Wall clock time and date at job start Tue Mar 31 2020 05:58:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 O 1.42101 * 108.57777 * 2 1 4 4 O 1.42093 * 108.57764 * 228.97435 * 2 1 3 5 5 C 1.81396 * 101.92015 * 114.48736 * 2 1 3 6 6 C 1.53004 * 109.47142 * 179.97438 * 5 2 1 7 7 C 1.50700 * 109.47208 * 179.97438 * 6 5 2 8 8 O 1.21283 * 119.99803 * 359.97438 * 7 6 5 9 9 N 1.34777 * 119.99675 * 180.27843 * 7 6 5 10 10 C 1.46497 * 119.99525 * 179.72583 * 9 7 6 11 11 H 1.08998 * 112.89218 * 336.34556 * 10 9 7 12 12 C 1.53955 * 113.66485 * 107.81233 * 10 9 7 13 13 C 1.53950 * 87.29825 * 89.73343 * 12 10 9 14 14 H 1.08997 * 113.66122 * 270.26573 * 13 12 10 15 15 N 1.46499 * 113.74574 * 139.21323 * 13 12 10 16 16 C 1.36945 * 119.99378 * 107.77411 * 15 13 12 17 17 H 1.07993 * 120.00132 * 0.02562 * 16 15 13 18 18 C 1.38807 * 119.99576 * 179.97438 * 16 15 13 19 19 N 1.31622 * 119.99945 * 179.97438 * 18 16 15 20 20 Si 1.86801 * 120.00370 * 0.02562 * 18 16 15 21 21 H 1.48507 * 109.47015 * 89.99838 * 20 18 16 22 22 H 1.48499 * 109.47157 * 209.99746 * 20 18 16 23 23 H 1.48494 * 109.47070 * 329.99849 * 20 18 16 24 24 C 1.52909 * 113.66115 * 204.99371 * 10 9 7 25 25 C 1.52912 * 121.13510 * 144.70591 * 24 10 9 26 26 C 1.53947 * 86.78509 * 209.38321 * 25 24 10 27 27 C 1.52916 * 121.13473 * 36.15070 * 24 10 9 28 28 H 1.09002 * 109.47231 * 305.51434 * 1 2 3 29 29 H 1.08999 * 109.47189 * 65.51027 * 1 2 3 30 30 H 1.09004 * 109.47394 * 185.51241 * 1 2 3 31 31 H 1.09000 * 109.47615 * 59.99904 * 5 2 1 32 32 H 1.08998 * 109.47536 * 299.99858 * 5 2 1 33 33 H 1.09009 * 109.46730 * 59.99806 * 6 5 2 34 34 H 1.08998 * 109.46846 * 300.00350 * 6 5 2 35 35 H 0.97000 * 119.99894 * 359.71837 * 9 7 6 36 36 H 1.08999 * 113.58046 * 204.34456 * 12 10 9 37 37 H 1.09003 * 113.57379 * 335.13145 * 12 10 9 38 38 H 0.97000 * 120.00476 * 287.77711 * 15 13 12 39 39 H 0.97001 * 120.00118 * 179.97438 * 19 18 16 40 40 H 1.09004 * 113.66499 * 323.85857 * 25 24 10 41 41 H 1.08999 * 113.66010 * 94.91568 * 25 24 10 42 42 H 1.08999 * 113.58069 * 270.13638 * 26 25 24 43 43 H 1.08997 * 113.65513 * 139.34732 * 26 25 24 44 44 H 1.08999 * 113.65700 * 265.08473 * 27 24 10 45 45 H 1.08997 * 113.66089 * 36.05622 * 27 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3470 0.0000 4 8 2.2667 -0.8841 -1.0161 5 6 2.1887 -0.7357 1.6152 6 6 3.7055 -0.8196 1.7979 7 6 4.0167 -1.4302 3.1401 8 8 3.1143 -1.7648 3.8780 9 7 5.2980 -1.5987 3.5228 10 6 5.6005 -2.1868 4.8300 11 1 4.7870 -2.0699 5.5460 12 6 6.1539 -3.6211 4.7492 13 6 7.5585 -2.9966 4.6651 14 1 7.8836 -2.7867 3.6461 15 7 8.5692 -3.7096 5.4502 16 6 9.5279 -4.4547 4.8169 17 1 9.5392 -4.5163 3.7388 18 6 10.4858 -5.1299 5.5608 19 7 11.4070 -5.8464 4.9522 20 14 10.4667 -5.0228 7.4256 21 1 9.6269 -6.1170 7.9757 22 1 11.8524 -5.1543 7.9432 23 1 9.9058 -3.7119 7.8404 24 6 6.9676 -1.7827 5.3831 25 6 7.1824 -1.5687 6.8818 26 6 8.2720 -0.5532 6.4926 27 6 7.5291 -0.3787 5.1554 28 1 -0.3634 0.5970 0.8365 29 1 -0.3633 0.4260 -0.9352 30 1 -0.3634 -1.0229 0.0987 31 1 1.7610 -1.7369 1.6665 32 1 1.7610 -0.1171 2.4042 33 1 4.1335 0.1816 1.7465 34 1 4.1327 -1.4384 1.0089 35 1 6.0197 -1.3308 2.9327 36 1 5.9892 -4.2037 5.6556 37 1 5.8580 -4.1523 3.8445 38 1 8.5592 -3.6540 6.4186 39 1 12.0766 -6.3179 5.4720 40 1 6.3267 -1.1202 7.3868 41 1 7.5680 -2.4476 7.3984 42 1 9.2625 -0.9957 6.3865 43 1 8.2740 0.3446 7.1106 44 1 8.1918 -0.3072 4.2930 45 1 6.7707 0.4039 5.1736 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001203095251.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:42 Heat of formation + Delta-G solvation = -47.005713 kcal Electronic energy + Delta-G solvation = -26458.916186 eV Core-core repulsion = 22605.916951 eV Total energy + Delta-G solvation = -3852.999235 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 1.81 seconds Orbital eigenvalues (eV) -40.82064 -39.23673 -37.37995 -36.43759 -35.22845 -34.22618 -33.54739 -32.24084 -30.46411 -30.07701 -26.01925 -25.62000 -24.35213 -24.27162 -21.87838 -20.91131 -20.13742 -19.28747 -18.48740 -17.88239 -17.22917 -16.75668 -16.50919 -16.27899 -15.97767 -15.63418 -15.18828 -14.94107 -14.57458 -14.09984 -13.88781 -13.68965 -13.65283 -13.23068 -12.93212 -12.74713 -12.56850 -12.48345 -12.38829 -12.27462 -12.14020 -11.98831 -11.85400 -11.58231 -11.51009 -11.07211 -11.04067 -10.98024 -10.76361 -10.29776 -10.19191 -10.01400 -9.90677 -9.73748 -9.52438 -8.92291 -8.84468 -7.32395 -5.83380 -3.19220 -0.47754 2.27996 2.48163 2.92361 3.29717 3.31708 3.34805 3.40917 3.58059 4.02225 4.26880 4.32175 4.52690 4.54010 4.55630 4.61761 4.83170 4.89685 5.00603 5.04838 5.08002 5.13613 5.17249 5.29163 5.36031 5.49094 5.59284 5.76365 5.85089 5.88105 5.92653 5.98701 6.14783 6.23363 6.27867 6.35630 6.50153 6.67910 6.73247 6.86719 7.45496 7.92656 8.11601 8.36257 9.13717 9.86135 10.05786 11.34704 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.022443 B = 0.002461 C = 0.002360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.310927 B =11376.040893 C =11861.820709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.655 4.655 2 S 2.422 3.578 3 O -0.939 6.939 4 O -0.937 6.937 5 C -0.594 4.594 6 C -0.136 4.136 7 C 0.523 3.477 8 O -0.542 6.542 9 N -0.702 5.702 10 C 0.130 3.870 11 H 0.097 0.903 12 C -0.175 4.175 13 C 0.198 3.802 14 H 0.085 0.915 15 N -0.732 5.732 16 C -0.248 4.248 17 H 0.091 0.909 18 C 0.007 3.993 19 N -0.931 5.931 20 Si 0.880 3.120 21 H -0.284 1.284 22 H -0.290 1.290 23 H -0.275 1.275 24 C -0.126 4.126 25 C -0.112 4.112 26 C -0.134 4.134 27 C -0.124 4.124 28 H 0.129 0.871 29 H 0.129 0.871 30 H 0.130 0.870 31 H 0.140 0.860 32 H 0.139 0.861 33 H 0.111 0.889 34 H 0.112 0.888 35 H 0.404 0.596 36 H 0.085 0.915 37 H 0.064 0.936 38 H 0.364 0.636 39 H 0.260 0.740 40 H 0.078 0.922 41 H 0.070 0.930 42 H 0.088 0.912 43 H 0.059 0.941 44 H 0.068 0.932 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.901 14.573 -5.782 26.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.805 4.805 2 S 2.604 3.396 3 O -0.936 6.936 4 O -0.934 6.934 5 C -0.723 4.723 6 C -0.177 4.177 7 C 0.307 3.693 8 O -0.419 6.419 9 N -0.351 5.351 10 C 0.024 3.976 11 H 0.115 0.885 12 C -0.217 4.217 13 C 0.086 3.914 14 H 0.103 0.897 15 N -0.372 5.372 16 C -0.378 4.378 17 H 0.109 0.891 18 C -0.189 4.189 19 N -0.578 5.578 20 Si 0.710 3.290 21 H -0.210 1.210 22 H -0.217 1.217 23 H -0.202 1.202 24 C -0.128 4.128 25 C -0.150 4.150 26 C -0.171 4.171 27 C -0.162 4.162 28 H 0.148 0.852 29 H 0.148 0.852 30 H 0.148 0.852 31 H 0.159 0.841 32 H 0.158 0.842 33 H 0.129 0.871 34 H 0.130 0.870 35 H 0.238 0.762 36 H 0.103 0.897 37 H 0.082 0.918 38 H 0.199 0.801 39 H 0.070 0.930 40 H 0.096 0.904 41 H 0.089 0.911 42 H 0.106 0.894 43 H 0.078 0.922 44 H 0.087 0.913 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -20.775 14.489 -6.078 26.048 hybrid contribution -0.222 -0.297 1.738 1.777 sum -20.997 14.192 -4.340 25.712 Atomic orbital electron populations 1.30248 1.26598 1.11784 1.11829 1.07804 0.78457 0.75790 0.77548 1.93611 1.79060 1.34479 1.86483 1.93620 1.79000 1.66952 1.53878 1.30137 1.03955 1.15227 1.23004 1.21365 0.93487 1.04624 0.98202 1.20169 0.82886 0.78396 0.87804 1.90691 1.45595 1.50932 1.54718 1.45588 1.07199 1.62991 1.19342 1.21710 0.96652 0.95003 0.84224 0.88483 1.24246 0.99976 0.95118 1.02331 1.21275 0.87196 0.88300 0.94627 0.89706 1.42739 1.32706 1.57359 1.04437 1.19109 1.04157 1.21169 0.93377 0.89140 1.24678 0.97507 0.99486 0.97239 1.69697 1.18198 1.35562 1.34372 0.86624 0.77097 0.77807 0.87443 1.21029 1.21658 1.20159 1.23626 0.95049 0.96647 0.97516 1.22480 0.98717 0.99628 0.94131 1.22764 0.98995 0.98569 0.96808 1.22633 0.99240 0.95904 0.98402 0.85233 0.85202 0.85175 0.84138 0.84240 0.87097 0.86952 0.76181 0.89660 0.91757 0.80144 0.92986 0.90378 0.91120 0.89371 0.92182 0.91316 0.90711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -1.77 10.62 101.05 1.07 -0.69 16 2 S 2.42 14.11 5.36 -107.50 -0.58 13.53 16 3 O -0.94 -8.88 18.10 -57.83 -1.05 -9.92 16 4 O -0.94 -9.16 18.10 -57.83 -1.05 -10.20 16 5 C -0.59 -3.50 5.09 37.16 0.19 -3.31 16 6 C -0.14 -1.05 5.71 -27.88 -0.16 -1.21 16 7 C 0.52 6.00 7.83 -10.98 -0.09 5.91 16 8 O -0.54 -8.03 15.58 5.55 0.09 -7.94 16 9 N -0.70 -7.99 5.05 -53.37 -0.27 -8.26 16 10 C 0.13 1.78 4.12 -67.48 -0.28 1.51 16 11 H 0.10 1.42 7.46 -51.93 -0.39 1.04 16 12 C -0.17 -2.83 7.69 -25.75 -0.20 -3.03 16 13 C 0.20 3.49 4.27 -67.48 -0.29 3.20 16 14 H 0.09 1.50 8.10 -51.93 -0.42 1.08 16 15 N -0.73 -16.26 5.13 -52.99 -0.27 -16.53 16 16 C -0.25 -6.71 10.45 -15.06 -0.16 -6.87 16 17 H 0.09 2.62 8.06 -52.49 -0.42 2.20 16 18 C 0.01 0.20 5.50 -17.43 -0.10 0.10 16 19 N -0.93 -28.64 13.97 55.49 0.78 -27.86 16 20 Si 0.88 21.52 27.74 -169.99 -4.71 16.81 16 21 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 22 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 23 H -0.28 -6.25 6.52 56.52 0.37 -5.88 16 24 C -0.13 -1.80 0.92 -154.71 -0.14 -1.94 16 25 C -0.11 -1.59 7.47 -26.28 -0.20 -1.79 16 26 C -0.13 -1.86 8.08 -25.75 -0.21 -2.07 16 27 C -0.12 -1.57 7.49 -26.27 -0.20 -1.77 16 28 H 0.13 0.15 8.14 -51.92 -0.42 -0.27 16 29 H 0.13 0.29 8.14 -51.92 -0.42 -0.13 16 30 H 0.13 0.17 8.14 -51.92 -0.42 -0.25 16 31 H 0.14 0.72 8.10 -51.92 -0.42 0.30 16 32 H 0.14 0.67 8.10 -51.92 -0.42 0.25 16 33 H 0.11 0.66 8.14 -51.92 -0.42 0.23 16 34 H 0.11 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.40 3.79 8.62 -40.82 -0.35 3.44 16 36 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 37 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.36 8.01 3.78 -40.82 -0.15 7.86 16 39 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 40 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.07 1.14 6.42 -51.93 -0.33 0.80 16 42 H 0.09 1.44 8.14 -51.93 -0.42 1.01 16 43 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 44 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 45 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 379.64 15.07 5.72 5.72 Total: -1.00 -38.11 379.64 -9.24 -47.35 By element: Atomic # 1 Polarization: 16.42 SS G_CDS: -7.15 Total: 9.26 kcal Atomic # 6 Polarization: -11.21 SS G_CDS: -0.74 Total: -11.95 kcal Atomic # 7 Polarization: -52.89 SS G_CDS: 0.23 Total: -52.65 kcal Atomic # 8 Polarization: -26.06 SS G_CDS: -2.01 Total: -28.07 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.71 Total: 16.81 kcal Atomic # 16 Polarization: 14.11 SS G_CDS: -0.58 Total: 13.53 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -38.11 -9.24 -47.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203095251.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.346 kcal (2) G-P(sol) polarization free energy of solvation -38.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.81 seconds