Wall clock time and date at job start Tue Mar 31 2020 05:09:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 S 1.81403 * 109.46796 * 2 1 4 4 O 1.42095 * 110.54547 * 68.37057 * 3 2 1 5 5 O 1.42107 * 110.54105 * 291.61941 * 3 2 1 6 6 N 1.65598 * 104.44915 * 180.02562 * 3 2 1 7 7 C 1.47540 * 125.66834 * 270.02218 * 6 3 2 8 8 C 1.55140 * 104.97525 * 203.88058 * 7 6 3 9 9 C 1.53890 * 101.44769 * 324.25499 * 8 7 6 10 10 C 1.53368 * 111.15588 * 154.66293 * 9 8 7 11 11 C 1.54764 * 101.44263 * 145.08104 * 10 9 8 12 12 N 1.46916 * 105.53465 * 335.70450 * 11 10 9 13 13 C 1.46499 * 124.37748 * 196.73433 * 12 11 10 14 14 C 1.53000 * 109.46840 * 89.99860 * 13 12 11 15 15 C 1.50703 * 109.46912 * 180.02562 * 14 13 12 16 16 H 1.07996 * 119.99751 * 0.02562 * 15 14 13 17 17 C 1.37877 * 120.00001 * 180.02562 * 15 14 13 18 18 N 1.31517 * 120.00094 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99955 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.46999 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.46942 * 119.99666 * 19 17 15 22 22 H 1.48504 * 109.46979 * 239.99580 * 19 17 15 23 23 C 1.34839 * 111.24732 * 17.00232 * 12 11 10 24 24 O 1.21279 * 125.18266 * 178.60959 * 23 12 11 25 25 C 1.47342 * 125.67442 * 89.99606 * 6 3 2 26 26 H 1.09001 * 109.46864 * 60.00954 * 1 2 3 27 27 H 1.09007 * 109.46811 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47488 * 299.99831 * 1 2 3 29 29 H 1.08993 * 109.47189 * 239.99711 * 2 1 3 30 30 H 1.08995 * 109.46972 * 119.99468 * 2 1 3 31 31 H 1.09006 * 110.34015 * 322.75031 * 7 6 3 32 32 H 1.08998 * 110.34310 * 85.00163 * 7 6 3 33 33 H 1.08998 * 111.02478 * 206.21743 * 8 7 6 34 34 H 1.08996 * 111.03592 * 82.29775 * 8 7 6 35 35 H 1.08997 * 111.02735 * 27.04167 * 10 9 8 36 36 H 1.08997 * 111.02626 * 263.12530 * 10 9 8 37 37 H 1.08994 * 110.23303 * 216.69385 * 11 10 9 38 38 H 1.08996 * 110.23444 * 94.71585 * 11 10 9 39 39 H 1.09001 * 109.46813 * 330.00134 * 13 12 11 40 40 H 1.08992 * 109.47397 * 210.00196 * 13 12 11 41 41 H 1.09002 * 109.47398 * 300.00326 * 14 13 12 42 42 H 1.09001 * 109.47194 * 60.00507 * 14 13 12 43 43 H 0.97000 * 120.00333 * 179.97438 * 18 17 15 44 44 H 1.08999 * 109.96862 * 58.72281 * 25 6 3 45 45 H 1.08994 * 109.97266 * 297.45715 * 25 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7103 0.0000 4 8 1.8384 2.3439 1.2369 5 8 1.8385 2.3438 -1.2371 6 7 3.7842 1.5654 -0.0007 7 6 4.6417 1.4895 1.1975 8 6 6.0365 1.9764 0.7239 9 6 6.0872 1.4123 -0.7070 10 6 7.0305 2.2350 -1.5933 11 6 7.6288 1.1379 -2.5063 12 7 7.5037 -0.1151 -1.7496 13 6 8.2390 -1.3443 -2.0573 14 6 9.5634 -1.3515 -1.2914 15 6 10.3201 -2.6156 -1.6085 16 1 9.8987 -3.3410 -2.2886 17 6 11.5504 -2.8460 -1.0303 18 7 12.0638 -1.9624 -0.2024 19 14 12.4887 -4.4126 -1.4239 20 1 11.7005 -5.2357 -2.3759 21 1 13.7972 -4.0657 -2.0343 22 1 12.7140 -5.1820 -0.1738 23 6 6.6202 0.0106 -0.7387 24 8 6.3065 -0.8740 0.0293 25 6 4.6397 1.4904 -1.1980 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3633 -1.0278 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5137 0.8900 31 1 4.2578 2.1439 1.9802 32 1 4.7008 0.4621 1.5567 33 1 6.8290 1.5515 1.3400 34 1 6.0895 3.0650 0.7172 35 1 7.8072 2.7149 -0.9979 36 1 6.4767 2.9705 -2.1767 37 1 8.6777 1.3503 -2.7131 38 1 7.0656 1.0738 -3.4373 39 1 8.4382 -1.3900 -3.1280 40 1 7.6434 -2.2077 -1.7614 41 1 10.1591 -0.4879 -1.5873 42 1 9.3642 -1.3058 -0.2207 43 1 12.9292 -2.1247 0.2047 44 1 4.5019 2.3814 -1.8104 45 1 4.3940 0.5995 -1.7759 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274908325.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:46 Heat of formation + Delta-G solvation = -104.986687 kcal Electronic energy + Delta-G solvation = -27264.037439 eV Core-core repulsion = 23408.523960 eV Total energy + Delta-G solvation = -3855.513479 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.98452 -37.57566 -37.34040 -36.18051 -36.09135 -33.85568 -33.46560 -32.33756 -30.30688 -29.18842 -28.04875 -25.27747 -24.53235 -23.87520 -22.48388 -21.87446 -20.46754 -19.16003 -18.73807 -18.00259 -16.91962 -16.67405 -16.46613 -15.95030 -15.60653 -15.06679 -14.81080 -14.70961 -14.45026 -14.05514 -13.81498 -13.62928 -13.35893 -13.18700 -12.86610 -12.81057 -12.72980 -12.57004 -12.35700 -12.28147 -12.22671 -12.11518 -11.92003 -11.78559 -11.50719 -11.35824 -11.02119 -10.95718 -10.88240 -10.82570 -10.70888 -10.05004 -9.92718 -9.39302 -9.17655 -9.14191 -8.42489 -8.09351 -6.07372 -4.10977 -0.03069 2.36883 2.84631 3.27162 3.34328 3.37709 3.46391 3.56944 3.78921 4.17696 4.23209 4.30172 4.34003 4.41367 4.50651 4.76395 4.83387 4.95281 5.11021 5.17627 5.20076 5.29085 5.33629 5.38420 5.42889 5.47206 5.53004 5.60225 5.69249 5.76131 5.82964 5.87997 5.94086 6.02195 6.04495 6.14155 6.39863 6.74338 6.91521 7.42408 7.60933 7.77800 7.91926 8.27909 8.57049 8.95863 9.53539 11.03991 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.023126 B = 0.002741 C = 0.002647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.464774 B =10212.548102 C =10574.576693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.634 4.634 3 S 2.627 3.373 4 O -0.952 6.952 5 O -0.954 6.954 6 N -1.012 6.012 7 C 0.115 3.885 8 C -0.103 4.103 9 C -0.110 4.110 10 C -0.120 4.120 11 C 0.099 3.901 12 N -0.610 5.610 13 C 0.128 3.872 14 C 0.012 3.988 15 C -0.523 4.523 16 H 0.057 0.943 17 C 0.059 3.941 18 N -0.892 5.892 19 Si 0.895 3.105 20 H -0.272 1.272 21 H -0.284 1.284 22 H -0.283 1.283 23 C 0.527 3.473 24 O -0.524 6.524 25 C 0.149 3.851 26 H 0.071 0.929 27 H 0.082 0.918 28 H 0.071 0.929 29 H 0.132 0.868 30 H 0.134 0.866 31 H 0.085 0.915 32 H 0.079 0.921 33 H 0.091 0.909 34 H 0.086 0.914 35 H 0.090 0.910 36 H 0.092 0.908 37 H 0.083 0.917 38 H 0.068 0.932 39 H 0.066 0.934 40 H 0.070 0.930 41 H 0.017 0.983 42 H 0.020 0.980 43 H 0.261 0.739 44 H 0.086 0.914 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.805 10.103 -1.882 21.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.763 4.763 3 S 2.722 3.278 4 O -0.943 6.943 5 O -0.944 6.944 6 N -0.850 5.850 7 C -0.009 4.009 8 C -0.142 4.142 9 C -0.115 4.115 10 C -0.158 4.158 11 C -0.025 4.025 12 N -0.343 5.343 13 C 0.008 3.992 14 C -0.025 4.025 15 C -0.562 4.562 16 H 0.076 0.924 17 C -0.143 4.143 18 N -0.531 5.531 19 Si 0.722 3.278 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.209 1.209 23 C 0.313 3.687 24 O -0.400 6.400 25 C 0.023 3.977 26 H 0.090 0.910 27 H 0.101 0.899 28 H 0.090 0.910 29 H 0.150 0.850 30 H 0.152 0.848 31 H 0.104 0.896 32 H 0.097 0.903 33 H 0.110 0.890 34 H 0.105 0.895 35 H 0.109 0.891 36 H 0.111 0.889 37 H 0.102 0.898 38 H 0.086 0.914 39 H 0.084 0.916 40 H 0.089 0.911 41 H 0.036 0.964 42 H 0.039 0.961 43 H 0.071 0.929 44 H 0.104 0.896 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -19.347 10.379 -1.408 22.000 hybrid contribution 0.971 -1.717 -0.244 1.987 sum -18.376 8.662 -1.651 20.382 Atomic orbital electron populations 1.21505 0.90569 1.05123 1.03296 1.30563 1.06964 1.26765 1.12040 1.04573 0.71770 0.77315 0.74183 1.93586 1.82850 1.72585 1.45264 1.93586 1.82963 1.72615 1.45273 1.58656 1.22987 1.89912 1.13472 1.22198 0.89686 1.02354 0.86705 1.22535 0.97184 1.01094 0.93392 1.21573 0.95531 0.96000 0.98383 1.22582 0.98624 0.97019 0.97578 1.22140 1.02345 0.83423 0.94582 1.48690 1.41935 1.13159 1.30534 1.21816 0.94623 0.82936 0.99861 1.19402 0.89843 0.97355 0.95940 1.21118 1.03070 1.04591 1.27383 0.92443 1.25001 0.97550 0.96758 0.94949 1.69977 1.18151 1.34971 1.29998 0.86499 0.79737 0.83304 0.78233 1.19665 1.20966 1.20943 1.19995 0.79229 0.88755 0.80731 1.90684 1.61629 1.45709 1.42027 1.21429 0.87322 1.02261 0.86646 0.91019 0.89946 0.90992 0.85007 0.84809 0.89644 0.90289 0.89033 0.89528 0.89133 0.88926 0.89840 0.91353 0.91559 0.91147 0.96431 0.96133 0.92950 0.89574 0.91527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.92 37.16 0.37 -0.65 16 2 C -0.63 -5.09 6.90 37.16 0.26 -4.84 16 3 S 2.63 27.94 5.65 -107.50 -0.61 27.33 16 4 O -0.95 -12.48 17.29 -57.54 -0.99 -13.48 16 5 O -0.95 -12.35 17.60 -57.54 -1.01 -13.36 16 6 N -1.01 -11.11 3.63 -111.69 -0.41 -11.52 16 7 C 0.12 1.28 6.84 -2.34 -0.02 1.27 16 8 C -0.10 -1.14 5.88 -25.14 -0.15 -1.28 16 9 C -0.11 -1.33 0.67 -155.32 -0.10 -1.43 16 10 C -0.12 -1.17 6.26 -25.61 -0.16 -1.33 16 11 C 0.10 1.19 7.37 -2.89 -0.02 1.17 16 12 N -0.61 -10.23 2.95 -172.54 -0.51 -10.74 16 13 C 0.13 2.57 5.89 -4.04 -0.02 2.54 16 14 C 0.01 0.32 5.30 -27.88 -0.15 0.17 16 15 C -0.52 -14.47 9.11 -34.44 -0.31 -14.78 16 16 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 17 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 18 N -0.89 -26.47 13.29 55.43 0.74 -25.73 16 19 Si 0.89 21.33 29.54 -169.99 -5.02 16.31 16 20 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 22 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 23 C 0.53 8.87 6.63 -11.30 -0.07 8.80 16 24 O -0.52 -10.72 16.77 5.56 0.09 -10.63 16 25 C 0.15 1.62 6.16 -3.56 -0.02 1.60 16 26 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.08 0.47 8.14 -51.92 -0.42 0.05 16 28 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.13 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.13 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.09 0.85 7.68 -51.93 -0.40 0.46 16 32 H 0.08 0.95 7.65 -51.93 -0.40 0.55 16 33 H 0.09 1.12 8.00 -51.93 -0.42 0.70 16 34 H 0.09 0.77 8.06 -51.93 -0.42 0.35 16 35 H 0.09 0.85 7.94 -51.93 -0.41 0.44 16 36 H 0.09 0.65 7.43 -51.93 -0.39 0.26 16 37 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 38 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 39 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 40 H 0.07 1.50 7.93 -51.93 -0.41 1.09 16 41 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 44 H 0.09 0.80 7.41 -51.93 -0.39 0.41 16 45 H 0.07 0.71 7.83 -51.93 -0.41 0.30 16 LS Contribution 377.84 15.07 5.69 5.69 Total: -1.00 -36.26 377.84 -9.93 -46.19 By element: Atomic # 1 Polarization: 4.53 SS G_CDS: -7.40 Total: -2.87 kcal Atomic # 6 Polarization: -6.69 SS G_CDS: -0.50 Total: -7.20 kcal Atomic # 7 Polarization: -47.82 SS G_CDS: -0.18 Total: -48.00 kcal Atomic # 8 Polarization: -35.55 SS G_CDS: -1.91 Total: -37.47 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Atomic # 16 Polarization: 27.94 SS G_CDS: -0.61 Total: 27.33 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -36.26 -9.93 -46.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274908325.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.793 kcal (2) G-P(sol) polarization free energy of solvation -36.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds