Wall clock time and date at job start Tue Mar 31 2020 04:51:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.47450 * 2 1 4 4 C 1.50700 * 109.47203 * 120.00129 * 2 1 3 5 5 O 1.21277 * 120.00047 * 99.99788 * 4 2 1 6 6 N 1.34776 * 119.99898 * 280.00534 * 4 2 1 7 7 C 1.46502 * 120.00293 * 179.97438 * 6 4 2 8 8 H 1.09001 * 115.54923 * 350.58244 * 7 6 4 9 9 C 1.53028 * 117.50286 * 136.26275 * 7 6 4 10 10 C 1.52808 * 117.50715 * 204.89311 * 7 6 4 11 11 C 1.53183 * 117.71708 * 144.89477 * 10 7 6 12 12 C 1.53353 * 108.77056 * 158.89225 * 11 10 7 13 13 N 1.46842 * 108.81327 * 51.31080 * 12 11 10 14 14 C 1.36941 * 120.38253 * 123.12301 * 13 12 11 15 15 H 1.08002 * 119.99839 * 331.79737 * 14 13 12 16 16 C 1.38809 * 120.00181 * 151.79355 * 14 13 12 17 17 N 1.31611 * 119.99970 * 159.29854 * 16 14 13 18 18 Si 1.86797 * 119.99855 * 339.30457 * 16 14 13 19 19 H 1.48497 * 109.47489 * 94.24648 * 18 16 14 20 20 H 1.48501 * 109.46977 * 214.24465 * 18 16 14 21 21 H 1.48503 * 109.47517 * 334.24316 * 18 16 14 22 22 C 1.46842 * 119.23557 * 303.09516 * 13 12 11 23 23 C 1.53192 * 117.71309 * 0.13927 * 10 7 6 24 24 S 1.81399 * 109.47266 * 239.99999 * 2 1 3 25 25 C 1.81402 * 101.92203 * 60.00358 * 24 2 1 26 26 O 1.42094 * 108.57815 * 305.51427 * 24 2 1 27 27 O 1.42110 * 108.57697 * 174.48765 * 24 2 1 28 28 H 1.09006 * 109.47023 * 60.00028 * 1 2 3 29 29 H 1.08996 * 109.47333 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47212 * 300.00225 * 1 2 3 31 31 H 0.97006 * 120.00059 * 359.97438 * 6 4 2 32 32 H 1.09003 * 117.50550 * 214.95372 * 9 7 6 33 33 H 1.09003 * 117.50506 * 0.02562 * 9 7 6 34 34 H 1.08999 * 109.58795 * 278.68323 * 11 10 7 35 35 H 1.09002 * 109.58332 * 39.10510 * 11 10 7 36 36 H 1.08997 * 109.58162 * 291.51219 * 12 11 10 37 37 H 1.09002 * 109.57625 * 171.11234 * 12 11 10 38 38 H 0.97002 * 120.00392 * 180.02562 * 17 16 14 39 39 H 1.09000 * 109.58209 * 297.11392 * 22 13 12 40 40 H 1.08991 * 109.58330 * 176.70711 * 22 13 12 41 41 H 1.09002 * 109.58466 * 320.90051 * 23 10 7 42 42 H 1.09003 * 109.58754 * 81.32432 * 23 10 7 43 43 H 1.08995 * 109.46736 * 299.99652 * 25 24 2 44 44 H 1.09001 * 109.47103 * 179.97438 * 25 24 2 45 45 H 1.08996 * 109.47014 * 59.99601 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 2.4064 -1.8617 1.1557 6 7 2.0658 -0.0665 2.4139 7 6 2.5536 -0.7572 3.6103 8 1 2.7194 -1.8288 3.4996 9 6 3.4998 0.0126 4.5342 10 6 2.0576 -0.2562 4.9660 11 6 1.8272 -1.2945 6.0684 12 6 1.8580 -0.5858 7.4280 13 7 0.9418 0.5609 7.3852 14 6 -0.0772 0.6676 8.2938 15 1 -0.5091 -0.2221 8.7278 16 6 -0.5549 1.9193 8.6571 17 7 -1.7545 2.0378 9.1854 18 14 0.5047 3.4353 8.3960 19 1 0.1647 4.0582 7.0916 20 1 0.2544 4.4084 9.4894 21 1 1.9374 3.0445 8.3995 22 6 1.1312 1.5922 6.3572 23 6 1.0856 0.9277 4.9759 24 16 2.1347 -0.8551 -1.4811 25 6 1.4230 0.1515 -2.8118 26 8 1.5479 -2.1484 -1.5284 27 8 3.5497 -0.7330 -1.5284 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.7668 0.8545 2.4736 32 1 4.2878 -0.5527 5.0320 33 1 3.7591 1.0331 4.2523 34 1 0.8566 -1.7696 5.9258 35 1 2.6141 -2.0479 6.0310 36 1 2.8697 -0.2374 7.6355 37 1 1.5407 -1.2780 8.2080 38 1 -2.0886 2.9125 9.4390 39 1 2.0980 2.0754 6.4982 40 1 0.3357 2.3335 6.4324 41 1 1.3803 1.6489 4.2135 42 1 0.0749 0.5725 4.7745 43 1 0.3362 0.1470 -2.7292 44 1 1.7161 -0.2621 -3.7768 45 1 1.7895 1.1747 -2.7291 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001490597000.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:51:43 Heat of formation + Delta-G solvation = -49.480977 kcal Electronic energy + Delta-G solvation = -27040.556920 eV Core-core repulsion = 23187.450349 eV Total energy + Delta-G solvation = -3853.106571 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 2.87 seconds Orbital eigenvalues (eV) -40.40177 -38.82281 -37.31804 -36.29951 -35.85921 -34.28382 -32.98525 -31.66246 -30.61890 -29.92207 -28.72612 -25.57808 -24.24568 -23.13885 -22.44873 -21.35996 -20.61290 -19.14696 -18.55463 -17.93420 -17.47011 -16.62127 -16.41898 -16.20679 -15.77212 -15.39657 -15.25904 -14.51121 -14.24262 -14.07545 -13.87684 -13.78625 -13.73249 -13.57851 -13.07788 -12.87085 -12.81617 -12.51916 -12.49243 -12.33990 -12.25330 -12.08132 -12.03261 -11.79367 -11.41398 -11.33733 -10.98544 -10.84894 -10.65690 -10.46217 -10.31013 -10.07502 -9.85453 -9.60341 -9.50531 -8.87029 -8.56167 -6.99682 -5.99707 -3.35628 -0.51029 2.11039 2.30684 2.60201 3.24352 3.42229 3.43481 3.46283 3.56216 3.91677 4.01396 4.09462 4.29846 4.41786 4.47396 4.56425 4.71678 4.84300 4.84603 4.90568 5.04387 5.05590 5.16864 5.23763 5.36295 5.52030 5.63013 5.78470 5.84816 5.85974 5.98272 6.08882 6.24877 6.26154 6.31995 6.36886 6.54259 6.62183 6.64439 6.89825 7.11619 7.78245 7.93381 8.29321 8.90835 9.67722 10.05686 11.16355 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.022652 B = 0.002786 C = 0.002665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.810116 B =10048.040419 C =10504.800917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.617 4.617 3 H 0.155 0.845 4 C 0.546 3.454 5 O -0.526 6.526 6 N -0.682 5.682 7 C 0.069 3.931 8 H 0.138 0.862 9 C -0.182 4.182 10 C -0.100 4.100 11 C -0.099 4.099 12 C 0.152 3.848 13 N -0.604 5.604 14 C -0.260 4.260 15 H 0.085 0.915 16 C 0.023 3.977 17 N -0.908 5.908 18 Si 0.882 3.118 19 H -0.290 1.290 20 H -0.303 1.303 21 H -0.270 1.270 22 C 0.132 3.868 23 C -0.099 4.099 24 S 2.451 3.549 25 C -0.662 4.662 26 O -0.911 6.911 27 O -0.928 6.928 28 H 0.081 0.919 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.405 0.595 32 H 0.102 0.898 33 H 0.094 0.906 34 H 0.069 0.931 35 H 0.059 0.941 36 H 0.025 0.975 37 H 0.065 0.935 38 H 0.262 0.738 39 H 0.026 0.974 40 H 0.072 0.928 41 H 0.047 0.953 42 H 0.072 0.928 43 H 0.132 0.868 44 H 0.133 0.867 45 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.411 -0.168 -22.548 23.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.725 4.725 3 H 0.173 0.827 4 C 0.329 3.671 5 O -0.403 6.403 6 N -0.331 5.331 7 C -0.036 4.036 8 H 0.155 0.845 9 C -0.220 4.220 10 C -0.101 4.101 11 C -0.138 4.138 12 C 0.026 3.974 13 N -0.327 5.327 14 C -0.389 4.389 15 H 0.103 0.897 16 C -0.176 4.176 17 N -0.551 5.551 18 Si 0.713 3.287 19 H -0.218 1.218 20 H -0.232 1.232 21 H -0.195 1.195 22 C 0.006 3.994 23 C -0.138 4.138 24 S 2.627 3.373 25 C -0.811 4.811 26 O -0.908 6.908 27 O -0.925 6.925 28 H 0.100 0.900 29 H 0.105 0.895 30 H 0.105 0.895 31 H 0.240 0.760 32 H 0.121 0.879 33 H 0.112 0.888 34 H 0.087 0.913 35 H 0.077 0.923 36 H 0.043 0.957 37 H 0.084 0.916 38 H 0.072 0.928 39 H 0.044 0.956 40 H 0.090 0.910 41 H 0.066 0.934 42 H 0.091 0.909 43 H 0.151 0.849 44 H 0.152 0.848 45 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 7.067 -1.631 -22.531 23.670 hybrid contribution -0.123 2.473 -0.029 2.476 sum 6.944 0.842 -22.561 23.620 Atomic orbital electron populations 1.21650 0.87339 1.05495 1.05301 1.30738 1.09225 1.15471 1.17115 0.82697 1.19070 0.78018 0.86315 0.83650 1.90864 1.47814 1.16360 1.85230 1.45236 1.64276 1.16450 1.07094 1.21981 1.03104 0.97203 0.81302 0.84455 1.23600 0.94165 1.01461 1.02770 1.21969 0.95141 0.99177 0.93844 1.21693 1.01426 0.95528 0.95195 1.20888 0.92821 0.89690 0.93980 1.44279 1.33158 1.23094 1.32180 1.18949 1.08077 0.93706 1.18130 0.89708 1.25307 0.96568 0.97502 0.98226 1.69837 1.15542 1.23873 1.45820 0.86941 0.82222 0.83612 0.75920 1.21831 1.23160 1.19490 1.21270 0.99060 0.91981 0.87054 1.21652 0.98381 0.94722 0.99081 1.07435 0.75939 0.76682 0.77252 1.30402 1.14409 1.16677 1.19643 1.93600 1.79085 1.33262 1.84863 1.93600 1.26794 1.86735 1.85416 0.90007 0.89471 0.89455 0.75950 0.87944 0.88774 0.91254 0.92267 0.95749 0.91601 0.92767 0.95582 0.90978 0.93422 0.90949 0.84920 0.84813 0.85169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 45. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.78 8.93 37.16 0.33 -0.45 16 2 C -0.62 -4.55 3.10 -27.88 -0.09 -4.64 16 3 H 0.16 0.50 8.14 -51.92 -0.42 0.08 16 4 C 0.55 6.71 7.00 -10.99 -0.08 6.63 16 5 O -0.53 -8.68 15.21 -3.36 -0.05 -8.73 16 6 N -0.68 -7.76 5.35 -53.89 -0.29 -8.05 16 7 C 0.07 0.91 6.13 -68.01 -0.42 0.50 16 8 H 0.14 1.95 7.40 -51.93 -0.38 1.57 16 9 C -0.18 -2.30 9.87 -26.76 -0.26 -2.56 16 10 C -0.10 -1.46 1.94 -154.45 -0.30 -1.76 16 11 C -0.10 -1.56 5.83 -26.45 -0.15 -1.71 16 12 C 0.15 2.87 6.52 -3.67 -0.02 2.84 16 13 N -0.60 -13.76 2.71 -172.26 -0.47 -14.23 16 14 C -0.26 -7.08 10.00 -15.06 -0.15 -7.23 16 15 H 0.09 2.47 8.06 -52.49 -0.42 2.05 16 16 C 0.02 0.64 5.23 -17.43 -0.09 0.55 16 17 N -0.91 -27.31 13.97 55.49 0.78 -26.54 16 18 Si 0.88 21.71 24.40 -169.99 -4.15 17.57 16 19 H -0.29 -6.81 6.66 56.52 0.38 -6.43 16 20 H -0.30 -7.66 7.11 56.52 0.40 -7.26 16 21 H -0.27 -6.54 6.65 56.52 0.38 -6.16 16 22 C 0.13 2.71 4.23 -3.68 -0.02 2.69 16 23 C -0.10 -1.58 5.37 -26.45 -0.14 -1.72 16 24 S 2.45 21.53 4.32 -107.50 -0.46 21.06 16 25 C -0.66 -2.18 10.17 101.05 1.03 -1.15 16 26 O -0.91 -11.79 17.40 -62.66 -1.09 -12.88 16 27 O -0.93 -11.76 18.10 -57.83 -1.05 -12.81 16 28 H 0.08 0.15 6.56 -51.93 -0.34 -0.19 16 29 H 0.09 0.61 8.06 -51.93 -0.42 0.19 16 30 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.40 3.62 7.12 -40.82 -0.29 3.33 16 32 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.06 0.79 8.10 -51.93 -0.42 0.37 16 36 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 37 H 0.07 1.25 7.92 -51.93 -0.41 0.83 16 38 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 39 H 0.03 0.53 7.27 -51.93 -0.38 0.15 16 40 H 0.07 1.63 4.31 -51.93 -0.22 1.41 16 41 H 0.05 0.61 6.75 -51.93 -0.35 0.26 16 42 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 43 H 0.13 0.17 6.87 -51.93 -0.36 -0.19 16 44 H 0.13 0.36 8.14 -51.92 -0.42 -0.06 16 45 H 0.13 0.14 8.14 -51.93 -0.42 -0.28 16 LS Contribution 366.18 15.07 5.52 5.52 Total: -1.00 -38.53 366.18 -8.61 -47.14 By element: Atomic # 1 Polarization: 6.93 SS G_CDS: -6.99 Total: -0.06 kcal Atomic # 6 Polarization: -7.63 SS G_CDS: -0.36 Total: -8.00 kcal Atomic # 7 Polarization: -48.83 SS G_CDS: 0.02 Total: -48.81 kcal Atomic # 8 Polarization: -32.23 SS G_CDS: -2.19 Total: -34.42 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.15 Total: 17.57 kcal Atomic # 16 Polarization: 21.53 SS G_CDS: -0.46 Total: 21.06 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -38.53 -8.61 -47.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490597000.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.339 kcal (2) G-P(sol) polarization free energy of solvation -38.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.87 seconds