Wall clock time and date at job start Tue Mar 31 2020 05:21:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36944 * 119.99950 * 2 1 4 4 H 1.07996 * 119.99702 * 202.11806 * 3 2 1 5 5 C 1.38810 * 119.99813 * 22.11391 * 3 2 1 6 6 N 1.31618 * 119.99988 * 14.14273 * 5 3 2 7 7 Si 1.86797 * 120.00033 * 194.13742 * 5 3 2 8 8 H 1.48495 * 109.47254 * 90.00060 * 7 5 3 9 9 H 1.48502 * 109.47115 * 210.00214 * 7 5 3 10 10 H 1.48507 * 109.47075 * 329.99947 * 7 5 3 11 11 C 1.46501 * 120.00274 * 180.02562 * 2 1 3 12 12 C 1.53004 * 109.47145 * 89.99913 * 11 2 1 13 13 H 1.09003 * 109.49382 * 305.06573 * 12 11 2 14 14 C 1.53044 * 109.52373 * 65.14637 * 12 11 2 15 15 C 1.53039 * 109.53580 * 181.33167 * 14 12 11 16 16 C 1.53619 * 109.24291 * 298.51202 * 15 14 12 17 17 N 1.46922 * 108.54507 * 54.85669 * 16 15 14 18 18 C 1.34776 * 120.63133 * 126.36735 * 17 16 15 19 19 O 1.21284 * 120.00081 * 179.71929 * 18 17 16 20 20 C 1.50703 * 120.00003 * 359.72416 * 18 17 16 21 21 C 1.53043 * 113.15135 * 180.02562 * 20 18 17 22 22 S 1.81423 * 89.93269 * 148.12365 * 21 20 18 23 23 O 1.42102 * 112.75134 * 79.54198 * 22 21 20 24 24 O 1.42098 * 112.75571 * 223.28696 * 22 21 20 25 25 C 1.53040 * 113.14848 * 280.37001 * 20 18 17 26 26 C 1.46928 * 118.74125 * 306.09441 * 17 16 15 27 27 H 1.09004 * 109.47011 * 275.12814 * 1 2 3 28 28 H 1.08998 * 109.47146 * 35.13161 * 1 2 3 29 29 H 1.09000 * 109.46729 * 155.13254 * 1 2 3 30 30 H 0.97001 * 119.99986 * 180.02562 * 6 5 3 31 31 H 1.08999 * 109.46707 * 329.99972 * 11 2 1 32 32 H 1.08993 * 109.47219 * 210.00057 * 11 2 1 33 33 H 1.08996 * 109.46023 * 301.35470 * 14 12 11 34 34 H 1.08998 * 109.45544 * 61.31345 * 14 12 11 35 35 H 1.08999 * 109.49820 * 58.58685 * 15 14 12 36 36 H 1.08995 * 109.49657 * 178.65015 * 15 14 12 37 37 H 1.09001 * 109.74218 * 295.11996 * 16 15 14 38 38 H 1.09005 * 109.66518 * 174.55236 * 16 15 14 39 39 H 1.08998 * 112.52858 * 50.18275 * 20 18 17 40 40 H 1.09000 * 113.14373 * 263.40307 * 21 20 18 41 41 H 1.08999 * 113.15326 * 32.84521 * 21 20 18 42 42 H 1.08997 * 113.15500 * 327.11307 * 25 20 18 43 43 H 1.09002 * 113.14510 * 96.55621 * 25 20 18 44 44 H 1.08998 * 109.58889 * 173.64659 * 26 17 16 45 45 H 1.09000 * 109.58735 * 294.07655 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1700 1.2203 -0.3522 5 6 1.5322 2.3439 0.4526 6 7 0.4082 2.2674 1.1332 7 14 2.2964 4.0106 0.0957 8 1 1.7710 4.5305 -1.1922 9 1 1.9536 4.9564 1.1881 10 1 3.7721 3.8699 0.0077 11 6 2.1975 -1.2687 -0.0006 12 6 2.4525 -1.7097 -1.4433 13 1 1.5065 -1.7531 -1.9830 14 6 3.3854 -0.7076 -2.1272 15 6 3.6142 -1.1305 -3.5801 16 6 4.2864 -2.5116 -3.6056 17 7 3.4623 -3.4468 -2.8279 18 6 3.0448 -4.6082 -3.3697 19 8 2.3692 -5.3742 -2.7157 20 6 3.4176 -4.9550 -4.7881 21 6 2.8616 -6.3063 -5.2431 22 16 2.7216 -5.6755 -6.9383 23 8 3.9620 -5.6823 -7.6315 24 8 1.4984 -6.0418 -7.5618 25 6 2.5448 -4.2501 -5.8290 26 6 3.1069 -3.0949 -1.4464 27 1 -0.3633 0.0919 1.0236 28 1 -0.3633 0.8404 -0.5914 29 1 -0.3633 -0.9324 -0.4322 30 1 -0.0235 3.0765 1.4491 31 1 1.6084 -2.0285 0.5129 32 1 3.1499 -1.1386 0.5133 33 1 2.9329 0.2837 -2.1044 34 1 4.3400 -0.6831 -1.6015 35 1 2.6573 -1.1793 -4.0997 36 1 4.2593 -0.4035 -4.0733 37 1 5.2803 -2.4455 -3.1630 38 1 4.3650 -2.8624 -4.6346 39 1 4.4852 -4.8444 -4.9782 40 1 3.5807 -7.1198 -5.1466 41 1 1.8978 -6.5463 -4.7942 42 1 1.5196 -4.0937 -5.4936 43 1 2.9981 -3.3405 -6.2231 44 1 2.4070 -3.8306 -1.0504 45 1 4.0066 -3.0753 -0.8314 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001490759816.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:28 Heat of formation + Delta-G solvation = -56.161512 kcal Electronic energy + Delta-G solvation = -27218.461810 eV Core-core repulsion = 23365.065549 eV Total energy + Delta-G solvation = -3853.396261 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 1.95 seconds Orbital eigenvalues (eV) -40.57941 -38.04588 -37.73175 -36.55834 -36.05456 -35.58037 -32.86615 -31.72670 -30.37471 -27.14948 -26.47542 -25.86143 -25.67359 -23.56871 -22.41203 -21.16032 -19.64329 -19.27793 -18.96927 -17.88594 -16.98292 -16.74677 -16.65414 -16.23416 -15.60561 -15.44010 -15.04092 -14.70748 -14.16302 -14.11190 -13.78242 -13.55887 -13.40298 -13.25966 -12.96947 -12.71088 -12.66647 -12.65961 -12.42109 -12.25392 -11.98432 -11.71059 -11.41836 -11.30142 -11.01529 -10.86087 -10.80285 -10.75646 -10.64040 -10.38331 -10.34169 -10.07332 -9.88009 -9.79081 -9.68283 -8.64375 -8.52930 -6.74921 -5.73424 -3.19066 -0.32329 1.48975 2.38767 2.82461 3.21536 3.35039 3.41148 3.43120 3.60142 3.69798 4.07890 4.40541 4.41989 4.47515 4.69114 4.80014 4.90965 5.01809 5.11023 5.23220 5.27703 5.36102 5.42300 5.46438 5.59601 5.65535 5.82571 5.87540 5.97150 6.06836 6.13893 6.31134 6.51992 6.57131 6.63943 6.76859 6.95926 6.96506 7.31068 7.37143 7.72028 7.79246 8.01176 8.38221 9.22382 9.86945 10.36347 11.31351 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.022669 B = 0.002710 C = 0.002631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.865428 B =10328.216733 C =10639.490066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.163 3.837 2 N -0.599 5.599 3 C -0.253 4.253 4 H 0.072 0.928 5 C 0.000 4.000 6 N -0.906 5.906 7 Si 0.901 3.099 8 H -0.289 1.289 9 H -0.292 1.292 10 H -0.280 1.280 11 C 0.158 3.842 12 C -0.118 4.118 13 H 0.065 0.935 14 C -0.112 4.112 15 C -0.135 4.135 16 C 0.103 3.897 17 N -0.600 5.600 18 C 0.537 3.463 19 O -0.536 6.536 20 C -0.096 4.096 21 C -0.578 4.578 22 S 2.416 3.584 23 O -0.912 6.912 24 O -0.920 6.920 25 C -0.593 4.593 26 C 0.115 3.885 27 H 0.030 0.970 28 H 0.039 0.961 29 H -0.003 1.003 30 H 0.252 0.748 31 H 0.036 0.964 32 H 0.047 0.953 33 H 0.093 0.907 34 H 0.054 0.946 35 H 0.064 0.936 36 H 0.070 0.930 37 H 0.071 0.929 38 H 0.079 0.921 39 H 0.134 0.866 40 H 0.129 0.871 41 H 0.155 0.845 42 H 0.150 0.850 43 H 0.134 0.866 44 H 0.088 0.912 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.073 -14.454 -14.691 22.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.322 5.322 3 C -0.382 4.382 4 H 0.090 0.910 5 C -0.198 4.198 6 N -0.551 5.551 7 Si 0.731 3.269 8 H -0.216 1.216 9 H -0.218 1.218 10 H -0.205 1.205 11 C 0.030 3.970 12 C -0.140 4.140 13 H 0.084 0.916 14 C -0.149 4.149 15 C -0.173 4.173 16 C -0.020 4.020 17 N -0.333 5.333 18 C 0.322 3.678 19 O -0.413 6.413 20 C -0.119 4.119 21 C -0.707 4.707 22 S 2.596 3.404 23 O -0.909 6.909 24 O -0.917 6.917 25 C -0.721 4.721 26 C -0.007 4.007 27 H 0.048 0.952 28 H 0.058 0.942 29 H 0.015 0.985 30 H 0.062 0.938 31 H 0.055 0.945 32 H 0.066 0.934 33 H 0.112 0.888 34 H 0.073 0.927 35 H 0.083 0.917 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.097 0.903 39 H 0.152 0.848 40 H 0.147 0.853 41 H 0.173 0.827 42 H 0.168 0.832 43 H 0.152 0.848 44 H 0.107 0.893 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 7.600 -15.036 -15.409 22.832 hybrid contribution 0.440 1.496 1.006 1.856 sum 8.039 -13.541 -14.403 21.341 Atomic orbital electron populations 1.20772 0.82741 0.95280 0.99394 1.43854 1.01726 1.00589 1.86015 1.19216 0.97783 0.85311 1.35936 0.91028 1.25016 0.97987 0.98434 0.98378 1.70081 1.19585 1.26966 1.38503 0.86311 0.78670 0.84430 0.77472 1.21592 1.21829 1.20506 1.20664 0.96173 0.88597 0.91590 1.22234 0.98337 0.92171 1.01275 0.91636 1.21616 0.99258 1.01412 0.92664 1.22040 1.00820 0.95018 0.99466 1.21964 0.94222 0.90195 0.95588 1.48109 1.51642 1.18532 1.14972 1.19633 0.79809 0.81274 0.87074 1.90704 1.38705 1.49447 1.62404 1.21575 1.01424 0.93809 0.95088 1.30867 1.11587 1.04568 1.23659 1.08290 0.74868 0.80383 0.76825 1.93728 1.42606 1.83858 1.70721 1.93663 1.43827 1.79056 1.75173 1.31025 1.09121 1.19582 1.12375 1.21802 1.00316 0.97976 0.80611 0.95178 0.94198 0.98492 0.93802 0.94536 0.93412 0.88815 0.92707 0.91749 0.91094 0.91075 0.90318 0.84828 0.85252 0.82675 0.83156 0.84805 0.89327 0.91544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 32. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.96 8.98 59.84 0.54 4.50 16 2 N -0.60 -14.38 2.80 -181.12 -0.51 -14.88 16 3 C -0.25 -6.56 8.17 -15.06 -0.12 -6.68 16 4 H 0.07 1.78 6.71 -52.49 -0.35 1.43 16 5 C 0.00 0.01 5.08 -17.43 -0.09 -0.08 16 6 N -0.91 -26.07 10.72 55.49 0.59 -25.47 16 7 Si 0.90 21.23 29.58 -169.99 -5.03 16.20 16 8 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 9 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 10 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 11 C 0.16 3.06 5.15 -4.04 -0.02 3.04 16 12 C -0.12 -1.90 2.54 -90.49 -0.23 -2.13 16 13 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 14 C -0.11 -1.70 4.44 -26.69 -0.12 -1.82 16 15 C -0.14 -1.53 6.10 -26.39 -0.16 -1.69 16 16 C 0.10 0.97 6.31 -3.49 -0.02 0.94 16 17 N -0.60 -7.14 2.97 -172.50 -0.51 -7.65 16 18 C 0.54 6.46 7.20 -10.98 -0.08 6.38 16 19 O -0.54 -8.39 15.36 5.55 0.09 -8.30 16 20 C -0.10 -0.72 2.47 -91.73 -0.23 -0.95 16 21 C -0.58 -3.66 7.18 37.18 0.27 -3.40 16 22 S 2.42 14.31 7.55 -107.50 -0.81 13.49 16 23 O -0.91 -7.74 18.18 -57.30 -1.04 -8.78 16 24 O -0.92 -8.89 18.18 -57.30 -1.04 -9.93 16 25 C -0.59 -3.46 7.05 37.18 0.26 -3.19 16 26 C 0.12 1.59 5.71 -3.71 -0.02 1.57 16 27 H 0.03 0.80 7.36 -51.93 -0.38 0.41 16 28 H 0.04 1.04 7.31 -51.93 -0.38 0.66 16 29 H 0.00 -0.08 8.03 -51.93 -0.42 -0.49 16 30 H 0.25 7.05 8.31 -40.82 -0.34 6.72 16 31 H 0.04 0.69 8.07 -51.93 -0.42 0.27 16 32 H 0.05 0.92 8.04 -51.93 -0.42 0.51 16 33 H 0.09 1.75 5.95 -51.93 -0.31 1.44 16 34 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.08 0.52 5.10 -51.93 -0.26 0.25 16 39 H 0.13 0.67 7.52 -51.93 -0.39 0.28 16 40 H 0.13 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.16 1.15 7.57 -51.93 -0.39 0.75 16 42 H 0.15 0.95 8.11 -51.93 -0.42 0.53 16 43 H 0.13 0.51 7.57 -51.93 -0.39 0.11 16 44 H 0.09 1.34 7.01 -51.93 -0.36 0.98 16 45 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 362.68 15.07 5.47 5.47 Total: -1.00 -36.16 362.68 -9.82 -45.98 By element: Atomic # 1 Polarization: 4.38 SS G_CDS: -7.00 Total: -2.61 kcal Atomic # 6 Polarization: -3.47 SS G_CDS: -0.02 Total: -3.49 kcal Atomic # 7 Polarization: -47.59 SS G_CDS: -0.42 Total: -48.01 kcal Atomic # 8 Polarization: -25.02 SS G_CDS: -2.00 Total: -27.02 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.03 Total: 16.20 kcal Atomic # 16 Polarization: 14.31 SS G_CDS: -0.81 Total: 13.49 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -36.16 -9.82 -45.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490759816.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.185 kcal (2) G-P(sol) polarization free energy of solvation -36.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.96 seconds