Wall clock time and date at job start Tue Mar 31 2020 05:15:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34273 * 119.38145 * 2 1 4 4 O 1.21279 * 118.97065 * 1.97335 * 3 2 1 5 5 C 1.50280 * 122.05456 * 181.98861 * 3 2 1 6 6 O 1.42824 * 110.50270 * 341.58086 * 5 3 2 7 7 C 1.43382 * 113.33819 * 51.29853 * 6 5 3 8 8 C 1.45920 * 119.38083 * 179.97438 * 2 1 3 9 9 C 1.53484 * 113.81040 * 32.94047 * 8 2 1 10 10 N 1.47666 * 85.98670 * 222.04972 * 9 8 2 11 11 C 1.34783 * 134.45534 * 204.33479 * 10 9 8 12 12 O 1.21551 * 119.99647 * 176.15003 * 11 10 9 13 13 C 1.47883 * 120.00041 * 356.15855 * 11 10 9 14 14 C 1.39913 * 120.02589 * 352.98770 * 13 11 10 15 15 C 1.38335 * 120.35972 * 179.72002 * 14 13 11 16 16 C 1.37753 * 120.41008 * 0.55955 * 15 14 13 17 17 C 1.40751 * 120.03569 * 359.72049 * 16 15 14 18 18 C 1.41437 * 120.17254 * 180.02562 * 17 16 15 19 19 H 1.08003 * 120.00079 * 153.39312 * 18 17 16 20 20 C 1.39933 * 120.00497 * 333.39573 * 18 17 16 21 21 N 1.30822 * 120.00424 * 157.91797 * 20 18 17 22 22 Si 1.86805 * 119.99841 * 337.90856 * 20 18 17 23 23 H 1.48506 * 109.46843 * 95.23003 * 22 20 18 24 24 H 1.48493 * 109.47447 * 215.23144 * 22 20 18 25 25 H 1.48507 * 109.47061 * 335.23612 * 22 20 18 26 26 C 1.38997 * 120.02324 * 173.26587 * 13 11 10 27 27 C 1.47656 * 91.08622 * 24.32234 * 10 9 8 28 28 H 1.08998 * 109.46999 * 359.97438 * 1 2 3 29 29 H 1.08993 * 109.47629 * 119.99802 * 1 2 3 30 30 H 1.09001 * 109.46870 * 239.99482 * 1 2 3 31 31 H 1.09000 * 109.26668 * 221.31496 * 5 3 2 32 32 H 1.08999 * 109.26931 * 101.85060 * 5 3 2 33 33 H 1.09002 * 109.70751 * 54.08086 * 7 6 5 34 34 H 1.09000 * 109.70755 * 174.69292 * 7 6 5 35 35 H 1.08994 * 113.78741 * 336.31839 * 9 8 2 36 36 H 1.09002 * 113.78752 * 107.78031 * 9 8 2 37 37 H 1.08001 * 119.82348 * 359.97438 * 14 13 11 38 38 H 1.07997 * 119.79246 * 180.25673 * 15 14 13 39 39 H 1.07995 * 119.97872 * 179.69713 * 16 15 14 40 40 H 0.97003 * 119.99829 * 180.02562 * 21 20 18 41 41 H 1.07997 * 120.20501 * 0.02562 * 26 13 11 42 42 H 1.08998 * 113.79196 * 221.41843 * 27 10 9 43 43 H 1.08999 * 113.79548 * 89.94544 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1237 1.1700 0.0000 4 8 1.4879 2.2021 0.0365 5 6 3.6242 1.2405 -0.0442 6 8 4.1953 -0.0109 0.3401 7 6 3.6536 -1.1271 -0.3785 8 6 2.1808 -1.2715 0.0006 9 6 1.4580 -2.3900 -0.7625 10 7 1.8531 -3.2676 0.3574 11 6 2.0453 -4.5946 0.4944 12 8 2.4466 -5.0448 1.5497 13 6 1.7680 -5.5028 -0.6393 14 6 1.1691 -5.0076 -1.8028 15 6 0.9119 -5.8498 -2.8697 16 6 1.2318 -7.1876 -2.7948 17 6 1.8295 -7.7050 -1.6303 18 6 2.1596 -9.0779 -1.5505 19 1 2.9621 -9.4038 -0.9053 20 6 1.4466 -10.0142 -2.3076 21 7 1.9819 -11.1751 -2.5853 22 14 -0.2699 -9.6065 -2.9216 23 1 -0.1880 -9.0824 -4.3086 24 1 -1.1062 -10.8334 -2.9046 25 1 -0.8801 -8.5792 -2.0396 26 6 2.0970 -6.8501 -0.5476 27 6 1.9535 -2.1088 1.2670 28 1 -0.3633 1.0276 0.0005 29 1 -0.3634 -0.5138 -0.8899 30 1 -0.3633 -0.5139 0.8900 31 1 3.9680 2.0177 0.6384 32 1 3.9431 1.4855 -1.0573 33 1 3.7415 -0.9517 -1.4507 34 1 4.1933 -2.0349 -0.1087 35 1 0.3815 -2.2408 -0.8456 36 1 1.9276 -2.6495 -1.7113 37 1 0.9099 -3.9613 -1.8699 38 1 0.4531 -5.4569 -3.7649 39 1 1.0234 -7.8397 -3.6300 40 1 1.4877 -11.8240 -3.1104 41 1 2.5549 -7.2377 0.3504 42 1 2.8170 -2.1446 1.9312 43 1 1.0242 -1.8760 1.7870 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271661702.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:28 Heat of formation + Delta-G solvation = -30.012226 kcal Electronic energy + Delta-G solvation = -28218.682840 eV Core-core repulsion = 24230.976546 eV Total energy + Delta-G solvation = -3987.706294 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.141 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.80896 -39.84446 -38.38863 -37.71228 -37.08993 -34.84541 -33.79531 -31.20681 -30.26149 -29.87958 -29.18365 -27.45123 -26.95946 -25.23538 -25.07988 -23.24516 -21.71190 -20.78443 -19.45932 -18.79142 -18.44374 -17.80440 -17.19283 -16.69318 -16.24999 -15.94249 -15.75407 -15.48581 -15.08276 -14.86888 -14.69404 -14.49992 -13.89607 -13.70483 -13.55110 -13.36520 -13.21692 -13.07248 -12.79868 -12.70379 -12.37409 -12.13454 -12.05920 -11.87150 -11.74516 -11.30104 -11.10942 -10.93866 -10.89573 -10.60312 -10.07157 -9.95551 -9.75257 -9.51652 -9.21070 -9.14719 -8.75304 -7.95317 -7.86963 -7.12014 -4.62737 1.80512 2.04430 2.22363 2.44526 2.88486 2.98549 3.11202 3.18386 3.19856 3.47579 3.76420 3.84886 3.93562 4.13967 4.23911 4.39518 4.63451 4.81919 4.85738 4.98943 5.02649 5.07762 5.14464 5.24497 5.25004 5.28261 5.42117 5.45597 5.55806 5.69489 5.82413 5.91772 5.99459 6.31652 6.35310 6.59429 6.61814 6.86429 6.90081 7.13470 7.32934 7.43356 7.59251 7.65446 7.69932 7.89235 8.19232 8.44709 8.49810 8.62505 9.89480 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.025733 B = 0.002807 C = 0.002704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.851973 B = 9973.322068 C =10352.181321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.591 5.591 3 C 0.491 3.509 4 O -0.540 6.540 5 C 0.047 3.953 6 O -0.362 6.362 7 C 0.075 3.925 8 C 0.094 3.906 9 C 0.103 3.897 10 N -0.642 5.642 11 C 0.592 3.408 12 O -0.538 6.538 13 C -0.103 4.103 14 C -0.234 4.234 15 C -0.081 4.081 16 C -0.226 4.226 17 C 0.083 3.917 18 C -0.440 4.440 19 H 0.094 0.906 20 C 0.085 3.915 21 N -0.795 5.795 22 Si 0.912 3.088 23 H -0.268 1.268 24 H -0.288 1.288 25 H -0.245 1.245 26 C -0.138 4.138 27 C 0.106 3.894 28 H 0.093 0.907 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.133 0.867 32 H 0.092 0.908 33 H 0.075 0.925 34 H 0.126 0.874 35 H 0.097 0.903 36 H 0.104 0.896 37 H 0.106 0.894 38 H 0.098 0.902 39 H 0.103 0.897 40 H 0.288 0.712 41 H 0.114 0.886 42 H 0.093 0.907 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.137 19.609 0.086 19.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.324 5.324 3 C 0.279 3.721 4 O -0.417 6.417 5 C -0.033 4.033 6 O -0.280 6.280 7 C -0.002 4.002 8 C 0.007 3.993 9 C -0.021 4.021 10 N -0.379 5.379 11 C 0.386 3.614 12 O -0.415 6.415 13 C -0.106 4.106 14 C -0.253 4.253 15 C -0.099 4.099 16 C -0.246 4.246 17 C 0.079 3.921 18 C -0.467 4.467 19 H 0.112 0.888 20 C -0.136 4.136 21 N -0.418 5.418 22 Si 0.738 3.262 23 H -0.194 1.194 24 H -0.216 1.216 25 H -0.168 1.168 26 C -0.159 4.159 27 C -0.018 4.018 28 H 0.112 0.888 29 H 0.086 0.914 30 H 0.083 0.917 31 H 0.150 0.850 32 H 0.110 0.890 33 H 0.093 0.907 34 H 0.144 0.856 35 H 0.114 0.886 36 H 0.122 0.878 37 H 0.124 0.876 38 H 0.116 0.884 39 H 0.121 0.879 40 H 0.098 0.902 41 H 0.133 0.867 42 H 0.111 0.889 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -1.028 19.362 0.775 19.404 hybrid contribution -1.147 -0.159 -0.615 1.311 sum -2.175 19.202 0.160 19.326 Atomic orbital electron populations 1.21836 0.78589 1.04736 1.02055 1.47399 1.07355 1.05029 1.72654 1.21215 0.91773 0.83326 0.75785 1.90736 1.68419 1.32805 1.49773 1.22802 0.88050 0.88424 1.03987 1.88229 1.62451 1.14133 1.63177 1.22791 0.89184 0.91236 0.97013 1.22995 0.94637 0.83025 0.98677 1.23638 1.00765 0.84491 0.93239 1.49590 1.70356 1.04858 1.13116 1.18531 0.75698 0.78969 0.88229 1.90735 1.46304 1.74736 1.29708 1.19288 1.04480 0.93554 0.93268 1.20807 1.10909 0.98707 0.94920 1.20516 0.98681 0.93822 0.96902 1.21182 1.09943 0.94950 0.98489 1.17656 0.90453 0.93741 0.90208 1.19546 1.15824 0.89775 1.21559 0.88797 1.26204 1.00602 0.94355 0.92454 1.69716 1.37704 1.06907 1.27443 0.86316 0.81347 0.78374 0.80164 1.19449 1.21567 1.16787 1.21223 1.04916 0.91379 0.98342 1.23421 1.02943 0.81545 0.93844 0.88833 0.91371 0.91665 0.84976 0.89003 0.90666 0.85634 0.88561 0.87836 0.87607 0.88392 0.87891 0.90154 0.86750 0.88878 0.89548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.55 9.52 59.84 0.57 1.12 16 2 N -0.59 -5.36 3.05 -170.46 -0.52 -5.88 16 3 C 0.49 4.95 7.64 -11.41 -0.09 4.87 16 4 O -0.54 -7.10 16.22 5.56 0.09 -7.01 16 5 C 0.05 0.36 6.94 35.80 0.25 0.60 16 6 O -0.36 -3.28 10.84 -35.23 -0.38 -3.66 16 7 C 0.07 0.63 5.99 37.03 0.22 0.85 16 8 C 0.09 0.85 1.51 -135.77 -0.20 0.65 16 9 C 0.10 1.02 5.20 -3.16 -0.02 1.00 16 10 N -0.64 -8.80 3.48 -181.58 -0.63 -9.43 16 11 C 0.59 11.11 7.99 -12.31 -0.10 11.01 16 12 O -0.54 -11.84 17.08 5.32 0.09 -11.75 16 13 C -0.10 -2.09 5.87 -105.04 -0.62 -2.71 16 14 C -0.23 -4.23 9.09 -38.92 -0.35 -4.59 16 15 C -0.08 -1.56 10.01 -39.72 -0.40 -1.96 16 16 C -0.23 -5.07 7.31 -38.81 -0.28 -5.36 16 17 C 0.08 2.01 5.15 -106.87 -0.55 1.46 16 18 C -0.44 -11.47 9.55 -37.73 -0.36 -11.83 16 19 H 0.09 2.57 8.06 -52.48 -0.42 2.15 16 20 C 0.08 2.12 5.36 -17.35 -0.09 2.03 16 21 N -0.79 -20.32 13.93 55.55 0.77 -19.54 16 22 Si 0.91 19.74 24.57 -169.99 -4.18 15.57 16 23 H -0.27 -5.56 6.63 56.52 0.37 -5.19 16 24 H -0.29 -6.04 7.11 56.52 0.40 -5.63 16 25 H -0.24 -5.45 6.99 56.52 0.39 -5.05 16 26 C -0.14 -3.21 9.34 -38.44 -0.36 -3.57 16 27 C 0.11 1.18 7.98 -3.15 -0.03 1.15 16 28 H 0.09 0.82 6.78 -51.93 -0.35 0.47 16 29 H 0.07 0.44 6.80 -51.93 -0.35 0.09 16 30 H 0.06 0.47 7.25 -51.93 -0.38 0.09 16 31 H 0.13 0.84 8.14 -51.93 -0.42 0.41 16 32 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.08 0.50 8.13 -51.93 -0.42 0.08 16 34 H 0.13 1.15 7.97 -51.93 -0.41 0.74 16 35 H 0.10 0.83 6.05 -51.93 -0.31 0.52 16 36 H 0.10 0.98 6.72 -51.93 -0.35 0.63 16 37 H 0.11 1.51 4.00 -52.49 -0.21 1.30 16 38 H 0.10 1.59 8.06 -52.49 -0.42 1.17 16 39 H 0.10 2.30 4.56 -52.49 -0.24 2.06 16 40 H 0.29 6.61 8.30 -40.82 -0.34 6.27 16 41 H 0.11 2.72 7.65 -52.49 -0.40 2.32 16 42 H 0.09 1.08 8.09 -51.93 -0.42 0.66 16 43 H 0.09 0.88 7.18 -51.93 -0.37 0.51 16 LS Contribution 346.20 15.07 5.22 5.22 Total: -1.00 -31.03 346.20 -7.03 -38.06 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: -5.08 Total: 3.70 kcal Atomic # 6 Polarization: -2.87 SS G_CDS: -2.41 Total: -5.28 kcal Atomic # 7 Polarization: -34.48 SS G_CDS: -0.38 Total: -34.86 kcal Atomic # 8 Polarization: -22.21 SS G_CDS: -0.20 Total: -22.41 kcal Atomic # 14 Polarization: 19.74 SS G_CDS: -4.18 Total: 15.57 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.03 -7.03 -38.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271661702.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.046 kcal (2) G-P(sol) polarization free energy of solvation -31.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds