Wall clock time and date at job start Tue Mar 31 2020 05:58:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81395 * 1 3 3 O 1.42099 * 108.58026 * 2 1 4 4 O 1.42102 * 108.57667 * 228.97437 * 2 1 3 5 5 C 1.81399 * 101.92187 * 114.48976 * 2 1 3 6 6 C 1.52997 * 109.47445 * 179.97438 * 5 2 1 7 7 C 1.50698 * 109.47224 * 179.97438 * 6 5 2 8 8 O 1.21283 * 120.00317 * 0.02562 * 7 6 5 9 9 N 1.34778 * 119.99796 * 179.97438 * 7 6 5 10 10 C 1.46499 * 119.99683 * 180.02562 * 9 7 6 11 11 H 1.09003 * 112.89031 * 26.84091 * 10 9 7 12 12 C 1.53952 * 113.66328 * 255.49356 * 10 9 7 13 13 C 1.53952 * 87.29627 * 220.70266 * 12 10 9 14 14 H 1.09002 * 113.66257 * 139.29664 * 13 12 10 15 15 N 1.46498 * 113.65985 * 270.26239 * 13 12 10 16 16 C 1.36943 * 119.99752 * 253.70920 * 15 13 12 17 17 H 1.08002 * 119.99793 * 0.27665 * 16 15 13 18 18 C 1.38811 * 120.00012 * 180.27737 * 16 15 13 19 19 N 1.31611 * 120.00081 * 180.02562 * 18 16 15 20 20 Si 1.86800 * 119.99814 * 0.02562 * 18 16 15 21 21 H 1.48501 * 109.47483 * 90.00178 * 20 18 16 22 22 H 1.48498 * 109.47011 * 210.00042 * 20 18 16 23 23 H 1.48502 * 109.47495 * 329.99664 * 20 18 16 24 24 C 1.52909 * 86.88438 * 24.78058 * 13 12 10 25 25 C 1.52909 * 121.14074 * 209.33275 * 24 13 12 26 26 C 1.53954 * 86.78350 * 209.37437 * 25 24 13 27 27 C 1.52905 * 121.14029 * 100.76712 * 24 13 12 28 28 H 1.09002 * 109.46922 * 305.51373 * 1 2 3 29 29 H 1.09005 * 109.46938 * 65.50956 * 1 2 3 30 30 H 1.08997 * 109.47291 * 185.50988 * 1 2 3 31 31 H 1.09008 * 109.47354 * 59.99655 * 5 2 1 32 32 H 1.08999 * 109.46959 * 300.00054 * 5 2 1 33 33 H 1.08996 * 109.46919 * 59.99981 * 6 5 2 34 34 H 1.08999 * 109.47224 * 300.00060 * 6 5 2 35 35 H 0.96997 * 120.00457 * 359.97438 * 9 7 6 36 36 H 1.08996 * 113.57906 * 106.09585 * 12 10 9 37 37 H 1.08999 * 113.64511 * 335.31393 * 12 10 9 38 38 H 0.97001 * 120.00384 * 73.99275 * 15 13 12 39 39 H 0.97008 * 120.00329 * 179.97438 * 19 18 16 40 40 H 1.09002 * 113.66323 * 323.85124 * 25 24 13 41 41 H 1.09001 * 113.66091 * 94.90602 * 25 24 13 42 42 H 1.08991 * 113.58006 * 270.13684 * 26 25 24 43 43 H 1.09002 * 113.57874 * 139.33852 * 26 25 24 44 44 H 1.08996 * 113.66435 * 265.10147 * 27 24 13 45 45 H 1.09003 * 113.66343 * 36.15604 * 27 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3469 0.0000 4 8 2.2667 -0.8842 -1.0162 5 6 2.1887 -0.7357 1.6152 6 6 3.7054 -0.8197 1.7979 7 6 4.0166 -1.4303 3.1400 8 8 3.1142 -1.7659 3.8776 9 7 5.2979 -1.6045 3.5202 10 6 5.6004 -2.1987 4.8247 11 1 4.8109 -2.8593 5.1831 12 6 6.0747 -1.1769 5.8740 13 6 7.1076 -2.2266 6.3228 14 1 8.0875 -1.8068 6.5501 15 7 6.6157 -3.1250 7.3703 16 6 7.0622 -2.9853 8.6573 17 1 7.7735 -2.2100 8.9010 18 6 6.6005 -3.8402 9.6487 19 7 7.0292 -3.7057 10.8858 20 14 5.3708 -5.1816 9.2271 21 1 6.0987 -6.4186 8.8460 22 1 4.5132 -5.4559 10.4079 23 1 4.5227 -4.7368 8.0921 24 6 7.0021 -2.8110 4.9138 25 6 7.2348 -4.3000 4.6558 26 6 7.7242 -3.8920 3.2543 27 6 8.0633 -2.5150 3.8535 28 1 -0.3633 0.5970 0.8365 29 1 -0.3633 0.4260 -0.9353 30 1 -0.3634 -1.0229 0.0987 31 1 1.7609 -1.7371 1.6664 32 1 1.7610 -0.1172 2.4042 33 1 4.1334 0.1814 1.7466 34 1 4.1327 -1.4385 1.0089 35 1 6.0196 -1.3373 2.9299 36 1 5.3251 -0.9507 6.6323 37 1 6.5222 -0.2820 5.4417 38 1 5.9769 -3.8214 7.1514 39 1 6.7063 -4.3028 11.5787 40 1 8.0137 -4.7359 5.2815 41 1 6.3187 -4.8905 4.6444 42 1 6.9307 -3.8592 2.5078 43 1 8.5991 -4.4489 2.9186 44 1 7.8092 -1.6795 3.2013 45 1 9.0751 -2.4493 4.2537 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001203095249.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:35 Heat of formation + Delta-G solvation = -46.855635 kcal Electronic energy + Delta-G solvation = -26575.799653 eV Core-core repulsion = 22722.806925 eV Total energy + Delta-G solvation = -3852.992728 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 1.92 seconds Orbital eigenvalues (eV) -40.84265 -39.18389 -37.39976 -36.46018 -35.29401 -34.22280 -33.53186 -32.38372 -30.28109 -30.06950 -26.11658 -25.72124 -24.44374 -23.90812 -22.41516 -20.50079 -20.22920 -19.30818 -18.51147 -17.88471 -17.22482 -16.77020 -16.55206 -16.26828 -15.98979 -15.70454 -15.27493 -14.96640 -14.48935 -14.01498 -13.90115 -13.66803 -13.66336 -13.10587 -12.89979 -12.84406 -12.57988 -12.50924 -12.41218 -12.29110 -12.13071 -12.09573 -11.87194 -11.72198 -11.52691 -11.13180 -11.06704 -10.94658 -10.82468 -10.29148 -10.23377 -10.01311 -9.92162 -9.65566 -9.52971 -8.91137 -8.83349 -7.31815 -5.81634 -3.17924 -0.48931 2.26380 2.51190 2.95908 3.31139 3.35698 3.39663 3.43771 3.57046 4.01229 4.26804 4.31839 4.51357 4.53797 4.54926 4.56963 4.62361 4.79316 4.94844 4.98049 5.07808 5.16155 5.17385 5.31590 5.36557 5.49604 5.54060 5.68162 5.76718 5.84770 5.91438 5.95223 6.08523 6.17983 6.28023 6.45919 6.53286 6.56928 6.66223 6.89015 7.46858 7.95172 8.14498 8.37778 9.15367 9.87787 10.06557 11.36286 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.018069 B = 0.002695 C = 0.002527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.276314 B =10387.902007 C =11079.863387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.655 4.655 2 S 2.422 3.578 3 O -0.939 6.939 4 O -0.940 6.940 5 C -0.595 4.595 6 C -0.135 4.135 7 C 0.517 3.483 8 O -0.536 6.536 9 N -0.714 5.714 10 C 0.149 3.851 11 H 0.111 0.889 12 C -0.181 4.181 13 C 0.192 3.808 14 H 0.076 0.924 15 N -0.726 5.726 16 C -0.247 4.247 17 H 0.092 0.908 18 C 0.008 3.992 19 N -0.931 5.931 20 Si 0.880 3.120 21 H -0.283 1.283 22 H -0.290 1.290 23 H -0.276 1.276 24 C -0.130 4.130 25 C -0.120 4.120 26 C -0.141 4.141 27 C -0.108 4.108 28 H 0.130 0.870 29 H 0.129 0.871 30 H 0.130 0.870 31 H 0.140 0.860 32 H 0.141 0.859 33 H 0.110 0.890 34 H 0.109 0.891 35 H 0.399 0.601 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.363 0.637 39 H 0.260 0.740 40 H 0.090 0.910 41 H 0.061 0.939 42 H 0.073 0.927 43 H 0.064 0.936 44 H 0.061 0.939 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.091 6.235 -24.641 26.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.804 4.804 2 S 2.605 3.395 3 O -0.936 6.936 4 O -0.937 6.937 5 C -0.724 4.724 6 C -0.176 4.176 7 C 0.302 3.698 8 O -0.413 6.413 9 N -0.365 5.365 10 C 0.045 3.955 11 H 0.129 0.871 12 C -0.223 4.223 13 C 0.079 3.921 14 H 0.094 0.906 15 N -0.365 5.365 16 C -0.376 4.376 17 H 0.110 0.890 18 C -0.188 4.188 19 N -0.578 5.578 20 Si 0.710 3.290 21 H -0.210 1.210 22 H -0.216 1.216 23 H -0.202 1.202 24 C -0.133 4.133 25 C -0.157 4.157 26 C -0.178 4.178 27 C -0.146 4.146 28 H 0.149 0.851 29 H 0.148 0.852 30 H 0.148 0.852 31 H 0.158 0.842 32 H 0.159 0.841 33 H 0.128 0.872 34 H 0.127 0.873 35 H 0.234 0.766 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.196 0.804 39 H 0.070 0.930 40 H 0.108 0.892 41 H 0.080 0.920 42 H 0.092 0.908 43 H 0.083 0.917 44 H 0.079 0.921 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -8.060 6.341 -24.500 26.560 hybrid contribution -1.327 -1.132 0.220 1.758 sum -9.388 5.209 -24.280 26.548 Atomic orbital electron populations 1.30240 1.26486 1.11820 1.11882 1.07779 0.78489 0.75767 0.77510 1.93612 1.79080 1.34452 1.86482 1.93609 1.79107 1.67006 1.53982 1.30139 1.03968 1.15252 1.23020 1.21366 0.93528 1.04519 0.98214 1.20221 0.83203 0.78719 0.87690 1.90727 1.45576 1.50345 1.54662 1.46089 1.07013 1.63161 1.20280 1.22383 0.95298 0.96056 0.81753 0.87092 1.24265 1.01788 0.98049 0.98178 1.20731 0.95757 0.89959 0.85647 0.90556 1.42441 1.51833 1.36787 1.05431 1.19076 1.21530 1.14206 0.82808 0.88994 1.24652 0.99748 0.99082 0.95298 1.69691 1.47228 1.40539 1.00347 0.86612 0.81927 0.82991 0.77439 1.20956 1.21622 1.20221 1.23576 0.94623 0.96825 0.98269 1.22613 1.01575 0.95523 0.96009 1.22863 1.00736 0.97100 0.97112 1.22515 0.98714 0.96787 0.96589 0.85141 0.85195 0.85179 0.84178 0.84094 0.87190 0.87268 0.76557 0.90716 0.90748 0.80373 0.92963 0.89170 0.92006 0.90794 0.91691 0.92083 0.89258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -1.95 10.62 101.05 1.07 -0.88 16 2 S 2.42 14.28 5.36 -107.50 -0.58 13.70 16 3 O -0.94 -8.98 18.10 -57.83 -1.05 -10.02 16 4 O -0.94 -8.89 18.10 -57.83 -1.05 -9.94 16 5 C -0.59 -3.77 5.09 37.16 0.19 -3.58 16 6 C -0.14 -1.07 5.71 -27.89 -0.16 -1.23 16 7 C 0.52 6.30 7.83 -10.99 -0.09 6.21 16 8 O -0.54 -8.76 15.62 5.55 0.09 -8.67 16 9 N -0.71 -8.23 5.31 -53.22 -0.28 -8.51 16 10 C 0.15 2.23 4.01 -67.32 -0.27 1.96 16 11 H 0.11 2.00 7.54 -51.93 -0.39 1.60 16 12 C -0.18 -2.96 7.68 -25.74 -0.20 -3.16 16 13 C 0.19 3.47 4.35 -67.48 -0.29 3.18 16 14 H 0.08 1.41 8.11 -51.93 -0.42 0.99 16 15 N -0.73 -16.56 4.91 -52.99 -0.26 -16.82 16 16 C -0.25 -6.78 10.45 -15.06 -0.16 -6.93 16 17 H 0.09 2.70 8.06 -52.49 -0.42 2.27 16 18 C 0.01 0.24 5.50 -17.43 -0.10 0.15 16 19 N -0.93 -28.91 13.97 55.49 0.78 -28.14 16 20 Si 0.88 22.04 27.74 -169.99 -4.71 17.33 16 21 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 22 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 23 H -0.28 -6.63 6.52 56.52 0.37 -6.26 16 24 C -0.13 -1.85 0.92 -154.55 -0.14 -2.00 16 25 C -0.12 -1.69 7.46 -26.28 -0.20 -1.88 16 26 C -0.14 -1.53 8.08 -25.75 -0.21 -1.73 16 27 C -0.11 -1.18 7.46 -26.28 -0.20 -1.38 16 28 H 0.13 0.22 8.14 -51.92 -0.42 -0.21 16 29 H 0.13 0.31 8.14 -51.92 -0.42 -0.11 16 30 H 0.13 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.14 0.78 8.10 -51.92 -0.42 0.36 16 32 H 0.14 0.80 8.10 -51.92 -0.42 0.38 16 33 H 0.11 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.11 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.40 3.42 6.69 -40.82 -0.27 3.15 16 36 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 37 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.36 8.32 5.64 -40.82 -0.23 8.09 16 39 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 40 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 41 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 42 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 43 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 44 H 0.06 0.54 6.43 -51.93 -0.33 0.20 16 45 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 379.69 15.07 5.72 5.72 Total: -1.00 -38.68 379.69 -9.24 -47.92 By element: Atomic # 1 Polarization: 15.87 SS G_CDS: -7.16 Total: 8.71 kcal Atomic # 6 Polarization: -10.53 SS G_CDS: -0.74 Total: -11.27 kcal Atomic # 7 Polarization: -53.70 SS G_CDS: 0.23 Total: -53.47 kcal Atomic # 8 Polarization: -26.63 SS G_CDS: -2.01 Total: -28.64 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -4.71 Total: 17.33 kcal Atomic # 16 Polarization: 14.28 SS G_CDS: -0.58 Total: 13.70 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -38.68 -9.24 -47.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203095249.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.060 kcal (2) G-P(sol) polarization free energy of solvation -38.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.92 seconds