Wall clock time and date at job start Tue Mar 31 2020 05:15:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34270 * 119.37705 * 2 1 4 4 O 1.21279 * 118.97415 * 1.98474 * 3 2 1 5 5 C 1.50281 * 122.05106 * 181.97110 * 3 2 1 6 6 O 1.42816 * 110.49718 * 341.59933 * 5 3 2 7 7 C 1.43375 * 113.35492 * 51.29765 * 6 5 3 8 8 C 1.45916 * 119.37609 * 179.97438 * 2 1 3 9 9 C 1.53480 * 113.81069 * 32.95150 * 8 2 1 10 10 N 1.47666 * 85.99110 * 222.04860 * 9 8 2 11 11 C 1.34773 * 134.45999 * 204.36376 * 10 9 8 12 12 O 1.21610 * 120.00281 * 174.83189 * 11 10 9 13 13 C 1.47433 * 120.00053 * 354.81863 * 11 10 9 14 14 C 1.39227 * 120.28115 * 328.36667 * 13 11 10 15 15 C 1.38226 * 120.08919 * 179.97438 * 14 13 11 16 16 C 1.38831 * 120.67795 * 0.02562 * 15 14 13 17 17 C 1.37599 * 120.56597 * 359.97438 * 16 15 14 18 18 C 1.40708 * 119.88674 * 359.73985 * 17 16 15 19 19 C 1.40884 * 120.33035 * 180.25295 * 18 17 16 20 20 H 1.08006 * 120.00167 * 153.87764 * 19 18 17 21 21 C 1.40272 * 120.00170 * 333.88581 * 19 18 17 22 22 N 1.30626 * 119.99869 * 344.64727 * 21 19 18 23 23 Si 1.86802 * 120.00252 * 164.64730 * 21 19 18 24 24 H 1.48501 * 109.46761 * 359.97438 * 23 21 19 25 25 H 1.48493 * 109.47461 * 119.99577 * 23 21 19 26 26 H 1.48497 * 109.47179 * 240.00260 * 23 21 19 27 27 C 1.47661 * 91.07948 * 24.31833 * 10 9 8 28 28 H 1.09000 * 109.46639 * 211.14625 * 1 2 3 29 29 H 1.08996 * 109.46847 * 331.14619 * 1 2 3 30 30 H 1.09003 * 109.47144 * 91.14321 * 1 2 3 31 31 H 1.09001 * 109.27482 * 101.86249 * 5 3 2 32 32 H 1.09007 * 109.27279 * 221.33467 * 5 3 2 33 33 H 1.09003 * 109.69434 * 174.71539 * 7 6 5 34 34 H 1.09001 * 109.72368 * 54.09862 * 7 6 5 35 35 H 1.08999 * 113.79215 * 336.31941 * 9 8 2 36 36 H 1.09005 * 113.79237 * 107.78017 * 9 8 2 37 37 H 1.07998 * 119.95823 * 359.97438 * 14 13 11 38 38 H 1.07997 * 119.66275 * 179.97438 * 15 14 13 39 39 H 1.07993 * 119.71562 * 179.97438 * 16 15 14 40 40 H 1.08002 * 120.05616 * 180.02562 * 17 16 15 41 41 H 0.97004 * 120.00013 * 180.02562 * 22 21 19 42 42 H 1.09003 * 113.79398 * 221.41114 * 27 10 9 43 43 H 1.08999 * 113.89570 * 89.96413 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1237 1.1700 0.0000 4 8 1.4879 2.2022 0.0367 5 6 3.6242 1.2405 -0.0438 6 8 4.1951 -0.0109 0.3405 7 6 3.6537 -1.1272 -0.3783 8 6 2.1808 -1.2715 0.0006 9 6 1.4580 -2.3898 -0.7627 10 7 1.8528 -3.2677 0.3572 11 6 2.0453 -4.5945 0.4939 12 8 2.4693 -5.0427 1.5419 13 6 1.7417 -5.5029 -0.6270 14 6 0.7159 -5.1996 -1.5183 15 6 0.4350 -6.0538 -2.5681 16 6 1.1667 -7.2199 -2.7478 17 6 2.1863 -7.5464 -1.8834 18 6 2.4965 -6.6910 -0.8101 19 6 3.5420 -7.0135 0.0774 20 1 4.0588 -6.2294 0.6109 21 6 3.9121 -8.3530 0.2681 22 7 3.1184 -9.3124 -0.1268 23 14 5.5398 -8.7650 1.0869 24 1 6.2493 -7.5085 1.4377 25 1 5.2882 -9.5528 2.3202 26 1 6.3762 -9.5609 0.1530 27 6 1.9532 -2.1089 1.2668 28 1 -0.3632 -0.8796 0.5315 29 1 -0.3633 0.9001 0.4959 30 1 -0.3633 -0.0205 -1.0275 31 1 3.9435 1.4856 -1.0568 32 1 3.9680 2.0176 0.6390 33 1 4.1934 -2.0348 -0.1078 34 1 3.7421 -0.9522 -1.4505 35 1 0.3815 -2.2406 -0.8460 36 1 1.9277 -2.6493 -1.7115 37 1 0.1390 -4.2958 -1.3893 38 1 -0.3624 -5.8120 -3.2551 39 1 0.9337 -7.8763 -3.5731 40 1 2.7505 -8.4554 -2.0312 41 1 3.3741 -10.2388 0.0054 42 1 2.8166 -2.1449 1.9313 43 1 1.0249 -1.8747 1.7878 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272321078.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:31 Heat of formation + Delta-G solvation = -36.865957 kcal Electronic energy + Delta-G solvation = -28737.533760 eV Core-core repulsion = 24749.530266 eV Total energy + Delta-G solvation = -3988.003494 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.141 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.55093 -39.49602 -38.11555 -37.50839 -36.48208 -34.60290 -33.83155 -30.61077 -29.95603 -29.40637 -28.97280 -27.14762 -26.41914 -25.37282 -24.99565 -22.69561 -21.35516 -20.90934 -18.91081 -18.56490 -18.12804 -17.40800 -17.10828 -16.45001 -16.28131 -15.66712 -15.43675 -15.16735 -14.90534 -14.78100 -14.33116 -14.21033 -13.57610 -13.55610 -13.19926 -13.10627 -12.91513 -12.74965 -12.62687 -12.28624 -12.18932 -11.86016 -11.71012 -11.63169 -11.36188 -11.18913 -11.03241 -10.87585 -10.74478 -10.56638 -10.08310 -9.81259 -9.66595 -9.33240 -9.00768 -8.76688 -8.28900 -7.65528 -7.54653 -6.93182 -4.49480 2.19708 2.31798 2.42886 2.72928 3.03436 3.11024 3.15478 3.28185 3.38358 3.86492 3.88526 3.95398 4.16999 4.36818 4.48607 4.57914 4.79025 4.95639 5.12121 5.17600 5.23921 5.32339 5.45578 5.46384 5.48997 5.53257 5.61270 5.74511 5.74983 5.96140 6.01687 6.20538 6.30867 6.49179 6.65385 6.89421 7.03852 7.04092 7.12877 7.37989 7.59460 7.74357 7.82826 7.90321 8.07526 8.21572 8.50523 8.70149 8.77483 9.14693 9.99642 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.016341 B = 0.003627 C = 0.003188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1713.087794 B = 7716.970245 C = 8781.119991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.591 5.591 3 C 0.490 3.510 4 O -0.542 6.542 5 C 0.047 3.953 6 O -0.363 6.363 7 C 0.076 3.924 8 C 0.094 3.906 9 C 0.109 3.891 10 N -0.649 5.649 11 C 0.600 3.400 12 O -0.528 6.528 13 C -0.264 4.264 14 C -0.054 4.054 15 C -0.253 4.253 16 C -0.091 4.091 17 C -0.158 4.158 18 C 0.145 3.855 19 C -0.416 4.416 20 H 0.092 0.908 21 C 0.074 3.926 22 N -0.779 5.779 23 Si 0.914 3.086 24 H -0.257 1.257 25 H -0.272 1.272 26 H -0.271 1.271 27 C 0.105 3.895 28 H 0.074 0.926 29 H 0.082 0.918 30 H 0.061 0.939 31 H 0.091 0.909 32 H 0.131 0.869 33 H 0.127 0.873 34 H 0.073 0.927 35 H 0.087 0.913 36 H 0.093 0.907 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.090 0.910 40 H 0.123 0.877 41 H 0.284 0.716 42 H 0.089 0.911 43 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.257 13.488 -3.026 13.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.324 5.324 3 C 0.278 3.722 4 O -0.420 6.420 5 C -0.032 4.032 6 O -0.281 6.281 7 C -0.001 4.001 8 C 0.007 3.993 9 C -0.016 4.016 10 N -0.389 5.389 11 C 0.397 3.603 12 O -0.404 6.404 13 C -0.268 4.268 14 C -0.072 4.072 15 C -0.272 4.272 16 C -0.110 4.110 17 C -0.177 4.177 18 C 0.141 3.859 19 C -0.443 4.443 20 H 0.110 0.890 21 C -0.147 4.147 22 N -0.403 5.403 23 Si 0.738 3.262 24 H -0.180 1.180 25 H -0.197 1.197 26 H -0.196 1.196 27 C -0.019 4.019 28 H 0.093 0.907 29 H 0.101 0.899 30 H 0.080 0.920 31 H 0.108 0.892 32 H 0.149 0.851 33 H 0.145 0.855 34 H 0.091 0.909 35 H 0.105 0.895 36 H 0.111 0.889 37 H 0.107 0.893 38 H 0.108 0.892 39 H 0.109 0.891 40 H 0.140 0.860 41 H 0.095 0.905 42 H 0.108 0.892 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -0.193 13.250 -2.239 13.439 hybrid contribution 0.034 -0.394 0.111 0.411 sum -0.159 12.855 -2.127 13.031 Atomic orbital electron populations 1.21759 0.78676 1.03696 1.02390 1.47465 1.07298 1.05176 1.72415 1.21199 0.91736 0.83311 0.75990 1.90730 1.68545 1.32864 1.49882 1.22784 0.88150 0.88507 1.03808 1.88221 1.62503 1.14127 1.63234 1.22793 0.89412 0.91125 0.96786 1.23029 0.94486 0.82768 0.99036 1.23382 0.99852 0.85023 0.93347 1.49942 1.71833 1.04958 1.12168 1.18237 0.75724 0.78140 0.88247 1.90731 1.45522 1.74203 1.29946 1.19255 1.05267 1.01437 1.00890 1.20651 0.95872 0.97010 0.93692 1.20249 1.05591 0.98905 1.02463 1.20797 0.96328 0.95823 0.98085 1.21390 0.99835 1.01398 0.95064 1.17402 0.89419 0.88533 0.90574 1.19928 1.12667 0.92743 1.19001 0.88964 1.26098 0.98174 0.96134 0.94252 1.69734 1.34370 1.01411 1.34802 0.86150 0.81206 0.79626 0.79256 1.18020 1.19674 1.19599 1.23323 1.02424 0.82463 0.93713 0.90700 0.89945 0.92036 0.89167 0.85121 0.85501 0.90880 0.89462 0.88873 0.89273 0.89234 0.89141 0.85960 0.90475 0.89246 0.90170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.72 8.96 59.85 0.54 1.26 16 2 N -0.59 -6.42 3.05 -170.44 -0.52 -6.94 16 3 C 0.49 5.73 7.64 -11.42 -0.09 5.64 16 4 O -0.54 -7.91 16.43 5.56 0.09 -7.82 16 5 C 0.05 0.43 6.94 35.80 0.25 0.68 16 6 O -0.36 -3.97 10.84 -35.23 -0.38 -4.35 16 7 C 0.08 0.81 5.99 37.04 0.22 1.03 16 8 C 0.09 1.06 1.50 -135.77 -0.20 0.85 16 9 C 0.11 1.33 5.47 -3.16 -0.02 1.31 16 10 N -0.65 -10.71 3.44 -181.72 -0.63 -11.33 16 11 C 0.60 13.28 7.41 -12.52 -0.09 13.19 16 12 O -0.53 -13.66 15.32 5.27 0.08 -13.57 16 13 C -0.26 -6.14 5.81 -104.36 -0.61 -6.75 16 14 C -0.05 -1.09 8.88 -39.22 -0.35 -1.44 16 15 C -0.25 -5.16 10.03 -39.37 -0.39 -5.55 16 16 C -0.09 -1.99 10.01 -39.60 -0.40 -2.39 16 17 C -0.16 -3.86 8.68 -38.88 -0.34 -4.20 16 18 C 0.14 3.72 5.58 -106.54 -0.60 3.13 16 19 C -0.42 -10.95 7.80 -37.82 -0.29 -11.24 16 20 H 0.09 2.50 6.38 -52.48 -0.33 2.16 16 21 C 0.07 1.81 5.18 -17.30 -0.09 1.72 16 22 N -0.78 -19.46 10.92 55.56 0.61 -18.85 16 23 Si 0.91 18.69 29.59 -169.99 -5.03 13.66 16 24 H -0.26 -5.31 7.11 56.52 0.40 -4.90 16 25 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 26 H -0.27 -5.29 7.11 56.52 0.40 -4.88 16 27 C 0.11 1.42 7.86 -3.16 -0.02 1.40 16 28 H 0.07 0.65 6.37 -51.93 -0.33 0.32 16 29 H 0.08 0.83 7.26 -51.93 -0.38 0.46 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.13 1.02 8.14 -51.93 -0.42 0.59 16 33 H 0.13 1.50 7.97 -51.93 -0.41 1.09 16 34 H 0.07 0.64 8.13 -51.93 -0.42 0.22 16 35 H 0.09 0.94 6.12 -51.93 -0.32 0.63 16 36 H 0.09 1.12 8.03 -51.93 -0.42 0.70 16 37 H 0.09 1.54 6.14 -52.49 -0.32 1.22 16 38 H 0.09 1.59 8.06 -52.49 -0.42 1.17 16 39 H 0.09 1.74 8.06 -52.49 -0.42 1.31 16 40 H 0.12 3.06 6.19 -52.49 -0.32 2.74 16 41 H 0.28 6.38 8.29 -40.82 -0.34 6.05 16 42 H 0.09 1.28 8.09 -51.93 -0.42 0.86 16 43 H 0.08 1.01 7.21 -51.93 -0.37 0.63 16 LS Contribution 351.35 15.07 5.29 5.29 Total: -1.00 -31.44 351.35 -8.27 -39.71 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: -5.30 Total: 5.55 kcal Atomic # 6 Polarization: 1.13 SS G_CDS: -2.48 Total: -1.35 kcal Atomic # 7 Polarization: -36.59 SS G_CDS: -0.54 Total: -37.13 kcal Atomic # 8 Polarization: -25.53 SS G_CDS: -0.21 Total: -25.74 kcal Atomic # 14 Polarization: 18.69 SS G_CDS: -5.03 Total: 13.66 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.44 -8.27 -39.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272321078.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.848 kcal (2) G-P(sol) polarization free energy of solvation -31.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds