Wall clock time and date at job start Tue Mar 31 2020 05:11:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46290 * 118.72994 * 2 1 4 4 C 1.52439 * 109.56483 * 164.07403 * 3 2 1 5 5 C 1.52868 * 114.30039 * 272.22630 * 4 3 2 6 6 N 1.47170 * 87.83585 * 220.31284 * 5 4 3 7 7 C 1.34782 * 135.99283 * 206.55970 * 6 5 4 8 8 O 1.21582 * 120.00103 * 357.17874 * 7 6 5 9 9 C 1.47641 * 119.99678 * 177.18458 * 7 6 5 10 10 C 1.40017 * 119.89207 * 188.07972 * 9 7 6 11 11 C 1.36319 * 120.10358 * 179.97438 * 10 9 7 12 12 C 1.40888 * 119.89541 * 0.02562 * 11 10 9 13 13 C 1.41103 * 120.10424 * 180.02562 * 12 11 10 14 14 H 1.08000 * 120.00106 * 24.83974 * 13 12 11 15 15 C 1.40228 * 120.00186 * 204.83313 * 13 12 11 16 16 N 1.30649 * 119.99756 * 15.12571 * 15 13 12 17 17 Si 1.86797 * 120.00266 * 195.12575 * 15 13 12 18 18 H 1.48503 * 109.47023 * 359.97438 * 17 15 13 19 19 H 1.48499 * 109.47353 * 120.00014 * 17 15 13 20 20 H 1.48503 * 109.46883 * 240.00203 * 17 15 13 21 21 C 1.40886 * 119.79020 * 0.02562 * 12 11 10 22 22 C 1.36320 * 119.89403 * 359.97438 * 21 12 11 23 23 C 1.47176 * 88.00905 * 26.81939 * 6 5 4 24 24 O 1.42550 * 112.73515 * 44.95939 * 4 3 2 25 25 C 1.43071 * 112.97011 * 296.19052 * 24 4 3 26 26 C 1.33716 * 118.72492 * 180.02562 * 2 1 3 27 27 O 1.21277 * 118.36195 * 3.29116 * 26 2 1 28 28 H 1.08999 * 109.47450 * 180.02562 * 1 2 3 29 29 H 1.09008 * 109.46819 * 299.99907 * 1 2 3 30 30 H 1.08995 * 109.47592 * 59.99273 * 1 2 3 31 31 H 1.08997 * 109.45776 * 44.04668 * 3 2 1 32 32 H 1.08997 * 109.45903 * 284.10702 * 3 2 1 33 33 H 1.09003 * 113.48768 * 105.56788 * 5 4 3 34 34 H 1.08995 * 113.49032 * 335.06138 * 5 4 3 35 35 H 1.07992 * 119.94809 * 0.27413 * 10 9 7 36 36 H 1.08000 * 120.05255 * 180.02562 * 11 10 9 37 37 H 0.97003 * 119.99885 * 179.97438 * 16 15 13 38 38 H 1.08004 * 120.05127 * 179.97438 * 21 12 11 39 39 H 1.07996 * 119.94630 * 179.97438 * 22 21 12 40 40 H 1.09003 * 113.49625 * 87.92274 * 23 6 5 41 41 H 1.09007 * 113.49186 * 218.43282 * 23 6 5 42 42 H 1.09010 * 109.34255 * 167.35273 * 25 24 4 43 43 H 1.08997 * 109.34479 * 286.89713 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1682 1.2828 0.0000 4 6 3.6248 1.0665 0.3941 5 6 3.8817 1.1078 1.9005 6 7 5.1162 1.8556 1.6131 7 6 6.3088 2.0268 2.2173 8 8 6.5215 1.5141 3.2990 9 6 7.3568 2.8371 1.5655 10 6 8.6471 2.8760 2.1078 11 6 9.6182 3.6223 1.5093 12 6 9.3217 4.3556 0.3434 13 6 10.3237 5.1292 -0.2801 14 1 11.3646 4.8752 -0.1445 15 6 9.9680 6.2276 -1.0758 16 7 8.7586 6.7175 -1.0100 17 14 11.2231 6.9905 -2.2299 18 1 12.5093 6.2567 -2.1173 19 1 10.7260 6.9074 -3.6268 20 1 11.4322 8.4141 -1.8626 21 6 8.0217 4.3142 -0.1979 22 6 7.0571 3.5651 0.4077 23 6 4.4749 2.3397 0.3800 24 8 4.2161 -0.0469 -0.2713 25 6 3.6027 -1.2929 0.0724 26 6 2.1077 -1.1726 -0.0005 27 8 1.4502 -2.1899 -0.0622 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8901 30 1 -0.3634 0.5139 -0.8898 31 1 1.6950 1.9563 0.7145 32 1 2.1231 1.7216 -0.9967 33 1 4.0605 0.1254 2.3378 34 1 3.1410 1.6870 2.4518 35 1 8.8746 2.3100 2.9990 36 1 10.6133 3.6513 1.9281 37 1 8.5126 7.4776 -1.5602 38 1 7.7897 4.8751 -1.0913 39 1 6.0602 3.5330 -0.0063 40 1 3.8943 3.2514 0.5212 41 1 5.1558 2.3999 -0.4691 42 1 3.9370 -2.0637 -0.6221 43 1 3.8939 -1.5715 1.0851 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272325246.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:49 Heat of formation + Delta-G solvation = -26.795996 kcal Electronic energy + Delta-G solvation = -27982.922016 eV Core-core repulsion = 23995.355188 eV Total energy + Delta-G solvation = -3987.566828 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.141 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.62306 -39.83870 -38.28463 -37.04558 -36.20760 -35.75206 -33.89893 -30.98426 -29.95041 -29.50030 -29.14521 -27.27933 -26.25815 -25.84305 -25.28992 -22.33970 -21.17572 -20.96884 -19.12568 -18.96482 -17.89549 -17.53987 -17.01895 -16.59909 -16.54987 -15.93812 -15.65689 -15.26658 -14.99626 -14.84856 -14.37501 -14.07107 -13.65475 -13.63363 -13.36911 -13.23342 -12.91549 -12.77153 -12.68754 -12.48511 -12.29786 -12.11911 -11.96822 -11.81201 -11.41307 -11.29283 -11.16258 -10.93945 -10.66925 -10.41913 -10.05058 -9.74479 -9.55363 -9.36334 -9.17934 -9.00142 -8.48422 -7.74630 -7.56305 -7.04315 -4.63875 2.16973 2.17417 2.45799 2.87967 2.93238 2.98758 3.01102 3.06362 3.09976 3.70685 3.74502 3.90877 3.95764 4.32766 4.53646 4.62959 4.86280 4.92576 4.97658 5.06044 5.13086 5.20278 5.23938 5.29409 5.38611 5.48813 5.50164 5.56516 5.59973 5.90407 6.06872 6.27319 6.30943 6.56053 6.75091 6.80150 6.96083 7.01526 7.11243 7.41713 7.63296 7.68570 7.79334 7.83962 8.03400 8.15441 8.37900 8.60878 8.72718 8.92480 9.86454 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.019443 B = 0.002748 C = 0.002560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.749914 B =10187.996759 C =10935.277778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.607 5.607 3 C 0.106 3.894 4 C 0.051 3.949 5 C 0.084 3.916 6 N -0.642 5.642 7 C 0.605 3.395 8 O -0.569 6.569 9 C -0.277 4.277 10 C -0.023 4.023 11 C -0.237 4.237 12 C 0.128 3.872 13 C -0.440 4.440 14 H 0.085 0.915 15 C 0.073 3.927 16 N -0.774 5.774 17 Si 0.914 3.086 18 H -0.258 1.258 19 H -0.269 1.269 20 H -0.272 1.272 21 C -0.178 4.178 22 C -0.075 4.075 23 C 0.121 3.879 24 O -0.328 6.328 25 C 0.049 3.951 26 C 0.491 3.509 27 O -0.546 6.546 28 H 0.091 0.909 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.095 0.905 32 H 0.087 0.913 33 H 0.078 0.922 34 H 0.090 0.910 35 H 0.100 0.900 36 H 0.099 0.901 37 H 0.285 0.715 38 H 0.124 0.876 39 H 0.103 0.897 40 H 0.103 0.897 41 H 0.107 0.893 42 H 0.135 0.865 43 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.913 -4.896 -2.761 15.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.341 5.341 3 C -0.018 4.018 4 C 0.009 3.991 5 C -0.039 4.039 6 N -0.378 5.378 7 C 0.405 3.595 8 O -0.450 6.450 9 C -0.282 4.282 10 C -0.042 4.042 11 C -0.257 4.257 12 C 0.124 3.876 13 C -0.468 4.468 14 H 0.103 0.897 15 C -0.148 4.148 16 N -0.398 5.398 17 Si 0.738 3.262 18 H -0.181 1.181 19 H -0.194 1.194 20 H -0.197 1.197 21 C -0.197 4.197 22 C -0.094 4.094 23 C -0.003 4.003 24 O -0.245 6.245 25 C -0.030 4.030 26 C 0.279 3.721 27 O -0.424 6.424 28 H 0.110 0.890 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.113 0.887 32 H 0.105 0.895 33 H 0.097 0.903 34 H 0.108 0.892 35 H 0.118 0.882 36 H 0.117 0.883 37 H 0.097 0.903 38 H 0.142 0.858 39 H 0.120 0.880 40 H 0.121 0.879 41 H 0.125 0.875 42 H 0.153 0.847 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -13.872 -5.447 -2.313 15.082 hybrid contribution 0.196 0.591 -0.308 0.694 sum -13.677 -4.856 -2.622 14.748 Atomic orbital electron populations 1.21786 0.78874 1.04723 1.01634 1.47360 1.07648 1.05961 1.73116 1.21900 0.90598 0.85538 1.03753 1.22821 0.91773 0.90757 0.93747 1.23356 0.87389 0.98332 0.94863 1.49254 1.12566 1.51009 1.24967 1.18258 0.79168 0.78956 0.83159 1.90658 1.80019 1.52576 1.21765 1.18760 0.94008 1.11792 1.03610 1.20347 0.91756 0.95255 0.96833 1.20724 0.98589 1.07159 0.99223 1.17823 0.92715 0.88308 0.88718 1.19896 0.95124 1.08599 1.23161 0.89725 1.26102 0.96231 0.96475 0.95964 1.69738 1.19510 1.18841 1.31677 0.86146 0.81212 0.79101 0.79747 1.18094 1.19373 1.19672 1.21070 0.93894 1.02646 1.02098 1.21001 0.98329 0.95798 0.94268 1.23087 0.93600 0.93393 0.90220 1.88184 1.57189 1.13181 1.65970 1.22810 0.87379 0.88224 1.04629 1.20947 0.91829 0.83337 0.76002 1.90723 1.67011 1.34560 1.50131 0.89047 0.91852 0.91869 0.88709 0.89511 0.90337 0.89206 0.88190 0.88333 0.90329 0.85841 0.87951 0.87907 0.87505 0.84719 0.88889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.52 10.58 59.85 0.63 1.15 16 2 N -0.61 -5.61 3.24 -182.63 -0.59 -6.20 16 3 C 0.11 0.79 5.96 -4.44 -0.03 0.77 16 4 C 0.05 0.54 1.23 -90.93 -0.11 0.42 16 5 C 0.08 1.04 7.79 -8.20 -0.06 0.98 16 6 N -0.64 -10.54 3.68 -186.35 -0.69 -11.23 16 7 C 0.61 12.99 7.99 -12.42 -0.10 12.89 16 8 O -0.57 -13.79 17.13 5.29 0.09 -13.70 16 9 C -0.28 -6.30 5.89 -104.73 -0.62 -6.92 16 10 C -0.02 -0.53 9.52 -39.61 -0.38 -0.91 16 11 C -0.24 -5.69 9.73 -39.27 -0.38 -6.08 16 12 C 0.13 3.20 5.58 -106.81 -0.60 2.60 16 13 C -0.44 -10.76 9.06 -37.75 -0.34 -11.11 16 14 H 0.08 1.99 7.89 -52.49 -0.41 1.57 16 15 C 0.07 1.67 5.20 -17.31 -0.09 1.58 16 16 N -0.77 -18.03 10.80 55.56 0.60 -17.43 16 17 Si 0.91 16.95 29.59 -169.99 -5.03 11.92 16 18 H -0.26 -4.77 7.11 56.52 0.40 -4.37 16 19 H -0.27 -4.89 7.11 56.52 0.40 -4.48 16 20 H -0.27 -4.98 7.11 56.52 0.40 -4.58 16 21 C -0.18 -4.25 8.63 -39.27 -0.34 -4.58 16 22 C -0.08 -1.63 9.10 -39.61 -0.36 -1.99 16 23 C 0.12 1.46 5.91 -8.08 -0.05 1.41 16 24 O -0.33 -4.08 10.69 -35.23 -0.38 -4.46 16 25 C 0.05 0.52 6.69 35.75 0.24 0.76 16 26 C 0.49 5.69 7.58 -11.72 -0.09 5.60 16 27 O -0.55 -7.93 16.06 5.56 0.09 -7.84 16 28 H 0.09 0.81 6.68 -51.93 -0.35 0.47 16 29 H 0.06 0.35 8.14 -51.92 -0.42 -0.08 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.09 0.49 7.85 -51.93 -0.41 0.08 16 32 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.08 1.03 7.11 -51.93 -0.37 0.66 16 34 H 0.09 0.90 7.90 -51.93 -0.41 0.49 16 35 H 0.10 2.27 7.65 -52.49 -0.40 1.87 16 36 H 0.10 2.20 8.06 -52.49 -0.42 1.78 16 37 H 0.29 5.94 8.29 -40.82 -0.34 5.61 16 38 H 0.12 2.97 6.06 -52.48 -0.32 2.66 16 39 H 0.10 1.84 3.83 -52.49 -0.20 1.64 16 40 H 0.10 0.94 8.10 -51.93 -0.42 0.52 16 41 H 0.11 1.41 6.17 -51.92 -0.32 1.09 16 42 H 0.14 1.26 8.14 -51.92 -0.42 0.84 16 43 H 0.09 0.95 7.25 -51.93 -0.38 0.57 16 LS Contribution 354.38 15.07 5.34 5.34 Total: -1.00 -32.14 354.38 -8.47 -40.61 By element: Atomic # 1 Polarization: 11.65 SS G_CDS: -5.24 Total: 6.41 kcal Atomic # 6 Polarization: -0.75 SS G_CDS: -2.67 Total: -3.42 kcal Atomic # 7 Polarization: -34.19 SS G_CDS: -0.68 Total: -34.86 kcal Atomic # 8 Polarization: -25.80 SS G_CDS: -0.20 Total: -26.00 kcal Atomic # 14 Polarization: 16.95 SS G_CDS: -5.03 Total: 11.92 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.14 -8.47 -40.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272325246.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.817 kcal (2) G-P(sol) polarization free energy of solvation -32.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds