Wall clock time and date at job start Tue Mar 31 2020 05:44:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42904 * 113.99921 * 2 1 4 4 C 1.52999 * 109.46971 * 180.02562 * 3 2 1 5 5 N 1.46895 * 109.47627 * 64.11710 * 4 3 2 6 6 C 1.47620 * 111.00605 * 175.79611 * 5 4 3 7 7 C 1.54329 * 105.66248 * 209.02075 * 6 5 4 8 8 H 1.09005 * 109.99354 * 145.39931 * 7 6 5 9 9 O 1.42290 * 108.84246 * 265.94677 * 7 6 5 10 10 C 1.43187 * 113.95886 * 168.61485 * 9 7 6 11 11 C 1.53242 * 107.38136 * 289.63809 * 10 9 7 12 12 N 1.45707 * 109.35522 * 51.63293 * 11 10 9 13 13 C 1.34777 * 117.50482 * 155.98903 * 12 11 10 14 14 O 1.21281 * 120.00090 * 180.02562 * 13 12 11 15 15 C 1.50700 * 120.00088 * 0.02562 * 13 12 11 16 16 S 1.81002 * 109.47377 * 179.97438 * 15 13 12 17 17 C 1.76200 * 100.00216 * 180.02562 * 16 15 13 18 18 H 1.08004 * 119.99500 * 359.97438 * 17 16 15 19 19 C 1.38798 * 119.99942 * 179.97438 * 17 16 15 20 20 N 1.31627 * 120.00073 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99685 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47348 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.46901 * 120.00130 * 21 19 17 24 24 H 1.48498 * 109.47279 * 239.99978 * 21 19 17 25 25 C 1.44262 * 124.99103 * 335.99344 * 12 11 10 26 26 H 1.08995 * 108.23106 * 128.95623 * 25 12 11 27 27 C 1.47520 * 111.08375 * 56.17725 * 5 4 3 28 28 H 1.09007 * 109.46861 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47012 * 299.99885 * 1 2 3 30 30 H 1.08990 * 109.47237 * 59.99969 * 1 2 3 31 31 H 1.08994 * 109.46873 * 60.00197 * 3 2 1 32 32 H 1.08997 * 109.46966 * 300.00246 * 3 2 1 33 33 H 1.08997 * 109.47068 * 304.11136 * 4 3 2 34 34 H 1.09004 * 109.46924 * 184.11836 * 4 3 2 35 35 H 1.08993 * 110.22532 * 89.94498 * 6 5 4 36 36 H 1.09007 * 110.21818 * 328.09041 * 6 5 4 37 37 H 1.09002 * 109.87555 * 49.10969 * 10 9 7 38 38 H 1.08999 * 109.87652 * 170.09713 * 10 9 7 39 39 H 1.08996 * 109.49496 * 171.59776 * 11 10 9 40 40 H 1.09001 * 109.49524 * 291.64975 * 11 10 9 41 41 H 1.08999 * 109.47565 * 300.00441 * 15 13 12 42 42 H 1.09009 * 109.47049 * 60.00117 * 15 13 12 43 43 H 0.97000 * 119.99774 * 180.02562 * 20 19 17 44 44 H 1.09001 * 109.80630 * 22.74050 * 27 5 4 45 45 H 1.09003 * 109.91971 * 261.60031 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9754 0.5436 -1.2469 6 6 5.4488 0.5002 -1.3282 7 6 5.7842 0.5363 -2.8342 8 1 6.7059 1.0949 -2.9974 9 8 5.9352 -0.7985 -3.3034 10 6 5.9931 -0.9103 -4.7297 11 6 4.5938 -0.5978 -5.2706 12 7 4.1333 0.6684 -4.7159 13 6 3.1991 1.3487 -5.4094 14 8 2.7839 2.4081 -4.9895 15 6 2.6704 0.7931 -6.7067 16 16 1.4380 1.9282 -7.3915 17 6 1.0011 1.0564 -8.8591 18 1 1.4733 0.1121 -9.0870 19 6 0.0501 1.5830 -9.7221 20 7 -0.5250 2.7340 -9.4444 21 14 -0.4125 0.6591 -11.2783 22 1 0.3728 -0.5987 -11.3592 23 1 -1.8619 0.3374 -11.2505 24 1 -0.1157 1.5043 -12.4626 25 6 4.6010 1.2495 -3.4812 26 1 4.8930 2.2809 -3.6788 27 6 3.4865 1.2835 -2.4257 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.6886 1.8463 0.8900 32 1 1.6885 1.8464 -0.8899 33 1 3.8525 0.5813 0.8499 34 1 3.9786 2.1778 0.0732 35 1 5.8239 -0.4200 -0.8805 36 1 5.8794 1.3662 -0.8253 37 1 6.7128 -0.1954 -5.1286 38 1 6.2825 -1.9230 -5.0106 39 1 4.6315 -0.5264 -6.3576 40 1 3.9063 -1.3930 -4.9821 41 1 3.4915 0.6778 -7.4141 42 1 2.2085 -0.1774 -6.5249 43 1 -1.1898 3.1019 -10.0474 44 1 3.2685 2.3153 -2.1498 45 1 2.5892 0.8052 -2.8185 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001217331520.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:21 Heat of formation + Delta-G solvation = -96.418557 kcal Electronic energy + Delta-G solvation = -27122.225250 eV Core-core repulsion = 23267.083313 eV Total energy + Delta-G solvation = -3855.141937 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.02515 -38.76988 -38.11448 -36.94487 -34.86273 -32.61359 -32.44760 -30.04457 -29.40888 -28.21599 -27.38554 -26.08834 -25.49049 -23.69745 -23.04787 -21.05468 -20.94801 -18.88935 -17.73001 -17.51763 -17.04612 -16.60859 -16.59164 -15.97704 -15.58206 -15.35106 -14.83862 -14.81523 -14.79752 -14.41754 -14.28151 -13.99656 -13.45387 -13.15135 -13.04211 -12.89858 -12.67987 -12.54968 -12.19922 -11.99364 -11.83721 -11.61622 -11.59509 -11.39890 -11.08426 -11.03384 -11.02653 -10.79609 -10.76312 -10.05122 -9.82061 -9.70092 -9.35885 -9.09143 -8.60462 -8.39156 -8.25058 -6.52595 -6.23796 -3.94442 2.76684 2.97383 3.20349 3.22853 3.29429 3.45247 3.54881 3.66908 3.80865 4.18032 4.26030 4.33327 4.64613 4.75136 4.82826 4.90081 4.98202 4.99911 5.10037 5.11639 5.12708 5.20983 5.25377 5.27498 5.32537 5.36861 5.38924 5.47601 5.50988 5.63254 5.64586 5.67065 5.73829 5.79579 5.87630 6.01466 6.09851 6.64219 6.75628 6.83201 6.96792 7.13723 7.39066 7.58162 8.33513 8.47961 9.21881 10.83707 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.013234 B = 0.003274 C = 0.002836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2115.308263 B = 8550.644865 C = 9871.312855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.375 6.375 3 C 0.060 3.940 4 C 0.052 3.948 5 N -0.510 5.510 6 C 0.048 3.952 7 C 0.088 3.912 8 H 0.076 0.924 9 O -0.362 6.362 10 C 0.051 3.949 11 C 0.079 3.921 12 N -0.602 5.602 13 C 0.529 3.471 14 O -0.512 6.512 15 C -0.150 4.150 16 S -0.061 6.061 17 C -0.534 4.534 18 H 0.073 0.927 19 C 0.074 3.926 20 N -0.868 5.868 21 Si 0.919 3.081 22 H -0.271 1.271 23 H -0.280 1.280 24 H -0.280 1.280 25 C 0.118 3.882 26 H 0.082 0.918 27 C 0.041 3.959 28 H 0.085 0.915 29 H 0.036 0.964 30 H 0.043 0.957 31 H 0.051 0.949 32 H 0.054 0.946 33 H 0.086 0.914 34 H 0.050 0.950 35 H 0.097 0.903 36 H 0.058 0.942 37 H 0.059 0.941 38 H 0.111 0.889 39 H 0.091 0.909 40 H 0.075 0.925 41 H 0.090 0.910 42 H 0.091 0.909 43 H 0.268 0.732 44 H 0.056 0.944 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.683 -5.785 17.502 22.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.293 6.293 3 C -0.017 4.017 4 C -0.076 4.076 5 N -0.235 5.235 6 C -0.080 4.080 7 C 0.029 3.971 8 H 0.094 0.906 9 O -0.280 6.280 10 C -0.026 4.026 11 C -0.045 4.045 12 N -0.339 5.339 13 C 0.317 3.683 14 O -0.385 6.385 15 C -0.300 4.300 16 S 0.165 5.835 17 C -0.683 4.683 18 H 0.091 0.909 19 C -0.135 4.135 20 N -0.503 5.503 21 Si 0.745 3.255 22 H -0.196 1.196 23 H -0.205 1.205 24 H -0.206 1.206 25 C 0.012 3.988 26 H 0.100 0.900 27 C -0.088 4.088 28 H 0.103 0.897 29 H 0.055 0.945 30 H 0.061 0.939 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.104 0.896 34 H 0.068 0.932 35 H 0.115 0.885 36 H 0.076 0.924 37 H 0.078 0.922 38 H 0.129 0.871 39 H 0.109 0.891 40 H 0.093 0.907 41 H 0.108 0.892 42 H 0.109 0.891 43 H 0.078 0.922 44 H 0.074 0.926 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 11.877 -4.921 18.227 22.305 hybrid contribution 0.153 -0.514 -1.727 1.808 sum 12.030 -5.434 16.500 21.131 Atomic orbital electron populations 1.22744 0.81407 1.02722 0.99831 1.87983 1.19141 1.26885 1.95288 1.22616 0.93146 0.85599 1.00360 1.22309 0.94042 0.97660 0.93576 1.63886 1.07825 1.50266 1.01494 1.22991 0.88856 1.02514 0.93604 1.22689 0.95840 0.84325 0.94289 0.90621 1.87983 1.93671 1.25402 1.20955 1.22990 0.95275 1.03103 0.81233 1.22086 0.96863 0.86136 0.99376 1.46928 1.42710 1.22430 1.21797 1.20457 0.78168 0.84272 0.85434 1.90688 1.56782 1.21760 1.69310 1.23577 1.04603 1.05630 0.96221 1.85380 1.45421 1.27184 1.25473 1.22899 1.27876 1.09542 1.07938 0.90859 1.24987 0.95124 0.95109 0.98319 1.70026 1.25878 1.17392 1.37005 0.86118 0.78403 0.79474 0.81521 1.19575 1.20543 1.20574 1.21124 0.94513 0.97745 0.85415 0.90048 1.23158 0.98792 0.97127 0.89719 0.89685 0.94519 0.93878 0.93044 0.92803 0.89610 0.93179 0.88461 0.92417 0.92249 0.87112 0.89068 0.90710 0.89207 0.89094 0.92240 0.92611 0.89503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 11.01 101.05 1.11 1.42 16 2 O -0.37 -4.89 10.64 -35.23 -0.37 -5.26 16 3 C 0.06 0.66 5.86 37.16 0.22 0.87 16 4 C 0.05 0.52 5.16 -3.83 -0.02 0.51 16 5 N -0.51 -6.22 5.24 -232.27 -1.22 -7.44 16 6 C 0.05 0.48 6.38 -2.73 -0.02 0.46 16 7 C 0.09 0.95 3.70 -26.26 -0.10 0.85 16 8 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 9 O -0.36 -4.21 10.27 -35.23 -0.36 -4.58 16 10 C 0.05 0.49 7.01 37.28 0.26 0.75 16 11 C 0.08 0.93 5.94 -4.34 -0.03 0.90 16 12 N -0.60 -8.98 2.88 -168.15 -0.48 -9.46 16 13 C 0.53 10.04 7.12 -10.99 -0.08 9.96 16 14 O -0.51 -11.37 14.89 5.56 0.08 -11.29 16 15 C -0.15 -3.03 4.68 36.01 0.17 -2.86 16 16 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 17 C -0.53 -15.10 9.50 30.94 0.29 -14.81 16 18 H 0.07 1.96 7.80 -52.48 -0.41 1.55 16 19 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 20 N -0.87 -26.01 13.22 55.49 0.73 -25.27 16 21 Si 0.92 21.28 29.55 -169.99 -5.02 16.25 16 22 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 23 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 24 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 25 C 0.12 1.59 2.78 -69.07 -0.19 1.40 16 26 H 0.08 1.14 7.87 -51.93 -0.41 0.73 16 27 C 0.04 0.57 4.32 -3.20 -0.01 0.56 16 28 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 29 H 0.04 0.32 8.14 -51.93 -0.42 -0.11 16 30 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.05 0.66 6.61 -51.93 -0.34 0.31 16 33 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.05 0.42 7.98 -51.93 -0.41 0.01 16 35 H 0.10 0.96 8.04 -51.93 -0.42 0.54 16 36 H 0.06 0.45 7.75 -51.93 -0.40 0.05 16 37 H 0.06 0.51 8.09 -51.93 -0.42 0.09 16 38 H 0.11 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.09 1.00 6.38 -51.93 -0.33 0.67 16 40 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 41 H 0.09 1.66 7.25 -51.92 -0.38 1.28 16 42 H 0.09 1.74 8.04 -51.91 -0.42 1.32 16 43 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 44 H 0.06 0.78 7.15 -51.93 -0.37 0.41 16 45 H 0.09 1.50 7.66 -51.93 -0.40 1.10 16 LS Contribution 371.62 15.07 5.60 5.60 Total: -1.00 -34.97 371.62 -8.97 -43.94 By element: Atomic # 1 Polarization: 6.58 SS G_CDS: -7.23 Total: -0.65 kcal Atomic # 6 Polarization: 0.50 SS G_CDS: 1.51 Total: 2.02 kcal Atomic # 7 Polarization: -41.21 SS G_CDS: -0.97 Total: -42.17 kcal Atomic # 8 Polarization: -20.48 SS G_CDS: -0.65 Total: -21.13 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.25 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -34.97 -8.97 -43.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001217331520.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.475 kcal (2) G-P(sol) polarization free energy of solvation -34.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds