8 28 28 H 1.09001 * 109.46587 * 305.51673 * 1 2 3 29 29 H 1.09001 * 109.46751 * 65.51468 * 1 2 3 30 30 H 1.08995 * 109.47102 * 185.51159 * 1 2 3 31 31 H 1.08993 * 109.47018 * 59.99473 * 5 2 1 32 32 H 1.09000 * 109.46792 * 299.99763 * 5 2 1 33 33 H 1.08993 * 109.47839 * 59.99872 * 6 5 2 34 34 H 1.09000 * 109.47160 * 299.99434 * 6 5 2 35 35 H 1.09000 * 109.47050 * 299.99699 * 7 6 5 36 36 H 1.09001 * 109.46801 * 59.99811 * 7 6 5 37 37 H 1.08999 * 110.36025 * 275.63814 * 11 10 8 38 38 H 1.08999 * 110.35610 * 37.92736 * 11 10 8 39 39 H 1.09000 * 111.21818 * 279.47271 * 12 11 10 40 40 H 1.09004 * 110.93014 * 155.49039 * 12 11 10 41 41 H 1.09000 * 109.91867 * 324.73566 * 15 13 12 42 42 H 1.09000 * 110.07887 * 203.52699 * 15 13 12 43 43 H 0.97007 * 119.99533 * 180.02562 * 20 19 17 44 44 H 1.09009 * 109.71622 * 238.32058 * 25 16 15 45 45 H 1.09004 * 109.67541 * 117.75060 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2669 1.3469 0.0000 4 8 2.2667 -0.8842 -1.0161 5 6 2.1887 -0.7357 1.6153 6 6 3.7055 -0.8185 1.7985 7 6 4.0214 -1.4384 3.1612 8 6 5.5154 -1.5205 3.3414 9 8 6.2545 -1.1228 2.4659 10 7 6.0300 -2.0368 4.4750 11 6 5.2487 -2.5486 5.6144 12 6 6.2035 -3.5339 6.3390 13 6 7.5612 -2.8048 6.1939 14 1 7.7434 -2.0690 6.9771 15 6 8.6917 -3.8363 6.0718 16 7 8.7631 -4.2310 4.6613 17 6 9.3894 -5.3514 4.1841 18 1 9.8828 -6.0266 4.8675 19 6 9.3899 -5.6193 2.8220 20 7 8.7887 -4.7963 1.9893 21 14 10.2449 -7.1473 2.1710 22 1 9.2828 -8.2779 2.1409 23 1 10.7459 -6.8868 0.7977 24 1 11.3858 -7.4916 3.0571 25 6 8.0606 -3.2405 3.8420 26 6 7.4644 -2.1744 4.7783 27 1 7.9902 -1.2227 4.7014 28 1 -0.3632 0.5970 0.8365 29 1 -0.3633 0.4259 -0.9353 30 1 -0.3633 -1.0229 0.0987 31 1 1.7610 -1.7369 1.6665 32 1 1.7610 -0.1171 2.4043 33 1 4.1329 0.1829 1.7474 34 1 4.1335 -1.4369 1.0095 35 1 3.5934 -0.8197 3.9499 36 1 3.5940 -2.4398 3.2126 37 1 4.9676 -1.7317 6.2790 38 1 4.3610 -3.0730 5.2605 39 1 6.2243 -4.5024 5.8394 40 1 5.9281 -3.6425 7.3881 41 1 8.4692 -4.7060 6.6901 42 1 9.6379 -3.3928 6.3816 43 1 8.7888 -4.9838 1.0375 44 1 7.2615 -3.7264 3.2820 45 1 8.7615 -2.7722 3.1509 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001189398939.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:52 Heat of formation + Delta-G solvation = -71.641601 kcal Electronic energy + Delta-G solvation = -26911.638436 eV Core-core repulsion = 23057.570908 eV Total energy + Delta-G solvation = -3854.067528 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 1.80 seconds Orbital eigenvalues (eV) -40.09768 -38.01654 -37.17351 -36.22221 -34.88670 -34.66032 -32.23926 -30.63089 -30.07387 -29.23389 -28.02208 -26.52340 -24.48770 -23.05359 -22.03034 -20.40593 -19.57145 -19.10972 -18.56280 -17.22161 -16.79845 -16.61301 -16.54061 -16.05043 -15.77044 -15.32035 -14.86189 -14.49137 -14.07782 -13.74768 -13.60648 -13.55061 -13.43000 -12.98175 -12.94018 -12.57289 -12.35507 -12.25807 -12.17462 -12.06693 -11.98419 -11.70204 -11.42277 -11.28250 -11.16248 -11.03884 -10.95832 -10.76678 -10.72726 -10.49853 -10.18187 -10.01650 -9.84265 -9.67828 -9.37254 -8.54719 -8.15953 -6.77391 -5.63268 -3.00359 -0.29697 2.49060 3.03970 3.24677 3.43172 3.46840 3.48062 3.51346 3.72280 4.29676 4.35593 4.42118 4.53693 4.69431 4.73789 4.81700 4.84906 5.08940 5.18140 5.23380 5.26376 5.30327 5.43351 5.47944 5.56160 5.61557 5.72939 5.82382 5.84650 5.94028 6.02524 6.06526 6.21383 6.39205 6.60322 6.61716 6.65564 6.87432 7.62546 7.66758 7.94789 8.00353 8.34183 8.60478 9.27729 9.88547 10.51351 11.45876 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.014161 B = 0.003013 C = 0.002621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1976.834868 B = 9291.212444 C =10678.515324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.659 4.659 2 S 2.422 3.578 3 O -0.938 6.938 4 O -0.934 6.934 5 C -0.609 4.609 6 C -0.099 4.099 7 C -0.126 4.126 8 C 0.521 3.479 9 O -0.527 6.527 10 N -0.609 5.609 11 C 0.102 3.898 12 C -0.120 4.120 13 C -0.111 4.111 14 H 0.087 0.913 15 C 0.145 3.855 16 N -0.602 5.602 17 C -0.236 4.236 18 H 0.078 0.922 19 C -0.006 4.006 20 N -0.913 5.913 21 Si 0.911 3.089 22 H -0.289 1.289 23 H -0.290 1.290 24 H -0.282 1.282 25 C 0.179 3.821 26 C 0.113 3.887 27 H 0.080 0.920 28 H 0.126 0.874 29 H 0.128 0.872 30 H 0.127 0.873 31 H 0.133 0.867 32 H 0.132 0.868 33 H 0.088 0.912 34 H 0.092 0.908 35 H 0.091 0.909 36 H 0.094 0.906 37 H 0.063 0.937 38 H 0.070 0.930 39 H 0.086 0.914 40 H 0.075 0.925 41 H 0.038 0.962 42 H 0.016 0.984 43 H 0.253 0.747 44 H 0.056 0.944 45 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.075 8.876 6.415 22.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.808 4.808 2 S 2.604 3.396 3 O -0.935 6.935 4 O -0.932 6.932 5 C -0.739 4.739 6 C -0.137 4.137 7 C -0.167 4.167 8 C 0.309 3.691 9 O -0.403 6.403 10 N -0.344 5.344 11 C -0.021 4.021 12 C -0.158 4.158 13 C -0.130 4.130 14 H 0.106 0.894 15 C 0.018 3.982 16 N -0.329 5.329 17 C -0.364 4.364 18 H 0.096 0.904 19 C -0.203 4.203 20 N -0.560 5.560 21 Si 0.741 3.259 22 H -0.217 1.217 23 H -0.216 1.216 24 H -0.207 1.207 25 C 0.054 3.946 26 C 0.010 3.990 27 H 0.097 0.903 28 H 0.145 0.855 29 H 0.146 0.854 30 H 0.146 0.854 31 H 0.152 0.848 32 H 0.150 0.850 33 H 0.107 0.893 34 H 0.110 0.890 35 H 0.110 0.890 36 H 0.113 0.887 37 H 0.081 0.919 38 H 0.088 0.912 39 H 0.105 0.895 40 H 0.094 0.906 41 H 0.056 0.944 42 H 0.034 0.966 43 H 0.064 0.936 44 H 0.074 0.926 45 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -19.114 9.339 4.961 21.844 hybrid contribution -0.323 -1.145 0.344 1.239 sum -19.437 8.193 5.305 21.750 Atomic orbital electron populations 1.30312 1.27440 1.11425 1.11618 1.07851 0.78006 0.75908 0.77876 1.93606 1.78806 1.34597 1.86541 1.93629 1.78676 1.66914 1.53934 1.30353 1.06518 1.13942 1.23039 1.21075 0.89467 1.04201 0.98993 1.21564 0.93660 1.03213 0.98251 1.20126 0.90309 0.77776 0.80879 1.90764 1.61417 1.47781 1.40314 1.48603 1.07730 1.61467 1.16566 1.22323 0.95154 0.96558 0.88075 1.22779 0.93845 0.99186 1.00015 1.22938 0.96316 0.97754 0.96013 0.89444 1.21060 0.94096 0.94506 0.88518 1.44143 1.63769 1.25179 0.99858 1.18991 1.27841 0.98374 0.91164 0.90419 1.24857 1.00635 0.98748 0.96031 1.70005 1.47013 1.36570 1.02362 0.86145 0.79008 0.82422 0.78302 1.21669 1.21643 1.20722 1.21279 0.96024 0.87040 0.90298 1.22891 0.80682 0.99809 0.95656 0.90250 0.85490 0.85383 0.85401 0.84841 0.85009 0.89328 0.88958 0.89040 0.88738 0.91912 0.91201 0.89494 0.90608 0.94435 0.96621 0.93619 0.92616 0.93782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -2.46 10.62 101.05 1.07 -1.39 16 2 S 2.42 19.63 5.36 -107.50 -0.58 19.05 16 3 O -0.94 -11.41 18.10 -57.83 -1.05 -12.46 16 4 O -0.93 -12.06 18.10 -57.83 -1.05 -13.11 16 5 C -0.61 -3.94 5.81 37.16 0.22 -3.73 16 6 C -0.10 -1.15 4.51 -26.73 -0.12 -1.27 16 7 C -0.13 -1.46 4.70 -27.88 -0.13 -1.59 16 8 C 0.52 9.18 7.56 -10.99 -0.08 9.09 16 9 O -0.53 -11.81 16.07 5.56 0.09 -11.72 16 10 N -0.61 -10.32 2.83 -161.66 -0.46 -10.77 16 11 C 0.10 1.26 6.67 -2.44 -0.02 1.25 16 12 C -0.12 -1.66 6.34 -24.65 -0.16 -1.82 16 13 C -0.11 -1.79 3.97 -88.21 -0.35 -2.14 16 14 H 0.09 1.18 8.14 -51.93 -0.42 0.75 16 15 C 0.14 2.91 6.50 -3.69 -0.02 2.88 16 16 N -0.60 -15.50 3.37 -172.25 -0.58 -16.08 16 17 C -0.24 -6.64 10.25 -15.06 -0.15 -6.79 16 18 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 19 C -0.01 -0.16 5.48 -17.43 -0.10 -0.26 16 20 N -0.91 -28.07 10.23 55.49 0.57 -27.50 16 21 Si 0.91 22.61 29.55 -169.99 -5.02 17.58 16 22 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 23 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 24 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 25 C 0.18 4.57 4.63 -3.58 -0.02 4.56 16 26 C 0.11 2.22 3.81 -65.85 -0.25 1.97 16 27 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 28 H 0.13 0.22 8.14 -51.92 -0.42 -0.21 16 29 H 0.13 0.46 8.14 -51.92 -0.42 0.04 16 30 H 0.13 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.13 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.13 0.44 8.14 -51.92 -0.42 0.01 16 33 H 0.09 1.11 8.10 -51.93 -0.42 0.69 16 34 H 0.09 1.28 8.10 -51.93 -0.42 0.86 16 35 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.09 0.95 7.85 -51.93 -0.41 0.54 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.07 0.73 7.49 -51.93 -0.39 0.35 16 39 H 0.09 1.47 7.93 -51.93 -0.41 1.06 16 40 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.04 0.72 7.95 -51.93 -0.41 0.31 16 42 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 43 H 0.25 7.65 8.31 -40.82 -0.34 7.31 16 44 H 0.06 1.61 6.89 -51.92 -0.36 1.25 16 45 H 0.04 1.32 7.51 -51.93 -0.39 0.93 16 LS Contribution 373.30 15.07 5.63 5.63 Total: -1.00 -41.17 373.30 -9.96 -51.13 By element: Atomic # 1 Polarization: 4.90 SS G_CDS: -7.41 Total: -2.51 kcal Atomic # 6 Polarization: 0.87 SS G_CDS: -0.11 Total: 0.76 kcal Atomic # 7 Polarization: -53.89 SS G_CDS: -0.47 Total: -54.36 kcal Atomic # 8 Polarization: -35.28 SS G_CDS: -2.00 Total: -37.29 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -5.02 Total: 17.58 kcal Atomic # 16 Polarization: 19.63 SS G_CDS: -0.58 Total: 19.05 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -41.17 -9.96 -51.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189398939.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.510 kcal (2) G-P(sol) polarization free energy of solvation -41.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.80 seconds