Wall clock time and date at job start Tue Mar 31 2020 05:05:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21275 * 119.99827 * 2 1 4 4 N 1.34773 * 119.99949 * 179.97438 * 2 1 3 5 5 C 1.46966 * 120.64292 * 333.48941 * 4 2 1 6 6 C 1.53153 * 108.75871 * 233.47736 * 5 4 2 7 7 C 1.53038 * 109.35859 * 305.31255 * 6 5 4 8 8 C 1.53064 * 109.52848 * 61.39576 * 7 6 5 9 9 C 1.46792 * 120.64569 * 153.51733 * 4 2 1 10 10 C 1.52892 * 109.54756 * 6.54161 * 9 4 2 11 11 C 1.53066 * 109.55586 * 301.06255 * 10 9 4 12 12 C 1.53195 * 109.31833 * 298.83132 * 11 10 9 13 13 N 1.46924 * 108.79940 * 54.67420 * 12 11 10 14 14 S 1.65602 * 120.63876 * 126.30883 * 13 12 11 15 15 O 1.42101 * 106.39735 * 203.53521 * 14 13 12 16 16 O 1.42101 * 106.40395 * 336.45578 * 14 13 12 17 17 C 1.76194 * 107.21887 * 89.99954 * 14 13 12 18 18 H 1.08000 * 120.00136 * 0.02562 * 17 14 13 19 19 C 1.37884 * 119.99992 * 180.02562 * 17 14 13 20 20 N 1.31514 * 119.99702 * 180.02562 * 19 17 14 21 21 Si 1.86797 * 119.99795 * 359.97438 * 19 17 14 22 22 H 1.48497 * 109.46975 * 90.00056 * 21 19 17 23 23 H 1.48507 * 109.46912 * 210.00318 * 21 19 17 24 24 H 1.48497 * 109.47204 * 329.99901 * 21 19 17 25 25 C 1.46957 * 118.71788 * 306.32719 * 13 12 11 26 26 H 1.09001 * 109.47420 * 174.78062 * 1 2 3 27 27 H 1.08992 * 109.47697 * 294.78090 * 1 2 3 28 28 H 1.09001 * 109.47185 * 54.78690 * 1 2 3 29 29 H 1.09000 * 109.58521 * 353.26850 * 5 4 2 30 30 H 1.09000 * 109.58541 * 113.54982 * 5 4 2 31 31 H 1.08993 * 109.47730 * 185.35336 * 6 5 4 32 32 H 1.09010 * 109.49717 * 65.28310 * 6 5 4 33 33 H 1.08993 * 109.45780 * 301.38178 * 7 6 5 34 34 H 1.08999 * 109.46008 * 181.40252 * 7 6 5 35 35 H 1.09000 * 109.50341 * 58.77654 * 8 7 6 36 36 H 1.09005 * 109.50227 * 178.84514 * 8 7 6 37 37 H 1.09002 * 109.45994 * 61.08761 * 10 9 4 38 38 H 1.09001 * 109.46199 * 181.03449 * 10 9 4 39 39 H 1.08996 * 109.49073 * 58.78311 * 11 10 9 40 40 H 1.08995 * 109.49954 * 178.84725 * 11 10 9 41 41 H 1.08999 * 109.57827 * 174.46775 * 12 11 10 42 42 H 1.09002 * 109.57909 * 294.87448 * 12 11 10 43 43 H 0.96999 * 119.99191 * 179.97438 * 20 19 17 44 44 H 1.08999 * 109.58827 * 293.68815 * 25 13 12 45 45 H 1.08997 * 109.58757 * 173.25852 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0503 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 1.5755 -2.3814 0.5655 6 6 2.5353 -2.9740 1.6014 7 6 3.9041 -3.1983 0.9548 8 6 4.4726 -1.8579 0.4824 9 6 3.5339 -1.2502 -0.5626 10 6 4.0187 0.1504 -0.9379 11 6 3.0580 0.7693 -1.9562 12 6 3.0356 -0.0940 -3.2216 13 7 2.7070 -1.4759 -2.8462 14 16 1.4526 -2.2733 -3.5762 15 8 1.0444 -3.2915 -2.6729 16 8 0.5724 -1.2718 -4.0678 17 6 2.1092 -3.0958 -4.9893 18 1 3.1603 -3.0122 -5.2229 19 6 1.2811 -3.8464 -5.7968 20 7 1.7714 -4.4608 -6.8512 21 14 -0.5367 -3.9917 -5.3923 22 1 -1.2826 -2.8986 -6.0660 23 1 -1.0459 -5.3038 -5.8662 24 1 -0.7267 -3.8884 -3.9232 25 6 3.5128 -2.1368 -1.8100 26 1 -0.3634 -1.0234 -0.0935 27 1 -0.3634 0.4307 0.9329 28 1 -0.3633 0.5926 -0.8396 29 1 0.6299 -2.1289 1.0454 30 1 1.3996 -3.1059 -0.2297 31 1 2.1417 -3.9255 1.9589 32 1 2.6374 -2.2843 2.4393 33 1 3.7974 -3.8683 0.1018 34 1 4.5815 -3.6432 1.6837 35 1 4.5594 -1.1799 1.3314 36 1 5.4565 -2.0154 0.0404 37 1 4.0525 0.7744 -0.0448 38 1 5.0160 0.0851 -1.3728 39 1 2.0561 0.8155 -1.5296 40 1 3.3931 1.7755 -2.2077 41 1 2.2813 0.2867 -3.9102 42 1 4.0152 -0.0680 -3.6989 43 1 1.1888 -4.9891 -7.4191 44 1 4.5303 -2.2796 -2.1741 45 1 3.0714 -3.1027 -1.5645 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192958713.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:22 Heat of formation + Delta-G solvation = -62.952804 kcal Electronic energy + Delta-G solvation = -30022.157678 eV Core-core repulsion = 26168.466925 eV Total energy + Delta-G solvation = -3853.690753 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.35351 -37.88833 -36.38900 -35.67303 -34.44766 -33.15104 -33.02151 -32.23324 -30.89227 -29.31065 -27.10657 -26.39989 -24.45810 -24.17035 -22.43023 -21.00889 -20.37107 -18.77450 -18.30802 -17.35983 -16.84735 -16.80431 -15.87115 -15.53281 -15.21997 -14.88601 -14.45038 -14.31383 -13.90267 -13.82108 -13.60436 -13.33637 -13.27694 -13.09393 -12.98981 -12.75680 -12.49672 -12.30319 -12.07499 -11.92278 -11.57577 -11.49434 -11.42500 -11.22433 -10.90399 -10.84762 -10.63603 -10.58606 -10.48769 -10.27850 -10.02496 -9.85543 -9.51181 -9.23712 -9.20775 -9.08913 -8.55765 -7.78700 -6.82220 -5.35400 2.01407 2.61815 3.03442 3.14081 3.16218 3.21663 3.91865 4.16860 4.56301 4.61683 4.76957 4.81558 4.96699 5.03468 5.14214 5.23707 5.34224 5.36712 5.46958 5.49153 5.50259 5.54061 5.60161 5.75977 5.83813 5.85298 5.93229 5.94879 5.98458 6.00501 6.02534 6.04151 6.12136 6.14965 6.23777 6.35234 6.46003 6.56041 6.76712 6.83259 6.88245 7.41699 7.47059 7.63844 8.20823 8.24816 8.68930 10.30511 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.016527 B = 0.005780 C = 0.005587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1693.792273 B = 4843.242219 C = 5010.586107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.511 3.489 3 O -0.513 6.513 4 N -0.606 5.606 5 C 0.096 3.904 6 C -0.129 4.129 7 C -0.125 4.125 8 C -0.120 4.120 9 C 0.166 3.834 10 C -0.099 4.099 11 C -0.163 4.163 12 C 0.116 3.884 13 N -0.996 5.996 14 S 2.678 3.322 15 O -1.006 7.006 16 O -1.010 7.010 17 C -1.019 5.019 18 H 0.120 0.880 19 C 0.152 3.848 20 N -0.824 5.824 21 Si 0.801 3.199 22 H -0.247 1.247 23 H -0.255 1.255 24 H -0.219 1.219 25 C 0.119 3.881 26 H 0.080 0.920 27 H 0.089 0.911 28 H 0.097 0.903 29 H 0.081 0.919 30 H 0.093 0.907 31 H 0.075 0.925 32 H 0.062 0.938 33 H 0.072 0.928 34 H 0.064 0.936 35 H 0.068 0.932 36 H 0.074 0.926 37 H 0.084 0.916 38 H 0.055 0.945 39 H 0.114 0.886 40 H 0.063 0.937 41 H 0.088 0.912 42 H 0.054 0.946 43 H 0.280 0.720 44 H 0.070 0.930 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.690 4.054 15.502 16.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C 0.302 3.698 3 O -0.392 6.392 4 N -0.340 5.340 5 C -0.027 4.027 6 C -0.167 4.167 7 C -0.163 4.163 8 C -0.159 4.159 9 C 0.080 3.920 10 C -0.137 4.137 11 C -0.201 4.201 12 C -0.010 4.010 13 N -0.831 5.831 14 S 2.781 3.219 15 O -0.997 6.997 16 O -1.000 7.000 17 C -1.153 5.153 18 H 0.138 0.862 19 C -0.067 4.067 20 N -0.453 5.453 21 Si 0.621 3.379 22 H -0.171 1.171 23 H -0.179 1.179 24 H -0.141 1.141 25 C -0.008 4.008 26 H 0.099 0.901 27 H 0.108 0.892 28 H 0.115 0.885 29 H 0.099 0.901 30 H 0.111 0.889 31 H 0.093 0.907 32 H 0.081 0.919 33 H 0.091 0.909 34 H 0.083 0.917 35 H 0.086 0.914 36 H 0.093 0.907 37 H 0.102 0.898 38 H 0.074 0.926 39 H 0.131 0.869 40 H 0.081 0.919 41 H 0.107 0.893 42 H 0.073 0.927 43 H 0.091 0.909 44 H 0.088 0.912 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 2.098 4.511 15.644 16.416 hybrid contribution -0.126 -0.530 -0.705 0.891 sum 1.972 3.981 14.939 15.586 Atomic orbital electron populations 1.22121 0.92758 1.04934 1.04821 1.20305 0.90173 0.83065 0.76211 1.90644 1.70238 1.32482 1.45792 1.47783 1.16324 1.09181 1.60730 1.21918 0.95909 0.87572 0.97288 1.21855 0.95903 1.01015 0.97971 1.21592 0.96340 0.97343 1.00996 1.21884 0.98449 0.97010 0.98590 1.20858 0.81667 0.97260 0.92255 1.21710 0.97846 0.93672 1.00433 1.23121 1.04577 0.97815 0.94603 1.21459 1.01106 0.81140 0.97299 1.57538 1.51549 1.22656 1.51402 1.01324 0.72116 0.73187 0.75280 1.93403 1.81044 1.58381 1.66835 1.93390 1.63760 1.61082 1.81809 1.30611 1.08341 1.46181 1.30144 0.86242 1.24454 0.98836 0.90819 0.92611 1.69997 1.37188 1.25690 1.12393 0.87878 0.84976 0.80914 0.84152 1.17078 1.17882 1.14071 1.21641 0.96527 0.96165 0.86506 0.90111 0.89201 0.88471 0.90079 0.88923 0.90686 0.91912 0.90897 0.91725 0.91370 0.90719 0.89778 0.92622 0.86925 0.91877 0.89320 0.92738 0.90931 0.91162 0.88480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.38 9.72 36.00 0.35 -2.03 16 2 C 0.51 7.74 5.47 -10.99 -0.06 7.68 16 3 O -0.51 -8.54 11.29 5.56 0.06 -8.48 16 4 N -0.61 -8.73 2.60 -158.18 -0.41 -9.14 16 5 C 0.10 1.22 5.45 -3.71 -0.02 1.20 16 6 C -0.13 -1.31 6.07 -26.63 -0.16 -1.47 16 7 C -0.13 -1.29 5.68 -26.68 -0.15 -1.45 16 8 C -0.12 -1.35 4.85 -26.67 -0.13 -1.48 16 9 C 0.17 2.36 0.67 -131.66 -0.09 2.27 16 10 C -0.10 -1.44 4.16 -26.75 -0.11 -1.55 16 11 C -0.16 -2.67 4.78 -26.60 -0.13 -2.80 16 12 C 0.12 2.10 6.47 -3.71 -0.02 2.08 16 13 N -1.00 -19.76 3.21 -113.58 -0.36 -20.13 16 14 S 2.68 66.20 4.23 -107.50 -0.45 65.74 16 15 O -1.01 -25.00 13.60 -57.17 -0.78 -25.78 16 16 O -1.01 -26.87 15.42 -57.17 -0.88 -27.75 16 17 C -1.02 -28.69 10.29 30.60 0.31 -28.38 16 18 H 0.12 3.44 8.06 -52.49 -0.42 3.02 16 19 C 0.15 4.39 5.47 -17.82 -0.10 4.29 16 20 N -0.82 -23.90 13.96 55.43 0.77 -23.12 16 21 Si 0.80 20.43 26.54 -169.99 -4.51 15.92 16 22 H -0.25 -6.21 7.11 56.52 0.40 -5.80 16 23 H -0.25 -5.95 7.11 56.52 0.40 -5.55 16 24 H -0.22 -5.55 5.61 56.52 0.32 -5.23 16 25 C 0.12 1.97 4.83 -3.77 -0.02 1.95 16 26 H 0.08 1.00 6.37 -51.93 -0.33 0.67 16 27 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.10 1.29 8.14 -51.93 -0.42 0.86 16 29 H 0.08 0.87 6.35 -51.93 -0.33 0.54 16 30 H 0.09 1.41 6.31 -51.93 -0.33 1.09 16 31 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.06 0.60 8.14 -51.92 -0.42 0.18 16 33 H 0.07 0.82 6.64 -51.93 -0.34 0.48 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.08 1.27 6.58 -51.93 -0.34 0.93 16 38 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.11 2.01 3.49 -57.63 -0.20 1.81 16 40 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.09 1.72 6.92 -51.93 -0.36 1.37 16 42 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 43 H 0.28 7.36 8.31 -40.82 -0.34 7.02 16 44 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 45 H 0.10 1.67 4.55 -51.93 -0.24 1.43 16 LS Contribution 337.69 15.07 5.09 5.09 Total: -1.00 -32.51 337.69 -8.56 -41.07 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: -6.76 Total: 6.27 kcal Atomic # 6 Polarization: -19.37 SS G_CDS: -0.32 Total: -19.69 kcal Atomic # 7 Polarization: -52.39 SS G_CDS: 0.00 Total: -52.39 kcal Atomic # 8 Polarization: -60.41 SS G_CDS: -1.60 Total: -62.01 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -4.51 Total: 15.92 kcal Atomic # 16 Polarization: 66.20 SS G_CDS: -0.45 Total: 65.74 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -32.51 -8.56 -41.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192958713.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.880 kcal (2) G-P(sol) polarization free energy of solvation -32.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds