Wall clock time and date at job start Tue Mar 31 2020 05:09:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 S 1.81401 * 109.47158 * 2 1 4 4 O 1.42094 * 108.57826 * 65.51110 * 3 2 1 5 5 O 1.42105 * 108.57376 * 294.48685 * 3 2 1 6 6 C 1.81397 * 101.91887 * 180.02562 * 3 2 1 7 7 C 1.50707 * 109.47082 * 179.97438 * 6 3 2 8 8 O 1.21281 * 119.99479 * 0.02562 * 7 6 3 9 9 N 1.34771 * 120.00140 * 179.97438 * 7 6 3 10 10 C 1.46496 * 119.99960 * 180.02562 * 9 7 6 11 11 H 1.08994 * 112.88607 * 333.15932 * 10 9 7 12 12 C 1.53945 * 113.66561 * 104.50930 * 10 9 7 13 13 C 1.53957 * 87.29527 * 89.82756 * 12 10 9 14 14 H 1.08997 * 113.65822 * 139.20712 * 13 12 10 15 15 N 1.46500 * 113.66452 * 270.26429 * 13 12 10 16 16 C 1.36930 * 120.00101 * 255.49811 * 15 13 12 17 17 H 1.08000 * 120.00135 * 359.97438 * 16 15 13 18 18 C 1.38814 * 119.99954 * 180.02562 * 16 15 13 19 19 N 1.31607 * 120.00190 * 359.97438 * 18 16 15 20 20 Si 1.86806 * 119.99759 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47240 * 0.02562 * 20 18 16 22 22 H 1.48505 * 109.46842 * 120.00000 * 20 18 16 23 23 H 1.48498 * 109.46833 * 239.99766 * 20 18 16 24 24 C 1.52906 * 86.77902 * 24.73921 * 13 12 10 25 25 C 1.52911 * 121.13708 * 209.38067 * 24 13 12 26 26 C 1.53953 * 86.78498 * 209.37459 * 25 24 13 27 27 C 1.52908 * 121.14322 * 100.81952 * 24 13 12 28 28 H 1.08997 * 109.46891 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.46628 * 300.00235 * 1 2 3 30 30 H 1.08999 * 109.47012 * 60.00068 * 1 2 3 31 31 H 1.09003 * 109.46960 * 239.99634 * 2 1 3 32 32 H 1.08999 * 109.47012 * 119.99932 * 2 1 3 33 33 H 1.08999 * 109.47461 * 59.99729 * 6 3 2 34 34 H 1.09001 * 109.47130 * 299.99533 * 6 3 2 35 35 H 0.97002 * 119.99641 * 0.02562 * 9 7 6 36 36 H 1.09004 * 113.57802 * 335.22640 * 12 10 9 37 37 H 1.08997 * 113.65280 * 204.44386 * 12 10 9 38 38 H 0.96999 * 119.99920 * 75.49149 * 15 13 12 39 39 H 0.96997 * 120.00331 * 180.02562 * 19 18 16 40 40 H 1.09001 * 113.66341 * 323.84544 * 25 24 13 41 41 H 1.08996 * 113.66624 * 94.90194 * 25 24 13 42 42 H 1.09002 * 113.58246 * 270.13531 * 26 25 24 43 43 H 1.08997 * 113.65416 * 139.34277 * 26 25 24 44 44 H 1.09003 * 113.66175 * 265.09643 * 27 24 13 45 45 H 1.09004 * 113.66268 * 36.05302 * 27 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 16 2.1348 1.7103 0.0000 4 8 1.7593 2.3232 1.2257 5 8 1.7593 2.3231 -1.2259 6 6 3.9330 1.4718 -0.0008 7 6 4.6178 2.8144 -0.0015 8 8 3.9575 3.8317 -0.0010 9 7 5.9637 2.8844 -0.0017 10 6 6.6292 4.1894 -0.0018 11 1 6.0236 4.9741 -0.4552 12 6 7.2248 4.5795 1.3631 13 6 8.5214 3.8807 0.9151 14 1 9.4272 4.4187 1.1944 15 7 8.5724 2.4580 1.2611 16 6 9.3534 2.0344 2.3031 17 1 9.9321 2.7490 2.8696 18 6 9.4021 0.6863 2.6306 19 7 8.6974 -0.1846 1.9400 20 14 10.4681 0.1083 4.0516 21 1 11.1545 1.2751 4.6620 22 1 9.6162 -0.5537 5.0721 23 1 11.4803 -0.8559 3.5507 24 6 8.0671 4.1473 -0.5203 25 6 8.4685 3.2138 -1.6630 26 6 8.3881 4.4460 -2.5824 27 6 8.6492 5.3052 -1.3319 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3632 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 4.2253 0.9148 -0.8909 34 1 4.2260 0.9146 0.8890 35 1 6.4916 2.0706 -0.0017 36 1 6.7363 4.0925 2.2072 37 1 7.3344 5.6551 1.5011 38 1 8.0529 1.8162 0.7522 39 1 8.7311 -1.1265 2.1690 40 1 9.4750 2.8075 -1.5630 41 1 7.7228 2.4512 -1.8874 42 1 7.4015 4.6005 -3.0193 43 1 9.1894 4.4945 -3.3197 44 1 8.0479 6.2134 -1.2916 45 1 9.7062 5.4877 -1.1376 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001203769705.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:34 Heat of formation + Delta-G solvation = -46.675327 kcal Electronic energy + Delta-G solvation = -27389.127947 eV Core-core repulsion = 23536.143038 eV Total energy + Delta-G solvation = -3852.984909 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.75632 -38.95982 -36.96050 -35.99120 -35.37406 -33.81354 -33.37303 -32.54001 -30.53030 -29.60827 -25.54966 -24.79747 -24.30292 -24.06878 -22.88454 -20.57552 -20.13196 -18.93715 -18.40853 -17.43981 -17.19112 -16.50728 -16.45420 -16.01461 -15.48509 -15.35283 -15.09181 -14.60717 -14.55059 -14.36702 -13.90478 -13.44766 -13.19088 -13.05454 -12.82214 -12.74235 -12.54237 -12.14100 -12.02313 -11.98206 -11.93292 -11.80325 -11.61916 -11.46749 -11.12313 -11.02825 -10.94667 -10.74722 -10.58967 -10.26128 -10.19387 -10.09155 -9.86538 -9.74372 -9.44154 -8.95778 -8.68573 -7.13270 -5.95927 -3.23570 -0.19669 2.57248 2.66794 3.04984 3.33313 3.40642 3.41645 3.73312 3.91781 4.38032 4.41119 4.45486 4.54419 4.67579 4.85116 4.90993 4.93947 4.95952 5.09297 5.15774 5.25898 5.33444 5.34228 5.40080 5.56074 5.66150 5.80465 5.82316 5.87818 5.94825 6.05063 6.08750 6.17517 6.25477 6.34005 6.53676 6.63714 6.67737 6.85735 6.97952 7.58113 7.61717 8.20564 8.26359 9.35378 9.89716 10.23740 11.27284 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.010300 B = 0.004176 C = 0.003250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2717.876429 B = 6703.498620 C = 8613.156681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.623 4.623 3 S 2.454 3.546 4 O -0.921 6.921 5 O -0.924 6.924 6 C -0.661 4.661 7 C 0.546 3.454 8 O -0.541 6.541 9 N -0.684 5.684 10 C 0.147 3.853 11 H 0.095 0.905 12 C -0.185 4.185 13 C 0.179 3.821 14 H 0.066 0.934 15 N -0.701 5.701 16 C -0.239 4.239 17 H 0.074 0.926 18 C -0.011 4.011 19 N -0.936 5.936 20 Si 0.909 3.091 21 H -0.280 1.280 22 H -0.291 1.291 23 H -0.291 1.291 24 C -0.131 4.131 25 C -0.116 4.116 26 C -0.142 4.142 27 C -0.103 4.103 28 H 0.081 0.919 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.133 0.867 32 H 0.135 0.865 33 H 0.159 0.841 34 H 0.165 0.835 35 H 0.411 0.589 36 H 0.073 0.927 37 H 0.080 0.920 38 H 0.379 0.621 39 H 0.256 0.744 40 H 0.088 0.912 41 H 0.061 0.939 42 H 0.075 0.925 43 H 0.063 0.937 44 H 0.066 0.934 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.099 1.109 -8.014 12.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.752 4.752 3 S 2.631 3.369 4 O -0.918 6.918 5 O -0.921 6.921 6 C -0.788 4.788 7 C 0.330 3.670 8 O -0.420 6.420 9 N -0.335 5.335 10 C 0.042 3.958 11 H 0.113 0.887 12 C -0.228 4.228 13 C 0.067 3.933 14 H 0.084 0.916 15 N -0.340 5.340 16 C -0.369 4.369 17 H 0.092 0.908 18 C -0.207 4.207 19 N -0.585 5.585 20 Si 0.740 3.260 21 H -0.205 1.205 22 H -0.218 1.218 23 H -0.218 1.218 24 C -0.133 4.133 25 C -0.154 4.154 26 C -0.179 4.179 27 C -0.141 4.141 28 H 0.100 0.900 29 H 0.093 0.907 30 H 0.092 0.908 31 H 0.151 0.849 32 H 0.153 0.847 33 H 0.177 0.823 34 H 0.182 0.818 35 H 0.250 0.750 36 H 0.092 0.908 37 H 0.098 0.902 38 H 0.214 0.786 39 H 0.065 0.935 40 H 0.107 0.893 41 H 0.079 0.921 42 H 0.093 0.907 43 H 0.082 0.918 44 H 0.085 0.915 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -9.857 2.537 -7.851 12.854 hybrid contribution 1.269 -2.084 0.720 2.544 sum -8.588 0.453 -7.131 11.172 Atomic orbital electron populations 1.21507 0.90272 1.04806 1.03843 1.30350 1.07624 1.25401 1.11829 1.07379 0.76480 0.77338 0.75743 1.93578 1.79935 1.72509 1.45740 1.93564 1.80065 1.72625 1.45881 1.30872 1.28002 1.05977 1.13956 1.19002 0.83362 0.88170 0.76511 1.90820 1.64352 1.35896 1.50890 1.45582 1.05323 1.10110 1.72479 1.21535 0.91392 0.84820 0.98097 0.88705 1.24296 1.01192 1.00501 0.96761 1.21067 0.94914 0.86994 0.90339 0.91608 1.42093 1.54036 1.00573 1.37346 1.19341 1.19229 0.91757 1.06620 0.90768 1.24710 1.00436 0.95847 0.99684 1.69616 1.44835 1.01780 1.42270 0.86082 0.79680 0.78461 0.81745 1.20470 1.21843 1.21833 1.23402 0.95352 0.98414 0.96127 1.22527 1.02185 0.95847 0.94855 1.22868 1.01338 0.97340 0.96375 1.22485 1.00922 0.95839 0.94894 0.90043 0.90721 0.90787 0.84862 0.84685 0.82314 0.81750 0.75010 0.90779 0.90197 0.78642 0.93455 0.89332 0.92068 0.90671 0.91829 0.91509 0.89530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.92 37.16 0.37 -0.75 16 2 C -0.62 -4.70 6.53 37.16 0.24 -4.46 16 3 S 2.45 30.68 3.96 -107.50 -0.43 30.25 16 4 O -0.92 -15.23 17.95 -59.51 -1.07 -16.30 16 5 O -0.92 -14.51 17.94 -59.54 -1.07 -15.58 16 6 C -0.66 -7.83 6.29 36.01 0.23 -7.61 16 7 C 0.55 9.23 7.85 -10.98 -0.09 9.14 16 8 O -0.54 -10.88 15.26 2.56 0.04 -10.84 16 9 N -0.68 -11.44 4.72 -53.37 -0.25 -11.69 16 10 C 0.15 2.45 4.07 -67.48 -0.27 2.17 16 11 H 0.09 1.59 7.54 -51.93 -0.39 1.20 16 12 C -0.19 -3.27 7.68 -25.75 -0.20 -3.47 16 13 C 0.18 3.33 4.35 -67.48 -0.29 3.04 16 14 H 0.07 1.24 8.12 -51.93 -0.42 0.81 16 15 N -0.70 -15.82 4.97 -52.99 -0.26 -16.08 16 16 C -0.24 -6.14 9.98 -15.06 -0.15 -6.30 16 17 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 18 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 19 N -0.94 -25.65 13.06 55.49 0.72 -24.93 16 20 Si 0.91 21.24 29.55 -169.99 -5.02 16.22 16 21 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 22 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 23 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 24 C -0.13 -2.02 0.77 -154.71 -0.12 -2.14 16 25 C -0.12 -1.73 7.18 -26.28 -0.19 -1.92 16 26 C -0.14 -1.76 8.08 -25.75 -0.21 -1.97 16 27 C -0.10 -1.32 7.84 -26.28 -0.21 -1.53 16 28 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.13 0.67 8.14 -51.92 -0.42 0.25 16 32 H 0.13 0.77 8.14 -51.92 -0.42 0.35 16 33 H 0.16 1.27 8.14 -51.92 -0.42 0.84 16 34 H 0.16 1.63 8.14 -51.92 -0.42 1.21 16 35 H 0.41 6.93 5.94 -40.82 -0.24 6.69 16 36 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 37 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 38 H 0.38 8.66 5.39 -40.82 -0.22 8.44 16 39 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 40 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 41 H 0.06 0.91 7.51 -51.93 -0.39 0.52 16 42 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 45 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 379.41 15.07 5.72 5.72 Total: -1.00 -35.39 379.41 -9.73 -45.12 By element: Atomic # 1 Polarization: 21.42 SS G_CDS: -7.13 Total: 14.29 kcal Atomic # 6 Polarization: -15.19 SS G_CDS: -0.98 Total: -16.17 kcal Atomic # 7 Polarization: -52.92 SS G_CDS: 0.21 Total: -52.71 kcal Atomic # 8 Polarization: -40.62 SS G_CDS: -2.10 Total: -42.72 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Atomic # 16 Polarization: 30.68 SS G_CDS: -0.43 Total: 30.25 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -35.39 -9.73 -45.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203769705.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.552 kcal (2) G-P(sol) polarization free energy of solvation -35.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds