Wall clock time and date at job start Tue Mar 31 2020 06:02:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 O 1.42100 * 110.54062 * 2 1 4 4 O 1.42100 * 110.54133 * 223.24721 * 2 1 3 5 5 N 1.65599 * 104.44890 * 111.62276 * 2 1 3 6 6 C 1.47143 * 120.63729 * 245.09354 * 5 2 1 7 7 C 1.53205 * 108.63771 * 127.89391 * 6 5 2 8 8 C 1.53045 * 109.46909 * 55.28192 * 7 6 5 9 9 C 1.53206 * 109.46847 * 298.04274 * 8 7 6 10 10 C 1.45967 * 120.63986 * 65.11733 * 5 2 1 11 11 C 1.53839 * 110.75277 * 354.55781 * 10 5 2 12 12 C 1.51464 * 104.15409 * 142.36895 * 11 10 5 13 13 O 1.21276 * 124.94338 * 164.30608 * 12 11 10 14 14 N 1.34518 * 110.10788 * 344.31909 * 12 11 10 15 15 C 1.46502 * 124.34722 * 179.59918 * 14 12 11 16 16 C 1.53011 * 109.46820 * 90.02919 * 15 14 12 17 17 C 1.50703 * 109.46843 * 179.97438 * 16 15 14 18 18 H 1.08001 * 120.00026 * 0.02562 * 17 16 15 19 19 C 1.37870 * 119.99503 * 179.97438 * 17 16 15 20 20 N 1.31520 * 120.00456 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99881 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47378 * 60.00160 * 21 19 17 23 23 H 1.48496 * 109.47462 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.47030 * 300.00280 * 21 19 17 25 25 C 1.46951 * 111.30045 * 359.62669 * 14 12 11 26 26 H 1.08995 * 109.47335 * 308.37768 * 1 2 3 27 27 H 1.09000 * 109.47560 * 68.37707 * 1 2 3 28 28 H 1.09003 * 109.47260 * 188.37987 * 1 2 3 29 29 H 1.09001 * 109.60935 * 8.15232 * 6 5 2 30 30 H 1.08994 * 109.74987 * 247.72072 * 6 5 2 31 31 H 1.08999 * 109.46829 * 295.28656 * 7 6 5 32 32 H 1.08994 * 109.47061 * 175.28248 * 7 6 5 33 33 H 1.09005 * 109.47022 * 178.04601 * 8 7 6 34 34 H 1.08998 * 109.47534 * 58.04705 * 8 7 6 35 35 H 1.08998 * 109.48541 * 299.90044 * 9 8 7 36 36 H 1.08996 * 109.48700 * 179.84334 * 9 8 7 37 37 H 1.08998 * 110.51954 * 23.65704 * 11 10 5 38 38 H 1.09004 * 110.51538 * 261.07149 * 11 10 5 39 39 H 1.09002 * 109.47127 * 210.02683 * 15 14 12 40 40 H 1.08998 * 109.47399 * 330.03280 * 15 14 12 41 41 H 1.09002 * 109.47077 * 299.99795 * 16 15 14 42 42 H 1.08998 * 109.46840 * 60.00018 * 16 15 14 43 43 H 0.97002 * 119.99923 * 180.02562 * 20 19 17 44 44 H 1.09002 * 110.27779 * 135.27326 * 25 14 12 45 45 H 1.09001 * 110.27329 * 257.26102 * 25 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3126 1.3307 0.0000 4 8 2.3126 -0.9693 -0.9117 5 7 2.2272 -0.5909 1.4908 6 6 2.9306 0.2580 2.4653 7 6 2.1645 0.2190 3.7915 8 6 2.0026 -1.2339 4.2444 9 6 1.1822 -2.0044 3.2049 10 6 1.9011 -1.9641 1.8632 11 6 1.0546 -2.6390 0.7702 12 6 1.5637 -4.0651 0.7351 13 8 0.9903 -4.9946 0.2079 14 7 2.7444 -4.1504 1.3742 15 6 3.5101 -5.3892 1.5339 16 6 4.4669 -5.5534 0.3512 17 6 5.2550 -6.8273 0.5159 18 1 5.0897 -7.4570 1.3776 19 6 6.1863 -7.1893 -0.4342 20 7 6.3872 -6.4227 -1.4838 21 14 7.1627 -8.7687 -0.2305 22 1 6.2311 -9.9241 -0.1830 23 1 8.0914 -8.9281 -1.3783 24 1 7.9424 -8.7093 1.0319 25 6 3.1670 -2.8417 1.8919 26 1 -0.3634 0.6380 0.8056 27 1 -0.3634 0.3787 -0.9553 28 1 -0.3634 -1.0167 0.1498 29 1 2.9706 1.2828 2.0960 30 1 3.9430 -0.1162 2.6165 31 1 1.1811 0.6692 3.6564 32 1 2.7183 0.7757 4.5474 33 1 1.4881 -1.2598 5.2051 34 1 2.9852 -1.6946 4.3460 35 1 0.1989 -1.5450 3.1045 36 1 1.0690 -3.0399 3.5258 37 1 1.2146 -2.1524 -0.1919 38 1 -0.0020 -2.6170 1.0372 39 1 4.0822 -5.3457 2.4607 40 1 2.8262 -6.2372 1.5684 41 1 3.8948 -5.5968 -0.5756 42 1 5.1507 -4.7053 0.3167 43 1 7.0422 -6.6777 -2.1523 44 1 3.5345 -2.9403 2.9134 45 1 3.9395 -2.4142 1.2527 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274905028.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:47 Heat of formation + Delta-G solvation = -117.072432 kcal Electronic energy + Delta-G solvation = -28380.192621 eV Core-core repulsion = 24524.155065 eV Total energy + Delta-G solvation = -3856.037556 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.11770 -39.39964 -38.47943 -37.15539 -37.03369 -35.56183 -34.10081 -33.39789 -31.55555 -30.54910 -29.14031 -27.82012 -26.35394 -24.96804 -23.49566 -22.86931 -21.45205 -20.39628 -19.44415 -18.78208 -18.47294 -17.97176 -17.38033 -17.19225 -16.65760 -16.61099 -16.36981 -15.72003 -15.29767 -15.26229 -14.90415 -14.78267 -14.59188 -14.49332 -14.18066 -14.07474 -13.96617 -13.82749 -13.55503 -13.40056 -13.17307 -13.07875 -12.85063 -12.83814 -12.60519 -12.46981 -12.18041 -12.01210 -11.95599 -11.87790 -11.66920 -11.52101 -11.43402 -11.16173 -10.86647 -10.61238 -10.03148 -9.63470 -8.23948 -6.38682 -0.82606 1.37756 1.43146 1.43498 1.50774 1.54393 2.08466 2.40557 2.77795 2.94884 3.06594 3.09093 3.23188 3.56599 3.67969 4.00727 4.03464 4.10945 4.16650 4.24198 4.30665 4.36411 4.42203 4.45008 4.56020 4.58689 4.66835 4.78943 4.85975 4.88348 4.91305 5.03199 5.12766 5.24392 5.25956 5.32952 5.35779 5.41408 5.54536 5.58306 5.65624 5.79100 6.11518 6.22018 6.77482 7.12467 7.31868 8.88426 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.016739 B = 0.003622 C = 0.003471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1672.326700 B = 7727.763993 C = 8064.291724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.653 4.653 2 S 2.591 3.409 3 O -0.983 6.983 4 O -1.001 7.001 5 N -0.982 5.982 6 C 0.107 3.893 7 C -0.124 4.124 8 C -0.119 4.119 9 C -0.111 4.111 10 C 0.193 3.807 11 C -0.216 4.216 12 C 0.514 3.486 13 O -0.582 6.582 14 N -0.611 5.611 15 C 0.143 3.857 16 C 0.020 3.980 17 C -0.544 4.544 18 H 0.073 0.927 19 C -0.003 4.003 20 N -0.937 5.937 21 Si 0.976 3.024 22 H -0.267 1.267 23 H -0.285 1.285 24 H -0.257 1.257 25 C 0.092 3.908 26 H 0.169 0.831 27 H 0.149 0.851 28 H 0.147 0.853 29 H 0.102 0.898 30 H 0.067 0.933 31 H 0.085 0.915 32 H 0.091 0.909 33 H 0.088 0.912 34 H 0.060 0.940 35 H 0.106 0.894 36 H 0.076 0.924 37 H 0.126 0.874 38 H 0.157 0.843 39 H 0.096 0.904 40 H 0.063 0.937 41 H -0.031 1.031 42 H -0.008 1.008 43 H 0.264 0.736 44 H 0.110 0.890 45 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.010 19.606 15.291 29.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.808 4.808 2 S 2.691 3.309 3 O -0.973 6.973 4 O -0.991 6.991 5 N -0.819 5.819 6 C -0.017 4.017 7 C -0.163 4.163 8 C -0.156 4.156 9 C -0.150 4.150 10 C 0.104 3.896 11 C -0.256 4.256 12 C 0.302 3.698 13 O -0.463 6.463 14 N -0.343 5.343 15 C 0.021 3.979 16 C -0.018 4.018 17 C -0.583 4.583 18 H 0.091 0.909 19 C -0.201 4.201 20 N -0.577 5.577 21 Si 0.799 3.201 22 H -0.192 1.192 23 H -0.210 1.210 24 H -0.182 1.182 25 C -0.032 4.032 26 H 0.187 0.813 27 H 0.168 0.832 28 H 0.165 0.835 29 H 0.121 0.879 30 H 0.086 0.914 31 H 0.104 0.896 32 H 0.110 0.890 33 H 0.106 0.894 34 H 0.079 0.921 35 H 0.124 0.876 36 H 0.094 0.906 37 H 0.143 0.857 38 H 0.174 0.826 39 H 0.114 0.886 40 H 0.081 0.919 41 H -0.012 1.012 42 H 0.010 0.990 43 H 0.073 0.927 44 H 0.128 0.872 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -14.487 19.396 14.203 28.068 hybrid contribution 0.589 -1.140 -0.753 1.488 sum -13.898 18.256 13.451 26.596 Atomic orbital electron populations 1.30575 1.21282 1.14389 1.14533 1.05222 0.80352 0.72548 0.72734 1.93524 1.80088 1.38038 1.85689 1.93572 1.79454 1.61719 1.64381 1.57338 1.72587 1.18370 1.33623 1.21811 0.95867 0.94819 0.89201 1.21878 1.01883 0.97101 0.95431 1.21565 1.00437 0.95176 0.98424 1.21806 1.00070 1.02373 0.90776 1.20350 0.92644 0.80285 0.96315 1.23790 1.04425 0.94229 1.03136 1.21115 0.81182 0.90791 0.76717 1.90671 1.63091 1.45163 1.47380 1.48608 1.20831 1.09897 1.54978 1.21424 0.93168 0.84018 0.99275 1.19248 0.93433 0.96058 0.93086 1.21524 1.21096 1.07424 1.08213 0.90931 1.26122 0.98344 1.01139 0.94510 1.70159 1.35433 1.40116 1.11955 0.85348 0.78117 0.78476 0.78155 1.19177 1.21023 1.18181 1.22715 0.97756 0.81774 1.00991 0.81289 0.83225 0.83498 0.87944 0.91418 0.89639 0.89040 0.89355 0.92119 0.87559 0.90575 0.85689 0.82560 0.88579 0.91893 1.01243 0.98996 0.92747 0.87152 0.92855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -5.53 10.39 113.37 1.18 -4.35 16 2 S 2.59 53.18 5.46 -56.49 -0.31 52.87 16 3 O -0.98 -24.27 16.23 -127.65 -2.07 -26.35 16 4 O -1.00 -32.91 15.29 -127.65 -1.95 -34.86 16 5 N -0.98 -17.25 2.88 -469.15 -1.35 -18.60 16 6 C 0.11 1.44 6.31 86.33 0.54 1.99 16 7 C -0.12 -0.89 6.05 30.68 0.19 -0.70 16 8 C -0.12 -1.02 5.78 30.68 0.18 -0.84 16 9 C -0.11 -1.28 4.73 30.42 0.14 -1.14 16 10 C 0.19 3.81 0.82 4.10 0.00 3.81 16 11 C -0.22 -5.35 3.93 30.37 0.12 -5.23 16 12 C 0.51 19.91 8.04 87.94 0.71 20.62 16 13 O -0.58 -28.09 17.60 -3.02 -0.05 -28.14 16 14 N -0.61 -23.24 2.94 -817.91 -2.40 -25.64 16 15 C 0.14 6.31 5.87 86.38 0.51 6.82 16 16 C 0.02 1.14 5.30 29.85 0.16 1.30 16 17 C -0.54 -32.32 9.11 25.60 0.23 -32.09 16 18 H 0.07 3.97 7.74 -2.91 -0.02 3.95 16 19 C 0.00 -0.20 5.46 84.65 0.46 0.26 16 20 N -0.94 -60.84 13.29 21.45 0.28 -60.55 16 21 Si 0.98 45.73 29.54 68.60 2.03 47.76 16 22 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 23 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 24 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 25 C 0.09 2.60 6.34 86.65 0.55 3.15 16 26 H 0.17 0.28 8.14 -2.39 -0.02 0.26 16 27 H 0.15 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.15 1.07 5.11 -2.39 -0.01 1.06 16 29 H 0.10 1.40 6.58 -2.39 -0.02 1.38 16 30 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.08 0.35 8.14 -2.39 -0.02 0.33 16 32 H 0.09 0.44 8.14 -2.39 -0.02 0.42 16 33 H 0.09 0.50 8.14 -2.38 -0.02 0.48 16 34 H 0.06 0.65 6.77 -2.39 -0.02 0.64 16 35 H 0.11 0.60 8.11 -2.39 -0.02 0.59 16 36 H 0.08 1.03 8.12 -2.39 -0.02 1.01 16 37 H 0.13 3.41 3.37 -16.39 -0.06 3.35 16 38 H 0.16 2.36 6.88 -2.39 -0.02 2.34 16 39 H 0.10 3.64 8.14 -2.39 -0.02 3.62 16 40 H 0.06 2.89 7.93 -2.39 -0.02 2.87 16 41 H -0.03 -2.08 8.14 -2.39 -0.02 -2.10 16 42 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 43 H 0.26 16.06 8.31 -92.71 -0.77 15.29 16 44 H 0.11 2.46 6.53 -2.39 -0.02 2.45 16 45 H 0.05 1.80 8.07 -2.39 -0.02 1.78 16 Total: -1.00 -93.22 359.46 0.08 -93.14 By element: Atomic # 1 Polarization: 5.83 SS G_CDS: 0.94 Total: 6.77 kcal Atomic # 6 Polarization: -11.37 SS G_CDS: 4.97 Total: -6.40 kcal Atomic # 7 Polarization: -101.32 SS G_CDS: -3.47 Total: -104.80 kcal Atomic # 8 Polarization: -85.27 SS G_CDS: -4.08 Total: -89.34 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 2.03 Total: 47.76 kcal Atomic # 16 Polarization: 53.18 SS G_CDS: -0.31 Total: 52.87 kcal Total: -93.22 0.08 -93.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274905028.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.936 kcal (2) G-P(sol) polarization free energy of solvation -93.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds