Wall clock time and date at job start Tue Mar 31 2020 05:11:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46269 * 118.72014 * 2 1 4 4 C 1.52561 * 109.56450 * 163.93345 * 3 2 1 5 5 C 1.53388 * 113.84114 * 176.54281 * 4 3 2 6 6 N 1.47682 * 85.96198 * 138.03271 * 5 4 3 7 7 C 1.34776 * 134.45446 * 155.76149 * 6 5 4 8 8 O 1.21553 * 119.99946 * 177.14694 * 7 6 5 9 9 C 1.47884 * 119.99942 * 357.15921 * 7 6 5 10 10 C 1.39915 * 120.02627 * 7.84477 * 9 7 6 11 11 C 1.38332 * 120.35804 * 179.71877 * 10 9 7 12 12 C 1.37754 * 120.40862 * 0.56430 * 11 10 9 13 13 C 1.40750 * 120.04051 * 359.72022 * 12 11 10 14 14 C 1.41441 * 120.17432 * 180.02562 * 13 12 11 15 15 H 1.07997 * 120.00233 * 335.22881 * 14 13 12 16 16 C 1.39934 * 119.99684 * 155.22987 * 14 13 12 17 17 N 1.30825 * 120.00271 * 344.96278 * 16 14 13 18 18 Si 1.86804 * 120.00096 * 164.95776 * 16 14 13 19 19 H 1.48499 * 109.46840 * 60.00256 * 18 16 14 20 20 H 1.48492 * 109.47719 * 180.02562 * 18 16 14 21 21 H 1.48505 * 109.47046 * 300.00495 * 18 16 14 22 22 C 1.38999 * 120.02292 * 188.12654 * 9 7 6 23 23 C 1.47685 * 91.09274 * 335.74732 * 6 5 4 24 24 O 1.42687 * 112.47230 * 45.22870 * 4 3 2 25 25 C 1.43041 * 112.94798 * 295.89506 * 24 4 3 26 26 C 1.33723 * 118.71378 * 180.02562 * 2 1 3 27 27 O 1.21283 * 118.38278 * 3.19185 * 26 2 1 28 28 H 1.09003 * 109.47753 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47093 * 299.97977 * 1 2 3 30 30 H 1.09002 * 109.47311 * 59.97918 * 1 2 3 31 31 H 1.09003 * 109.45246 * 283.97793 * 3 2 1 32 32 H 1.08995 * 109.45722 * 43.93517 * 3 2 1 33 33 H 1.08996 * 113.79584 * 252.29491 * 5 4 3 34 34 H 1.09000 * 113.79276 * 23.77146 * 5 4 3 35 35 H 1.07998 * 119.82208 * 359.97438 * 10 9 7 36 36 H 1.08004 * 119.79414 * 180.25592 * 11 10 9 37 37 H 1.08003 * 119.97662 * 179.69369 * 12 11 10 38 38 H 0.97006 * 119.99922 * 179.97438 * 17 16 14 39 39 H 1.07997 * 120.20009 * 0.02562 * 22 9 7 40 40 H 1.08996 * 113.79755 * 269.98751 * 23 6 5 41 41 H 1.09000 * 113.79768 * 138.50853 * 23 6 5 42 42 H 1.08997 * 109.34649 * 167.52837 * 25 24 4 43 43 H 1.09002 * 109.34524 * 287.07784 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1678 1.2827 0.0000 4 6 3.6247 1.0670 0.3978 5 6 4.4763 2.3418 0.3484 6 7 5.0649 1.8728 1.6191 7 6 6.2331 2.0900 2.2551 8 8 6.4317 1.5948 3.3473 9 6 7.2732 2.9311 1.6244 10 6 6.9874 3.6339 0.4488 11 6 7.9534 4.4272 -0.1438 12 6 9.2109 4.5255 0.4099 13 6 9.5186 3.8211 1.5890 14 6 10.8088 3.9203 2.1602 15 1 11.6552 4.1781 1.5410 16 6 10.9884 3.6845 3.5278 17 7 9.9547 3.6641 4.3294 18 14 12.7042 3.3986 4.2089 19 1 13.5496 4.5886 3.9360 20 1 12.6240 3.1735 5.6744 21 1 13.3030 2.2060 3.5573 22 6 8.5372 3.0194 2.1959 23 6 3.8604 1.0705 1.9136 24 8 4.2144 -0.0456 -0.2734 25 6 3.6026 -1.2922 0.0699 26 6 2.1074 -1.1728 -0.0005 27 8 1.4500 -2.1902 -0.0604 28 1 -0.3635 -1.0277 -0.0005 29 1 -0.3633 0.5135 0.8902 30 1 -0.3634 0.5142 -0.8898 31 1 2.1245 1.7204 -0.9974 32 1 1.6932 1.9568 0.7131 33 1 5.1830 2.3667 -0.4809 34 1 3.8981 3.2608 0.4444 35 1 6.0061 3.5599 0.0039 36 1 7.7216 4.9691 -1.0489 37 1 9.9613 5.1430 -0.0613 38 1 10.0793 3.5002 5.2774 39 1 8.7636 2.4747 3.1005 40 1 3.0989 1.6108 2.4759 41 1 4.0782 0.0858 2.3271 42 1 3.9366 -2.0620 -0.6257 43 1 3.8954 -1.5715 1.0821 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271660607.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:41 Heat of formation + Delta-G solvation = -50.209627 kcal Electronic energy + Delta-G solvation = -28120.785328 eV Core-core repulsion = 24132.203209 eV Total energy + Delta-G solvation = -3988.582119 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.141 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.52791 -40.97469 -39.70834 -38.62934 -37.32624 -36.54025 -35.57810 -32.49676 -31.33317 -31.05281 -29.94085 -28.18620 -27.61366 -26.85608 -26.41285 -23.96948 -22.77969 -22.35260 -20.51618 -19.86137 -19.28088 -18.77781 -18.00268 -17.61698 -17.51474 -17.07550 -16.81957 -16.55092 -16.26667 -16.07629 -15.82920 -15.24658 -15.05194 -14.88194 -14.47937 -14.39827 -14.31049 -14.17126 -13.98064 -13.48235 -13.40283 -13.29183 -13.02042 -12.91337 -12.80194 -12.78672 -12.54591 -12.34431 -12.00470 -11.89313 -11.53739 -11.27730 -11.08130 -10.81899 -10.50790 -9.88708 -9.82133 -9.44145 -9.33799 -8.63299 -6.38555 0.38883 1.02935 1.31435 1.35199 1.47476 1.49608 1.71932 1.74948 2.06927 2.18802 2.24594 2.79080 3.01955 3.11842 3.52720 3.59855 3.71672 3.92404 4.04878 4.28249 4.28743 4.37162 4.38109 4.43536 4.51861 4.52422 4.57156 4.64438 4.71706 4.73389 4.80136 4.97992 4.99617 5.10227 5.24080 5.25154 5.34986 5.53882 5.71177 5.87888 5.96050 6.07852 6.18603 6.31210 6.50414 6.64916 6.87432 6.88697 6.96345 7.20455 8.31584 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.024288 B = 0.002745 C = 0.002620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.564373 B =10197.337198 C =10684.913907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.604 5.604 3 C 0.107 3.893 4 C 0.067 3.933 5 C 0.120 3.880 6 N -0.642 5.642 7 C 0.582 3.418 8 O -0.595 6.595 9 C -0.136 4.136 10 C -0.205 4.205 11 C -0.097 4.097 12 C -0.215 4.215 13 C 0.064 3.936 14 C -0.498 4.498 15 H 0.084 0.916 16 C 0.026 3.974 17 N -0.829 5.829 18 Si 0.983 3.017 19 H -0.251 1.251 20 H -0.273 1.273 21 H -0.261 1.261 22 C -0.134 4.134 23 C 0.078 3.922 24 O -0.350 6.350 25 C 0.049 3.951 26 C 0.487 3.513 27 O -0.585 6.585 28 H 0.068 0.932 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.114 0.886 32 H 0.131 0.869 33 H 0.111 0.889 34 H 0.153 0.847 35 H 0.156 0.844 36 H 0.143 0.857 37 H 0.108 0.892 38 H 0.285 0.715 39 H 0.097 0.903 40 H 0.125 0.875 41 H 0.067 0.933 42 H 0.143 0.857 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.436 -1.185 -10.367 21.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.336 5.336 3 C -0.016 4.016 4 C 0.026 3.974 5 C -0.001 4.001 6 N -0.376 5.376 7 C 0.375 3.625 8 O -0.478 6.478 9 C -0.140 4.140 10 C -0.224 4.224 11 C -0.115 4.115 12 C -0.235 4.235 13 C 0.062 3.938 14 C -0.528 4.528 15 H 0.102 0.898 16 C -0.188 4.188 17 N -0.455 5.455 18 Si 0.804 3.196 19 H -0.175 1.175 20 H -0.198 1.198 21 H -0.185 1.185 22 C -0.154 4.154 23 C -0.044 4.044 24 O -0.269 6.269 25 C -0.030 4.030 26 C 0.275 3.725 27 O -0.466 6.466 28 H 0.086 0.914 29 H 0.104 0.896 30 H 0.104 0.896 31 H 0.132 0.868 32 H 0.148 0.852 33 H 0.128 0.872 34 H 0.171 0.829 35 H 0.173 0.827 36 H 0.161 0.839 37 H 0.126 0.874 38 H 0.095 0.905 39 H 0.115 0.885 40 H 0.142 0.858 41 H 0.085 0.915 42 H 0.161 0.839 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -18.403 -1.908 -9.609 20.848 hybrid contribution 1.005 -0.479 1.193 1.631 sum -17.398 -2.387 -8.417 19.474 Atomic orbital electron populations 1.21937 0.77474 1.03977 1.03821 1.47472 1.08633 1.05872 1.71614 1.22198 0.88083 0.85011 1.06288 1.23117 0.93704 0.89445 0.91180 1.23776 0.94157 0.95932 0.86271 1.49694 1.14148 1.49348 1.24420 1.18462 0.81533 0.79265 0.83218 1.90681 1.80579 1.53727 1.22775 1.19721 0.93751 1.01883 0.98602 1.21513 1.01522 1.03038 0.96301 1.20994 0.92656 0.98281 0.99571 1.21454 0.97993 1.04006 1.00024 1.17944 0.93523 0.89892 0.92431 1.19850 0.94800 1.43960 0.94153 0.89823 1.26865 1.03001 0.91653 0.97259 1.69893 1.34142 1.35615 1.05879 0.85233 0.76968 0.80181 0.77246 1.17516 1.19789 1.18547 1.21494 0.93188 1.00189 1.00561 1.24012 0.86362 0.96794 0.97213 1.88181 1.58436 1.14138 1.66097 1.22817 0.87305 0.87994 1.04836 1.20995 0.91845 0.83735 0.75927 1.90715 1.67633 1.36013 1.52281 0.91358 0.89579 0.89642 0.86809 0.85161 0.87152 0.82936 0.82736 0.83933 0.87379 0.90479 0.88460 0.85768 0.91497 0.83940 0.89123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.71 10.58 127.77 1.35 2.06 16 2 N -0.60 -8.47 3.23 -850.50 -2.75 -11.22 16 3 C 0.11 0.88 5.91 86.28 0.51 1.39 16 4 C 0.07 1.07 1.16 -10.64 -0.01 1.06 16 5 C 0.12 2.09 5.92 86.28 0.51 2.60 16 6 N -0.64 -19.41 3.61 -853.55 -3.08 -22.49 16 7 C 0.58 26.01 7.99 86.80 0.69 26.70 16 8 O -0.60 -32.23 17.09 -3.88 -0.07 -32.29 16 9 C -0.14 -6.47 5.87 -20.13 -0.12 -6.59 16 10 C -0.20 -7.70 9.13 22.70 0.21 -7.49 16 11 C -0.10 -3.69 10.01 22.18 0.22 -3.46 16 12 C -0.21 -9.91 9.78 22.77 0.22 -9.69 16 13 C 0.06 3.51 5.58 -21.32 -0.12 3.39 16 14 C -0.50 -27.39 9.07 23.47 0.21 -27.18 16 15 H 0.08 4.32 7.89 -2.91 -0.02 4.29 16 16 C 0.03 1.40 5.20 85.25 0.44 1.84 16 17 N -0.83 -47.20 10.81 21.82 0.24 -46.97 16 18 Si 0.98 40.25 29.59 68.60 2.03 42.28 16 19 H -0.25 -9.62 7.11 99.48 0.71 -8.91 16 20 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 21 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 22 C -0.13 -7.53 8.23 23.01 0.19 -7.34 16 23 C 0.08 1.70 7.95 86.28 0.69 2.39 16 24 O -0.35 -7.51 10.66 -148.98 -1.59 -9.10 16 25 C 0.05 0.98 6.65 71.07 0.47 1.45 16 26 C 0.49 10.19 7.58 87.65 0.66 10.85 16 27 O -0.58 -16.49 16.06 -3.04 -0.05 -16.54 16 28 H 0.07 1.07 6.68 -2.39 -0.02 1.05 16 29 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.11 0.48 8.14 -2.39 -0.02 0.46 16 32 H 0.13 0.27 7.87 -2.39 -0.02 0.26 16 33 H 0.11 2.04 6.28 -2.39 -0.02 2.03 16 34 H 0.15 1.32 8.10 -2.39 -0.02 1.30 16 35 H 0.16 4.14 3.76 -2.91 -0.01 4.13 16 36 H 0.14 4.04 8.06 -2.91 -0.02 4.02 16 37 H 0.11 4.59 8.06 -2.91 -0.02 4.56 16 38 H 0.28 15.03 8.30 -92.70 -0.77 14.26 16 39 H 0.10 6.17 5.67 -2.91 -0.02 6.15 16 40 H 0.12 1.95 7.91 -2.39 -0.02 1.93 16 41 H 0.07 1.71 7.01 -2.39 -0.02 1.69 16 42 H 0.14 2.53 8.14 -2.39 -0.02 2.51 16 43 H 0.09 1.83 7.15 -2.39 -0.02 1.81 16 Total: -1.00 -83.59 354.27 1.92 -81.67 By element: Atomic # 1 Polarization: 21.62 SS G_CDS: 1.05 Total: 22.67 kcal Atomic # 6 Polarization: -14.13 SS G_CDS: 6.14 Total: -8.00 kcal Atomic # 7 Polarization: -75.09 SS G_CDS: -5.60 Total: -80.68 kcal Atomic # 8 Polarization: -56.23 SS G_CDS: -1.70 Total: -57.93 kcal Atomic # 14 Polarization: 40.25 SS G_CDS: 2.03 Total: 42.28 kcal Total: -83.59 1.92 -81.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271660607.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.458 kcal (2) G-P(sol) polarization free energy of solvation -83.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds