Wall clock time and date at job start Tue Mar 31 2020 05:11:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46269 * 118.72014 * 2 1 4 4 C 1.52561 * 109.56450 * 163.93345 * 3 2 1 5 5 C 1.53388 * 113.84114 * 176.54281 * 4 3 2 6 6 N 1.47682 * 85.96198 * 138.03271 * 5 4 3 7 7 C 1.34776 * 134.45446 * 155.76149 * 6 5 4 8 8 O 1.21553 * 119.99946 * 177.14694 * 7 6 5 9 9 C 1.47884 * 119.99942 * 357.15921 * 7 6 5 10 10 C 1.39915 * 120.02627 * 7.84477 * 9 7 6 11 11 C 1.38332 * 120.35804 * 179.71877 * 10 9 7 12 12 C 1.37754 * 120.40862 * 0.56430 * 11 10 9 13 13 C 1.40750 * 120.04051 * 359.72022 * 12 11 10 14 14 C 1.41441 * 120.17432 * 180.02562 * 13 12 11 15 15 H 1.07997 * 120.00233 * 335.22881 * 14 13 12 16 16 C 1.39934 * 119.99684 * 155.22987 * 14 13 12 17 17 N 1.30825 * 120.00271 * 344.96278 * 16 14 13 18 18 Si 1.86804 * 120.00096 * 164.95776 * 16 14 13 19 19 H 1.48499 * 109.46840 * 60.00256 * 18 16 14 20 20 H 1.48492 * 109.47719 * 180.02562 * 18 16 14 21 21 H 1.48505 * 109.47046 * 300.00495 * 18 16 14 22 22 C 1.38999 * 120.02292 * 188.12654 * 9 7 6 23 23 C 1.47685 * 91.09274 * 335.74732 * 6 5 4 24 24 O 1.42687 * 112.47230 * 45.22870 * 4 3 2 25 25 C 1.43041 * 112.94798 * 295.89506 * 24 4 3 26 26 C 1.33723 * 118.71378 * 180.02562 * 2 1 3 27 27 O 1.21283 * 118.38278 * 3.19185 * 26 2 1 28 28 H 1.09003 * 109.47753 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47093 * 299.97977 * 1 2 3 30 30 H 1.09002 * 109.47311 * 59.97918 * 1 2 3 31 31 H 1.09003 * 109.45246 * 283.97793 * 3 2 1 32 32 H 1.08995 * 109.45722 * 43.93517 * 3 2 1 33 33 H 1.08996 * 113.79584 * 252.29491 * 5 4 3 34 34 H 1.09000 * 113.79276 * 23.77146 * 5 4 3 35 35 H 1.07998 * 119.82208 * 359.97438 * 10 9 7 36 36 H 1.08004 * 119.79414 * 180.25592 * 11 10 9 37 37 H 1.08003 * 119.97662 * 179.69369 * 12 11 10 38 38 H 0.97006 * 119.99922 * 179.97438 * 17 16 14 39 39 H 1.07997 * 120.20009 * 0.02562 * 22 9 7 40 40 H 1.08996 * 113.79755 * 269.98751 * 23 6 5 41 41 H 1.09000 * 113.79768 * 138.50853 * 23 6 5 42 42 H 1.08997 * 109.34649 * 167.52837 * 25 24 4 43 43 H 1.09002 * 109.34524 * 287.07784 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1678 1.2827 0.0000 4 6 3.6247 1.0670 0.3978 5 6 4.4763 2.3418 0.3484 6 7 5.0649 1.8728 1.6191 7 6 6.2331 2.0900 2.2551 8 8 6.4317 1.5948 3.3473 9 6 7.2732 2.9311 1.6244 10 6 6.9874 3.6339 0.4488 11 6 7.9534 4.4272 -0.1438 12 6 9.2109 4.5255 0.4099 13 6 9.5186 3.8211 1.5890 14 6 10.8088 3.9203 2.1602 15 1 11.6552 4.1781 1.5410 16 6 10.9884 3.6845 3.5278 17 7 9.9547 3.6641 4.3294 18 14 12.7042 3.3986 4.2089 19 1 13.5496 4.5886 3.9360 20 1 12.6240 3.1735 5.6744 21 1 13.3030 2.2060 3.5573 22 6 8.5372 3.0194 2.1959 23 6 3.8604 1.0705 1.9136 24 8 4.2144 -0.0456 -0.2734 25 6 3.6026 -1.2922 0.0699 26 6 2.1074 -1.1728 -0.0005 27 8 1.4500 -2.1902 -0.0604 28 1 -0.3635 -1.0277 -0.0005 29 1 -0.3633 0.5135 0.8902 30 1 -0.3634 0.5142 -0.8898 31 1 2.1245 1.7204 -0.9974 32 1 1.6932 1.9568 0.7131 33 1 5.1830 2.3667 -0.4809 34 1 3.8981 3.2608 0.4444 35 1 6.0061 3.5599 0.0039 36 1 7.7216 4.9691 -1.0489 37 1 9.9613 5.1430 -0.0613 38 1 10.0793 3.5002 5.2774 39 1 8.7636 2.4747 3.1005 40 1 3.0989 1.6108 2.4759 41 1 4.0782 0.0858 2.3271 42 1 3.9366 -2.0620 -0.6257 43 1 3.8954 -1.5715 1.0821 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271660607.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:42 Heat of formation + Delta-G solvation = -25.688366 kcal Electronic energy + Delta-G solvation = -28119.722006 eV Core-core repulsion = 24132.203209 eV Total energy + Delta-G solvation = -3987.518797 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.141 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.60803 -39.83727 -38.30956 -36.95739 -36.18132 -35.77029 -33.74801 -30.96125 -29.90564 -29.43847 -29.18074 -27.01662 -26.54838 -25.76014 -25.13671 -22.59111 -21.22470 -20.95492 -19.12885 -18.95299 -17.92135 -17.64534 -17.04951 -16.59650 -16.15239 -15.85187 -15.61240 -15.15851 -14.90069 -14.77204 -14.68928 -14.24543 -13.65339 -13.62087 -13.39301 -13.23518 -12.92596 -12.76224 -12.64410 -12.59701 -12.46280 -12.22808 -11.90652 -11.68197 -11.42058 -11.14337 -11.04386 -10.76302 -10.57042 -10.35184 -10.05278 -9.76589 -9.66007 -9.24437 -9.20358 -9.00423 -8.53444 -7.65872 -7.52387 -6.78570 -4.43724 2.14647 2.16413 2.43184 2.80565 2.94216 3.06558 3.07036 3.08414 3.15057 3.71909 3.89417 3.90364 3.92900 4.29694 4.57208 4.62672 4.82089 4.89092 4.94979 5.01765 5.07790 5.17656 5.19981 5.24885 5.36220 5.44977 5.48061 5.51586 5.60538 5.87774 5.98458 6.19596 6.27896 6.51922 6.71036 6.93162 6.96827 7.01445 7.20637 7.35914 7.66138 7.66340 7.76845 7.89367 8.02342 8.15658 8.48584 8.77302 8.80986 8.84352 10.14697 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.024288 B = 0.002745 C = 0.002620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.564373 B =10197.337198 C =10684.913907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.607 5.607 3 C 0.102 3.898 4 C 0.054 3.946 5 C 0.126 3.874 6 N -0.639 5.639 7 C 0.591 3.409 8 O -0.539 6.539 9 C -0.123 4.123 10 C -0.230 4.230 11 C -0.099 4.099 12 C -0.210 4.210 13 C 0.098 3.902 14 C -0.459 4.459 15 H 0.081 0.919 16 C 0.071 3.929 17 N -0.786 5.786 18 Si 0.912 3.088 19 H -0.265 1.265 20 H -0.277 1.277 21 H -0.263 1.263 22 C -0.092 4.092 23 C 0.087 3.913 24 O -0.331 6.331 25 C 0.048 3.952 26 C 0.491 3.509 27 O -0.545 6.545 28 H 0.091 0.909 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.086 0.914 32 H 0.095 0.905 33 H 0.112 0.888 34 H 0.104 0.896 35 H 0.105 0.895 36 H 0.093 0.907 37 H 0.095 0.905 38 H 0.285 0.715 39 H 0.136 0.864 40 H 0.092 0.908 41 H 0.084 0.916 42 H 0.136 0.864 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.860 -2.972 -7.762 17.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.341 5.341 3 C -0.021 4.021 4 C 0.013 3.987 5 C 0.002 3.998 6 N -0.376 5.376 7 C 0.386 3.614 8 O -0.416 6.416 9 C -0.126 4.126 10 C -0.249 4.249 11 C -0.118 4.118 12 C -0.230 4.230 13 C 0.095 3.905 14 C -0.488 4.488 15 H 0.099 0.901 16 C -0.147 4.147 17 N -0.411 5.411 18 Si 0.736 3.264 19 H -0.190 1.190 20 H -0.202 1.202 21 H -0.187 1.187 22 C -0.112 4.112 23 C -0.037 4.037 24 O -0.248 6.248 25 C -0.031 4.031 26 C 0.279 3.721 27 O -0.423 6.423 28 H 0.110 0.890 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.104 0.896 32 H 0.113 0.887 33 H 0.130 0.870 34 H 0.122 0.878 35 H 0.123 0.877 36 H 0.111 0.889 37 H 0.114 0.886 38 H 0.096 0.904 39 H 0.154 0.846 40 H 0.110 0.890 41 H 0.102 0.898 42 H 0.153 0.847 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -15.763 -3.739 -6.934 17.622 hybrid contribution 0.451 0.069 0.577 0.736 sum -15.312 -3.670 -6.356 16.981 Atomic orbital electron populations 1.21787 0.78882 1.04744 1.01620 1.47355 1.07653 1.05951 1.73149 1.22004 0.90884 0.85589 1.03668 1.23218 0.91704 0.90544 0.93243 1.23279 0.94022 0.93423 0.89026 1.49665 1.14949 1.49841 1.23181 1.18623 0.79837 0.79363 0.83588 1.90725 1.79031 1.51536 1.20342 1.19358 0.94262 1.01403 0.97623 1.20904 0.99446 1.06052 0.98502 1.20457 0.94103 0.98797 0.98420 1.21127 0.96157 1.04621 1.01085 1.17592 0.93135 0.88914 0.90846 1.19565 0.94300 1.41700 0.93241 0.90136 1.25972 0.99041 0.92476 0.97244 1.69768 1.31881 1.33657 1.05759 0.86299 0.82011 0.80025 0.78027 1.18957 1.20229 1.18746 1.21703 0.90875 0.98278 1.00315 1.23592 0.87667 0.97633 0.94762 1.88207 1.57481 1.13314 1.65823 1.22815 0.87393 0.88187 1.04722 1.20951 0.91830 0.83341 0.76016 1.90728 1.67003 1.34527 1.50078 0.89037 0.91840 0.91895 0.89597 0.88727 0.86991 0.87824 0.87745 0.88890 0.88643 0.90398 0.84621 0.88991 0.89804 0.84683 0.88814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.50 10.58 59.84 0.63 1.13 16 2 N -0.61 -5.39 3.23 -182.57 -0.59 -5.98 16 3 C 0.10 0.71 5.91 -4.39 -0.03 0.69 16 4 C 0.05 0.55 1.16 -90.54 -0.10 0.44 16 5 C 0.13 1.42 5.92 -3.20 -0.02 1.40 16 6 N -0.64 -10.32 3.61 -182.18 -0.66 -10.98 16 7 C 0.59 13.00 7.99 -12.31 -0.10 12.90 16 8 O -0.54 -13.75 17.09 5.32 0.09 -13.66 16 9 C -0.12 -2.89 5.87 -105.04 -0.62 -3.51 16 10 C -0.23 -4.66 9.13 -38.92 -0.36 -5.01 16 11 C -0.10 -2.06 10.01 -39.72 -0.40 -2.45 16 12 C -0.21 -4.90 9.78 -38.81 -0.38 -5.28 16 13 C 0.10 2.56 5.58 -106.87 -0.60 1.97 16 14 C -0.46 -11.99 9.07 -37.73 -0.34 -12.33 16 15 H 0.08 1.99 7.89 -52.49 -0.41 1.57 16 16 C 0.07 1.80 5.20 -17.35 -0.09 1.71 16 17 N -0.79 -20.83 10.81 55.55 0.60 -20.23 16 18 Si 0.91 18.75 29.59 -169.99 -5.03 13.73 16 19 H -0.26 -5.31 7.11 56.52 0.40 -4.91 16 20 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 21 H -0.26 -5.37 7.11 56.52 0.40 -4.96 16 22 C -0.09 -2.43 8.23 -38.44 -0.32 -2.75 16 23 C 0.09 1.05 7.95 -3.19 -0.03 1.03 16 24 O -0.33 -3.92 10.66 -35.23 -0.38 -4.30 16 25 C 0.05 0.50 6.65 35.75 0.24 0.74 16 26 C 0.49 5.53 7.58 -11.71 -0.09 5.44 16 27 O -0.55 -7.79 16.06 5.55 0.09 -7.70 16 28 H 0.09 0.79 6.68 -51.93 -0.35 0.45 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.09 0.46 7.87 -51.93 -0.41 0.05 16 33 H 0.11 1.34 6.28 -51.93 -0.33 1.02 16 34 H 0.10 0.85 8.10 -51.93 -0.42 0.43 16 35 H 0.10 1.69 3.76 -52.49 -0.20 1.49 16 36 H 0.09 1.60 8.06 -52.48 -0.42 1.18 16 37 H 0.10 2.07 8.06 -52.48 -0.42 1.65 16 38 H 0.28 6.97 8.30 -40.82 -0.34 6.63 16 39 H 0.14 3.92 5.67 -52.49 -0.30 3.62 16 40 H 0.09 0.91 7.91 -51.93 -0.41 0.50 16 41 H 0.08 1.09 7.01 -51.93 -0.36 0.72 16 42 H 0.14 1.22 8.14 -51.93 -0.42 0.80 16 43 H 0.09 0.94 7.15 -51.93 -0.37 0.56 16 LS Contribution 354.27 15.07 5.34 5.34 Total: -1.00 -33.83 354.27 -8.35 -42.17 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: -5.23 Total: 5.50 kcal Atomic # 6 Polarization: -1.30 SS G_CDS: -2.58 Total: -3.88 kcal Atomic # 7 Polarization: -36.54 SS G_CDS: -0.65 Total: -37.18 kcal Atomic # 8 Polarization: -25.47 SS G_CDS: -0.20 Total: -25.67 kcal Atomic # 14 Polarization: 18.75 SS G_CDS: -5.03 Total: 13.73 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -33.83 -8.35 -42.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271660607.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.485 kcal (2) G-P(sol) polarization free energy of solvation -33.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds