Wall clock time and date at job start Tue Mar 31 2020 05:03:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45198 * 109.47372 * 2 1 4 4 C 1.34230 * 117.00173 * 180.02562 * 3 2 1 5 5 O 1.20818 * 119.99983 * 0.27497 * 4 3 2 6 6 C 1.50706 * 119.99763 * 179.97438 * 4 3 2 7 7 N 1.46500 * 109.46949 * 179.97438 * 6 4 3 8 8 C 1.46494 * 120.00020 * 89.99910 * 7 6 4 9 9 C 1.50694 * 109.47180 * 90.00049 * 8 7 6 10 10 H 1.08003 * 120.00162 * 0.02562 * 9 8 7 11 11 C 1.37882 * 120.00236 * 179.97438 * 9 8 7 12 12 N 1.31514 * 120.00148 * 180.02562 * 11 9 8 13 13 Si 1.86797 * 119.99843 * 0.02562 * 11 9 8 14 14 H 1.48501 * 109.46968 * 90.00198 * 13 11 9 15 15 H 1.48500 * 109.47239 * 209.99781 * 13 11 9 16 16 H 1.48499 * 109.47185 * 330.00075 * 13 11 9 17 17 C 1.34777 * 120.00124 * 270.00237 * 7 6 4 18 18 S 1.71203 * 119.99908 * 0.02562 * 17 7 6 19 19 N 1.34775 * 120.00261 * 179.97438 * 17 7 6 20 20 C 1.46495 * 120.00211 * 180.02562 * 19 17 7 21 21 C 1.53001 * 109.47511 * 180.02562 * 20 19 17 22 22 H 1.09005 * 110.32848 * 305.69859 * 21 20 19 23 23 C 1.54476 * 110.37417 * 183.44632 * 21 20 19 24 24 C 1.54508 * 104.06210 * 217.18716 * 23 21 20 25 25 C 1.54474 * 104.06496 * 0.02562 * 24 23 21 26 26 O 1.44429 * 110.37332 * 67.94588 * 21 20 19 27 27 H 1.08999 * 109.47195 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.46822 * 300.00275 * 1 2 3 29 29 H 1.08998 * 109.47020 * 59.99843 * 1 2 3 30 30 H 1.09003 * 109.46945 * 240.00450 * 2 1 3 31 31 H 1.08998 * 109.47020 * 120.00157 * 2 1 3 32 32 H 1.09000 * 109.47161 * 299.99883 * 6 4 3 33 33 H 1.09001 * 109.46740 * 60.00026 * 6 4 3 34 34 H 1.09000 * 109.47567 * 210.00198 * 8 7 6 35 35 H 1.09002 * 109.47279 * 329.99646 * 8 7 6 36 36 H 0.96996 * 120.00070 * 179.97438 * 12 11 9 37 37 H 0.97002 * 119.99472 * 359.97438 * 19 17 7 38 38 H 1.09005 * 109.47099 * 299.99916 * 20 19 17 39 39 H 1.08998 * 109.47373 * 59.99747 * 20 19 17 40 40 H 1.08992 * 110.51427 * 335.83806 * 23 21 20 41 41 H 1.09002 * 110.50789 * 98.40805 * 23 21 20 42 42 H 1.08997 * 110.50711 * 118.64915 * 24 23 21 43 43 H 1.09003 * 110.51154 * 241.35526 * 24 23 21 44 44 H 1.09001 * 110.37829 * 142.80733 * 25 24 23 45 45 H 1.09002 * 110.37245 * 265.03972 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0807 0.5866 -0.0060 6 6 3.9208 2.9374 -0.0012 7 7 5.3838 2.8607 -0.0010 8 6 6.1153 2.8218 -1.2697 9 6 6.4405 4.2272 -1.7053 10 1 6.1334 5.0657 -1.0978 11 6 7.1311 4.4428 -2.8791 12 7 7.4153 5.6694 -3.2591 13 14 7.6629 2.9927 -3.9297 14 1 6.5933 2.6720 -4.9086 15 1 8.9110 3.3390 -4.6560 16 1 7.9072 1.8143 -3.0596 17 6 6.0567 2.8260 1.1662 18 16 5.2017 2.8707 2.6488 19 7 7.4026 2.7549 1.1663 20 6 8.1340 2.7165 2.4351 21 6 9.6362 2.6378 2.1557 22 1 9.8558 1.7951 1.5001 23 6 10.4232 2.5094 3.4787 24 6 11.6964 3.3520 3.2414 25 6 11.5277 3.8904 1.8034 26 8 10.1028 3.8700 1.5641 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5138 0.8900 32 1 3.5845 3.4693 -0.8912 33 1 3.5851 3.4698 0.8888 34 1 7.0395 2.2589 -1.1391 35 1 5.5002 2.3391 -2.0291 36 1 7.9015 5.8210 -4.0846 37 1 7.8869 2.7284 0.3263 38 1 7.9179 3.6193 3.0064 39 1 7.8240 1.8419 3.0068 40 1 9.8450 2.9162 4.3081 41 1 10.6821 1.4678 3.6694 42 1 11.7476 4.1755 3.9536 43 1 12.5868 2.7274 3.3137 44 1 11.9108 4.9084 1.7318 45 1 12.0403 3.2420 1.0928 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001200025351.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:38 Heat of formation + Delta-G solvation = -131.810947 kcal Electronic energy + Delta-G solvation = -26835.871994 eV Core-core repulsion = 22979.195328 eV Total energy + Delta-G solvation = -3856.676666 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.73738 -40.75808 -39.94508 -37.74282 -36.65446 -34.90173 -33.13653 -32.76599 -31.67009 -31.18321 -29.03747 -26.42660 -25.49794 -24.27546 -23.08485 -22.85338 -22.21540 -21.60492 -19.44085 -19.22585 -18.76442 -18.69068 -17.62887 -17.56922 -17.11636 -16.73967 -16.66165 -16.35392 -15.85199 -15.53360 -15.26209 -15.20465 -14.60632 -14.57509 -14.45261 -14.03635 -13.66932 -13.59721 -13.35822 -13.29195 -12.91406 -12.83387 -12.66206 -12.60010 -12.49603 -12.32131 -12.26871 -12.15097 -11.97046 -11.78966 -11.67507 -11.52562 -11.51309 -10.91634 -10.81268 -9.88591 -8.99267 -8.75608 -8.40806 -6.52483 0.40433 0.80691 1.11981 1.29191 1.31493 1.34502 1.41349 1.91121 2.22629 2.31000 2.86493 2.90980 3.50929 3.67039 3.73353 3.91923 3.94389 4.02298 4.10145 4.11176 4.14123 4.24778 4.32142 4.35087 4.42703 4.49790 4.51619 4.58755 4.78692 4.82366 4.86474 4.94664 4.95548 4.99837 5.11913 5.13681 5.17682 5.18504 5.35262 5.41635 5.74853 5.87006 6.06857 6.25439 6.55414 6.66800 7.12936 8.74433 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.009179 B = 0.004521 C = 0.003303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3049.847209 B = 6191.688713 C = 8475.302607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.053 3.947 3 O -0.355 6.355 4 C 0.465 3.535 5 O -0.530 6.530 6 C 0.122 3.878 7 N -0.537 5.537 8 C 0.213 3.787 9 C -0.549 4.549 10 H 0.041 0.959 11 C 0.035 3.965 12 N -0.926 5.926 13 Si 0.933 3.067 14 H -0.261 1.261 15 H -0.279 1.279 16 H -0.246 1.246 17 C 0.587 3.413 18 S -0.732 6.732 19 N -0.667 5.667 20 C 0.136 3.864 21 C 0.058 3.942 22 H 0.083 0.917 23 C -0.139 4.139 24 C -0.145 4.145 25 C 0.032 3.968 26 O -0.400 6.400 27 H 0.102 0.898 28 H 0.068 0.932 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.063 0.937 32 H 0.148 0.852 33 H 0.145 0.855 34 H 0.041 0.959 35 H 0.055 0.945 36 H 0.272 0.728 37 H 0.409 0.591 38 H 0.077 0.923 39 H 0.104 0.896 40 H 0.083 0.917 41 H 0.104 0.896 42 H 0.081 0.919 43 H 0.101 0.899 44 H 0.093 0.907 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.410 -11.158 7.148 13.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.020 4.020 3 O -0.271 6.271 4 C 0.307 3.693 5 O -0.419 6.419 6 C -0.004 4.004 7 N -0.243 5.243 8 C 0.090 3.910 9 C -0.587 4.587 10 H 0.059 0.941 11 C -0.167 4.167 12 N -0.564 5.564 13 Si 0.756 3.244 14 H -0.186 1.186 15 H -0.204 1.204 16 H -0.170 1.170 17 C 0.222 3.778 18 S -0.606 6.606 19 N -0.296 5.296 20 C 0.013 3.987 21 C 0.000 4.000 22 H 0.101 0.899 23 C -0.177 4.177 24 C -0.182 4.182 25 C -0.044 4.044 26 O -0.320 6.320 27 H 0.121 0.879 28 H 0.087 0.913 29 H 0.090 0.910 30 H 0.087 0.913 31 H 0.081 0.919 32 H 0.166 0.834 33 H 0.162 0.838 34 H 0.059 0.941 35 H 0.073 0.927 36 H 0.082 0.918 37 H 0.249 0.751 38 H 0.095 0.905 39 H 0.122 0.878 40 H 0.101 0.899 41 H 0.123 0.877 42 H 0.099 0.901 43 H 0.119 0.881 44 H 0.112 0.888 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 1.077 -11.177 7.816 13.681 hybrid contribution 1.095 -0.267 -1.802 2.125 sum 2.172 -11.444 6.014 13.109 Atomic orbital electron populations 1.21819 0.89875 1.04472 1.03861 1.23322 0.97390 0.79027 1.02305 1.86482 1.22914 1.34022 1.83663 1.24057 0.81257 0.92666 0.71300 1.90615 1.61184 1.43620 1.46524 1.21287 0.77779 0.91760 1.09544 1.46582 1.06418 1.66594 1.04678 1.19900 0.92970 0.97060 0.81118 1.21223 1.38389 0.91167 1.07941 0.94070 1.25623 0.94596 0.98297 0.98177 1.70006 1.39983 1.22261 1.24112 0.85938 0.78865 0.79839 0.79803 1.18607 1.20407 1.16994 1.21799 0.85844 0.79702 0.90412 1.93020 1.70058 1.79526 1.17971 1.45114 1.02884 1.69331 1.12267 1.21886 0.88814 1.04466 0.83557 1.23419 0.92234 0.88126 0.96239 0.89925 1.22896 0.96005 1.02903 0.95871 1.22919 0.98648 1.00471 0.96211 1.23658 0.81127 1.02810 0.96831 1.89294 1.23216 1.40267 1.79253 0.87926 0.91290 0.90973 0.91275 0.91892 0.83431 0.83773 0.94102 0.92727 0.91827 0.75137 0.90516 0.87845 0.89874 0.87724 0.90056 0.88054 0.88840 0.91406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.28 10.29 71.98 0.74 -1.54 16 2 C 0.05 1.26 6.19 71.98 0.45 1.71 16 3 O -0.35 -10.64 10.22 -51.41 -0.53 -11.17 16 4 C 0.47 16.43 8.02 71.24 0.57 17.00 16 5 O -0.53 -21.36 16.18 21.99 0.36 -21.00 16 6 C 0.12 4.35 5.76 85.63 0.49 4.85 16 7 N -0.54 -21.90 1.94 -718.54 -1.40 -23.30 16 8 C 0.21 9.11 4.00 85.63 0.34 9.46 16 9 C -0.55 -28.20 9.94 25.60 0.25 -27.94 16 10 H 0.04 2.45 8.06 -2.91 -0.02 2.42 16 11 C 0.03 1.81 5.47 84.66 0.46 2.27 16 12 N -0.93 -53.11 13.96 21.45 0.30 -52.81 16 13 Si 0.93 38.85 27.47 68.60 1.88 40.73 16 14 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 15 H -0.28 -11.56 7.11 99.48 0.71 -10.86 16 16 H -0.25 -9.42 6.54 99.48 0.65 -8.77 16 17 C 0.59 24.33 7.70 179.05 1.38 25.71 16 18 S -0.73 -32.11 27.17 -56.49 -1.53 -33.64 16 19 N -0.67 -24.79 5.42 -350.17 -1.90 -26.69 16 20 C 0.14 4.14 4.73 86.38 0.41 4.55 16 21 C 0.06 1.44 3.31 31.10 0.10 1.54 16 22 H 0.08 1.88 8.14 -2.38 -0.02 1.86 16 23 C -0.14 -2.39 6.63 31.61 0.21 -2.18 16 24 C -0.14 -2.24 7.09 31.61 0.22 -2.02 16 25 C 0.03 0.69 7.63 72.48 0.55 1.24 16 26 O -0.40 -12.38 11.35 -148.98 -1.69 -14.07 16 27 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.07 1.61 8.13 -2.39 -0.02 1.59 16 31 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.15 4.71 8.07 -2.39 -0.02 4.69 16 33 H 0.14 5.24 6.58 -2.39 -0.02 5.22 16 34 H 0.04 1.71 5.42 -2.39 -0.01 1.69 16 35 H 0.05 2.24 7.50 -2.39 -0.02 2.23 16 36 H 0.27 14.57 8.31 -92.71 -0.77 13.80 16 37 H 0.41 15.49 6.20 -92.71 -0.58 14.92 16 38 H 0.08 2.60 7.99 -2.38 -0.02 2.59 16 39 H 0.10 2.97 7.99 -2.39 -0.02 2.95 16 40 H 0.08 1.45 7.87 -2.39 -0.02 1.43 16 41 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 42 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 43 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 44 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 45 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 Total: -1.00 -71.84 384.76 2.04 -69.79 By element: Atomic # 1 Polarization: 37.14 SS G_CDS: 0.36 Total: 37.50 kcal Atomic # 6 Polarization: 28.45 SS G_CDS: 6.19 Total: 34.64 kcal Atomic # 7 Polarization: -99.80 SS G_CDS: -2.99 Total: -102.79 kcal Atomic # 8 Polarization: -44.38 SS G_CDS: -1.86 Total: -46.24 kcal Atomic # 14 Polarization: 38.85 SS G_CDS: 1.88 Total: 40.73 kcal Atomic # 16 Polarization: -32.11 SS G_CDS: -1.53 Total: -33.64 kcal Total: -71.84 2.04 -69.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200025351.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.017 kcal (2) G-P(sol) polarization free energy of solvation -71.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds