Wall clock time and date at job start Tue Mar 31 2020 05:44:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42904 * 113.99921 * 2 1 4 4 C 1.52999 * 109.46971 * 180.02562 * 3 2 1 5 5 N 1.46895 * 109.47627 * 64.11710 * 4 3 2 6 6 C 1.47620 * 111.00605 * 175.79611 * 5 4 3 7 7 C 1.54329 * 105.66248 * 209.02075 * 6 5 4 8 8 H 1.09005 * 109.99354 * 145.39931 * 7 6 5 9 9 O 1.42290 * 108.84246 * 265.94677 * 7 6 5 10 10 C 1.43187 * 113.95886 * 168.61485 * 9 7 6 11 11 C 1.53242 * 107.38136 * 289.63809 * 10 9 7 12 12 N 1.45707 * 109.35522 * 51.63293 * 11 10 9 13 13 C 1.34777 * 117.50482 * 155.98903 * 12 11 10 14 14 O 1.21281 * 120.00090 * 180.02562 * 13 12 11 15 15 C 1.50700 * 120.00088 * 0.02562 * 13 12 11 16 16 S 1.81002 * 109.47377 * 179.97438 * 15 13 12 17 17 C 1.76200 * 100.00216 * 180.02562 * 16 15 13 18 18 H 1.08004 * 119.99500 * 359.97438 * 17 16 15 19 19 C 1.38798 * 119.99942 * 179.97438 * 17 16 15 20 20 N 1.31627 * 120.00073 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99685 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47348 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.46901 * 120.00130 * 21 19 17 24 24 H 1.48498 * 109.47279 * 239.99978 * 21 19 17 25 25 C 1.44262 * 124.99103 * 335.99344 * 12 11 10 26 26 H 1.08995 * 108.23106 * 128.95623 * 25 12 11 27 27 C 1.47520 * 111.08375 * 56.17725 * 5 4 3 28 28 H 1.09007 * 109.46861 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47012 * 299.99885 * 1 2 3 30 30 H 1.08990 * 109.47237 * 59.99969 * 1 2 3 31 31 H 1.08994 * 109.46873 * 60.00197 * 3 2 1 32 32 H 1.08997 * 109.46966 * 300.00246 * 3 2 1 33 33 H 1.08997 * 109.47068 * 304.11136 * 4 3 2 34 34 H 1.09004 * 109.46924 * 184.11836 * 4 3 2 35 35 H 1.08993 * 110.22532 * 89.94498 * 6 5 4 36 36 H 1.09007 * 110.21818 * 328.09041 * 6 5 4 37 37 H 1.09002 * 109.87555 * 49.10969 * 10 9 7 38 38 H 1.08999 * 109.87652 * 170.09713 * 10 9 7 39 39 H 1.08996 * 109.49496 * 171.59776 * 11 10 9 40 40 H 1.09001 * 109.49524 * 291.64975 * 11 10 9 41 41 H 1.08999 * 109.47565 * 300.00441 * 15 13 12 42 42 H 1.09009 * 109.47049 * 60.00117 * 15 13 12 43 43 H 0.97000 * 119.99774 * 180.02562 * 20 19 17 44 44 H 1.09001 * 109.80630 * 22.74050 * 27 5 4 45 45 H 1.09003 * 109.91971 * 261.60031 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9754 0.5436 -1.2469 6 6 5.4488 0.5002 -1.3282 7 6 5.7842 0.5363 -2.8342 8 1 6.7059 1.0949 -2.9974 9 8 5.9352 -0.7985 -3.3034 10 6 5.9931 -0.9103 -4.7297 11 6 4.5938 -0.5978 -5.2706 12 7 4.1333 0.6684 -4.7159 13 6 3.1991 1.3487 -5.4094 14 8 2.7839 2.4081 -4.9895 15 6 2.6704 0.7931 -6.7067 16 16 1.4380 1.9282 -7.3915 17 6 1.0011 1.0564 -8.8591 18 1 1.4733 0.1121 -9.0870 19 6 0.0501 1.5830 -9.7221 20 7 -0.5250 2.7340 -9.4444 21 14 -0.4125 0.6591 -11.2783 22 1 0.3728 -0.5987 -11.3592 23 1 -1.8619 0.3374 -11.2505 24 1 -0.1157 1.5043 -12.4626 25 6 4.6010 1.2495 -3.4812 26 1 4.8930 2.2809 -3.6788 27 6 3.4865 1.2835 -2.4257 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.6886 1.8463 0.8900 32 1 1.6885 1.8464 -0.8899 33 1 3.8525 0.5813 0.8499 34 1 3.9786 2.1778 0.0732 35 1 5.8239 -0.4200 -0.8805 36 1 5.8794 1.3662 -0.8253 37 1 6.7128 -0.1954 -5.1286 38 1 6.2825 -1.9230 -5.0106 39 1 4.6315 -0.5264 -6.3576 40 1 3.9063 -1.3930 -4.9821 41 1 3.4915 0.6778 -7.4141 42 1 2.2085 -0.1774 -6.5249 43 1 -1.1898 3.1019 -10.0474 44 1 3.2685 2.3153 -2.1498 45 1 2.5892 0.8052 -2.8185 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001217331520.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:20 Heat of formation + Delta-G solvation = -123.756269 kcal Electronic energy + Delta-G solvation = -27123.410702 eV Core-core repulsion = 23267.083313 eV Total energy + Delta-G solvation = -3856.327389 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.12765 -39.98928 -39.08511 -37.85864 -36.11496 -34.59968 -33.53881 -31.36026 -30.39407 -29.27945 -28.46506 -27.65246 -26.96327 -24.66424 -23.98469 -22.19685 -21.84353 -20.25189 -19.48016 -18.57867 -18.26415 -17.70288 -17.52590 -17.10703 -16.89498 -16.57479 -16.44277 -16.00587 -15.86172 -15.62865 -15.44539 -15.22522 -14.66208 -14.54935 -14.29467 -14.06669 -13.82004 -13.53185 -13.42778 -13.18371 -13.07350 -12.92916 -12.85687 -12.60160 -12.54428 -12.45760 -12.24542 -11.90075 -11.72713 -11.67358 -11.19013 -11.16851 -10.69112 -10.59152 -10.29192 -9.80421 -9.31661 -8.69405 -8.36255 -6.14650 1.20496 1.40738 1.42164 1.46769 1.55651 1.92309 2.25497 2.67314 2.80594 2.96060 2.98341 3.15001 3.35862 3.44427 3.66613 3.80193 3.92262 3.93925 4.09511 4.13994 4.15974 4.22047 4.31764 4.34499 4.41851 4.42934 4.47188 4.49212 4.53836 4.58296 4.61813 4.78449 4.80074 4.81930 4.83817 4.90781 4.92757 5.40876 5.51231 5.81236 5.94640 6.07483 6.16172 6.18897 6.27153 7.03292 7.05411 8.73268 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.013234 B = 0.003274 C = 0.002836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2115.308263 B = 8550.644865 C = 9871.312855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.399 6.399 3 C 0.056 3.944 4 C 0.052 3.948 5 N -0.527 5.527 6 C 0.050 3.950 7 C 0.092 3.908 8 H 0.104 0.896 9 O -0.375 6.375 10 C 0.055 3.945 11 C 0.067 3.933 12 N -0.589 5.589 13 C 0.527 3.473 14 O -0.554 6.554 15 C -0.123 4.123 16 S -0.148 6.148 17 C -0.545 4.545 18 H 0.083 0.917 19 C 0.015 3.985 20 N -0.911 5.911 21 Si 0.999 3.001 22 H -0.256 1.256 23 H -0.275 1.275 24 H -0.273 1.273 25 C 0.111 3.889 26 H 0.074 0.926 27 C 0.053 3.947 28 H 0.093 0.907 29 H 0.057 0.943 30 H 0.028 0.972 31 H 0.075 0.925 32 H 0.031 0.969 33 H 0.099 0.901 34 H 0.071 0.929 35 H 0.103 0.897 36 H 0.085 0.915 37 H 0.074 0.926 38 H 0.140 0.860 39 H 0.103 0.897 40 H 0.072 0.928 41 H 0.112 0.888 42 H 0.103 0.897 43 H 0.271 0.729 44 H 0.048 0.952 45 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.904 -7.660 17.803 24.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.318 6.318 3 C -0.021 4.021 4 C -0.075 4.075 5 N -0.253 5.253 6 C -0.077 4.077 7 C 0.033 3.967 8 H 0.121 0.879 9 O -0.293 6.293 10 C -0.021 4.021 11 C -0.055 4.055 12 N -0.324 5.324 13 C 0.315 3.685 14 O -0.431 6.431 15 C -0.274 4.274 16 S 0.079 5.921 17 C -0.693 4.693 18 H 0.101 0.899 19 C -0.190 4.190 20 N -0.548 5.548 21 Si 0.820 3.180 22 H -0.179 1.179 23 H -0.200 1.200 24 H -0.199 1.199 25 C 0.006 3.994 26 H 0.092 0.908 27 C -0.076 4.076 28 H 0.112 0.888 29 H 0.076 0.924 30 H 0.047 0.953 31 H 0.093 0.907 32 H 0.049 0.951 33 H 0.117 0.883 34 H 0.089 0.911 35 H 0.121 0.879 36 H 0.103 0.897 37 H 0.092 0.908 38 H 0.158 0.842 39 H 0.121 0.879 40 H 0.090 0.910 41 H 0.130 0.870 42 H 0.121 0.879 43 H 0.080 0.920 44 H 0.066 0.934 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 14.140 -6.834 18.554 24.308 hybrid contribution -0.497 0.030 -1.710 1.781 sum 13.643 -6.804 16.844 22.719 Atomic orbital electron populations 1.22845 0.80516 1.03460 1.00139 1.87936 1.20335 1.28153 1.95401 1.22742 0.94036 0.84918 1.00363 1.22403 0.93258 0.98938 0.92904 1.63823 1.09594 1.50428 1.01406 1.23094 0.87289 1.04017 0.93309 1.22822 0.95378 0.84184 0.94320 0.87856 1.87978 1.93520 1.25715 1.22088 1.23165 0.93561 1.05241 0.80141 1.22421 0.98611 0.84313 1.00180 1.46901 1.41004 1.22784 1.21672 1.20281 0.78896 0.84051 0.85309 1.90670 1.58552 1.23704 1.70203 1.23387 1.03069 1.03849 0.97122 1.85553 1.48816 1.30971 1.26766 1.23226 1.28243 1.09827 1.08013 0.89886 1.26114 0.94802 0.95961 1.02124 1.70186 1.26655 1.19325 1.38619 0.84909 0.78209 0.78400 0.76464 1.17941 1.19998 1.19852 1.21330 0.95539 0.97988 0.84574 0.90751 1.22851 0.97493 0.96308 0.90922 0.88817 0.92432 0.95301 0.90683 0.95079 0.88271 0.91110 0.87909 0.89663 0.90788 0.84240 0.87925 0.90988 0.86958 0.87886 0.91985 0.93406 0.93688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.57 11.01 113.37 1.25 1.82 16 2 O -0.40 -10.49 10.64 -148.98 -1.58 -12.08 16 3 C 0.06 1.23 5.86 71.98 0.42 1.65 16 4 C 0.05 0.98 5.16 86.30 0.45 1.43 16 5 N -0.53 -12.37 5.24 -888.77 -4.66 -17.03 16 6 C 0.05 0.86 6.38 86.62 0.55 1.41 16 7 C 0.09 1.76 3.70 30.90 0.11 1.87 16 8 H 0.10 1.45 8.14 -2.38 -0.02 1.43 16 9 O -0.37 -7.60 10.27 -148.98 -1.53 -9.14 16 10 C 0.06 0.87 7.01 72.06 0.51 1.38 16 11 C 0.07 1.46 5.94 86.61 0.51 1.97 16 12 N -0.59 -17.30 2.88 -804.31 -2.32 -19.62 16 13 C 0.53 20.43 7.12 87.66 0.62 21.06 16 14 O -0.55 -25.85 14.89 -3.03 -0.05 -25.89 16 15 C -0.12 -5.02 4.68 71.24 0.33 -4.68 16 16 S -0.15 -8.28 20.57 -56.49 -1.16 -9.44 16 17 C -0.55 -31.13 9.50 67.95 0.65 -30.48 16 18 H 0.08 4.40 7.80 -2.91 -0.02 4.38 16 19 C 0.01 0.84 5.49 84.86 0.47 1.30 16 20 N -0.91 -55.93 13.22 21.65 0.29 -55.64 16 21 Si 1.00 43.48 29.55 68.60 2.03 45.51 16 22 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 23 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 24 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 25 C 0.11 2.94 2.78 45.44 0.13 3.07 16 26 H 0.07 2.08 7.87 -2.39 -0.02 2.06 16 27 C 0.05 1.54 4.32 86.37 0.37 1.91 16 28 H 0.09 1.76 8.14 -2.38 -0.02 1.74 16 29 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.03 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.03 0.81 6.61 -2.39 -0.02 0.79 16 33 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.07 1.04 7.98 -2.39 -0.02 1.02 16 35 H 0.10 1.71 8.04 -2.39 -0.02 1.69 16 36 H 0.09 1.02 7.75 -2.38 -0.02 1.00 16 37 H 0.07 0.99 8.09 -2.39 -0.02 0.97 16 38 H 0.14 1.43 8.14 -2.39 -0.02 1.41 16 39 H 0.10 2.00 6.38 -2.39 -0.02 1.99 16 40 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 41 H 0.11 4.03 7.25 -2.40 -0.02 4.02 16 42 H 0.10 3.92 8.04 -2.39 -0.02 3.90 16 43 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 44 H 0.05 1.41 7.15 -2.39 -0.02 1.39 16 45 H 0.04 1.66 7.66 -2.39 -0.02 1.64 16 Total: -1.00 -79.29 371.62 -1.64 -80.93 By element: Atomic # 1 Polarization: 17.70 SS G_CDS: 0.97 Total: 18.68 kcal Atomic # 6 Polarization: -2.66 SS G_CDS: 6.37 Total: 3.71 kcal Atomic # 7 Polarization: -85.60 SS G_CDS: -6.69 Total: -92.29 kcal Atomic # 8 Polarization: -43.94 SS G_CDS: -3.16 Total: -47.10 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.51 kcal Atomic # 16 Polarization: -8.28 SS G_CDS: -1.16 Total: -9.44 kcal Total: -79.29 -1.64 -80.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001217331520.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.822 kcal (2) G-P(sol) polarization free energy of solvation -79.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds