Wall clock time and date at job start Tue Mar 31 2020 05:01:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46497 * 109.47034 * 2 1 4 4 C 1.46499 * 120.00612 * 89.99471 * 3 2 1 5 5 C 1.50701 * 109.47260 * 270.00459 * 4 3 2 6 6 H 1.08002 * 119.99761 * 359.97438 * 5 4 3 7 7 C 1.37871 * 119.99694 * 180.27562 * 5 4 3 8 8 N 1.31514 * 120.00482 * 359.71466 * 7 5 4 9 9 Si 1.86801 * 119.99746 * 179.72062 * 7 5 4 10 10 H 1.48494 * 109.47230 * 359.97438 * 9 7 5 11 11 H 1.48505 * 109.47301 * 119.99669 * 9 7 5 12 12 H 1.48498 * 109.47430 * 239.99516 * 9 7 5 13 13 C 1.34779 * 119.99637 * 269.99986 * 3 2 1 14 14 O 1.21287 * 120.00127 * 180.02562 * 13 3 2 15 15 C 1.50703 * 120.00320 * 359.97438 * 13 3 2 16 16 C 1.52998 * 109.47219 * 180.02562 * 15 13 3 17 17 H 1.08994 * 109.51386 * 53.65592 * 16 15 13 18 18 C 1.55866 * 109.51343 * 293.54406 * 16 15 13 19 19 S 1.84495 * 104.85850 * 248.32155 * 18 16 15 20 20 O 1.42103 * 109.79643 * 133.47696 * 19 18 16 21 21 O 1.42106 * 109.79937 * 267.78012 * 19 18 16 22 22 C 1.81541 * 94.33109 * 20.62636 * 19 18 16 23 23 H 1.09006 * 112.90109 * 80.72903 * 22 19 18 24 24 C 1.51867 * 118.48246 * 215.95466 * 22 19 18 25 25 N 1.49983 * 102.66263 * 148.05897 * 24 22 19 26 26 C 1.49752 * 107.92325 * 334.26817 * 25 24 22 27 27 C 1.48385 * 109.51641 * 173.72626 * 16 15 13 28 28 H 1.08992 * 105.93332 * 190.10691 * 27 16 15 29 29 H 1.09002 * 109.46479 * 60.00355 * 1 2 3 30 30 H 1.08998 * 109.47319 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47466 * 300.00465 * 1 2 3 32 32 H 1.08999 * 109.46965 * 239.99665 * 2 1 3 33 33 H 1.08995 * 109.46771 * 119.99395 * 2 1 3 34 34 H 1.09000 * 109.47197 * 149.99465 * 4 3 2 35 35 H 1.09007 * 109.46342 * 30.00037 * 4 3 2 36 36 H 0.96995 * 120.00207 * 179.97438 * 8 7 5 37 37 H 1.09003 * 109.46863 * 300.00852 * 15 13 3 38 38 H 1.09001 * 109.46577 * 60.00116 * 15 13 3 39 39 H 1.08990 * 110.36464 * 7.17224 * 18 16 15 40 40 H 1.09003 * 110.35640 * 129.37232 * 18 16 15 41 41 H 1.09001 * 110.77198 * 266.34567 * 24 22 19 42 42 H 1.08992 * 110.77658 * 29.76272 * 24 22 19 43 43 H 1.00903 * 110.99759 * 212.42939 * 25 24 22 44 44 H 1.08997 * 110.44787 * 113.06481 * 26 25 24 45 45 H 1.08997 * 110.44715 * 235.61158 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0720 1.2686 5 6 1.0066 2.7823 1.7036 6 1 0.1158 2.7253 1.0956 7 6 0.9966 3.5101 2.8745 8 7 2.0814 3.5798 3.6148 9 14 -0.5578 4.3971 3.4097 10 1 -1.6304 4.1631 2.4099 11 1 -0.9922 3.8803 4.7325 12 1 -0.2864 5.8534 3.5122 13 6 2.2430 2.0165 -1.1673 14 8 2.6477 3.1598 -1.1674 15 6 1.9924 1.3059 -2.4724 16 6 2.3242 2.2430 -3.6353 17 1 3.3375 2.6266 -3.5160 18 6 1.3159 3.4315 -3.6503 19 16 0.3039 3.1741 -5.1713 20 8 -1.0743 3.3367 -4.8656 21 8 0.8834 3.8797 -6.2602 22 6 0.7005 1.4074 -5.3025 23 1 0.0975 0.7869 -4.6395 24 6 0.8691 0.8038 -6.6859 25 7 1.8949 -0.2658 -6.4551 26 6 2.7119 0.1286 -5.2637 27 6 2.2240 1.4993 -4.9154 28 1 2.6434 2.1567 -5.6770 29 1 -0.3632 0.5138 -0.8901 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5137 0.8900 34 1 3.0644 2.7986 1.1383 35 1 2.5505 1.3453 2.0283 36 1 2.0745 4.0921 4.4384 37 1 2.6229 0.4185 -2.5298 38 1 0.9445 1.0113 -2.5302 39 1 0.6824 3.4026 -2.7639 40 1 1.8492 4.3806 -3.7038 41 1 -0.0683 0.3713 -7.0358 42 1 1.2390 1.5487 -7.3903 43 1 2.4784 -0.3887 -7.2690 44 1 2.5363 -0.5595 -4.4368 45 1 3.7709 0.1551 -5.5200 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001577711255.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:01:01 Heat of formation + Delta-G solvation = -81.917577 kcal Electronic energy + Delta-G solvation = -27933.796402 eV Core-core repulsion = 24079.283275 eV Total energy + Delta-G solvation = -3854.513127 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.49897 -38.96127 -37.18132 -36.19198 -35.64687 -34.82973 -32.78648 -30.29239 -30.01899 -29.10086 -28.57763 -26.73958 -23.98172 -22.81048 -22.59744 -22.32197 -19.86040 -19.09671 -18.54669 -17.56052 -17.10982 -16.56766 -16.18469 -15.91469 -15.72680 -15.26994 -15.14503 -14.81895 -14.40276 -14.11317 -13.84038 -13.65184 -13.31577 -13.20548 -12.89970 -12.64800 -12.39810 -12.33981 -12.23351 -12.21261 -12.16167 -11.88122 -11.56819 -11.53434 -11.47305 -11.23629 -10.98982 -10.87971 -10.79400 -10.72964 -10.52813 -10.23888 -10.08300 -9.60724 -8.98620 -8.94189 -8.46785 -7.73243 -6.07986 -4.12234 -0.15788 2.31296 3.04426 3.27254 3.30145 3.35958 3.40420 3.59514 3.70222 3.80634 3.88237 3.99945 4.32947 4.41379 4.53120 4.68449 4.76761 4.82035 4.97525 5.11342 5.21316 5.26354 5.27483 5.31855 5.36038 5.40042 5.46579 5.54711 5.69653 5.71364 5.77215 5.89602 5.94420 6.09367 6.12635 6.26398 6.72509 6.84500 7.00544 7.38803 7.49802 7.88450 8.19603 8.35338 8.85759 9.02038 9.53115 11.00205 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.016266 B = 0.003796 C = 0.003445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1720.995396 B = 7374.834546 C = 8125.472801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.110 3.890 3 N -0.597 5.597 4 C 0.245 3.755 5 C -0.523 4.523 6 H 0.059 0.941 7 C 0.061 3.939 8 N -0.895 5.895 9 Si 0.894 3.106 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.283 1.283 13 C 0.502 3.498 14 O -0.539 6.539 15 C -0.143 4.143 16 C -0.038 4.038 17 H 0.110 0.890 18 C -0.547 4.547 19 S 2.387 3.613 20 O -0.934 6.934 21 O -0.935 6.935 22 C -0.590 4.590 23 H 0.160 0.840 24 C 0.079 3.921 25 N -0.675 5.675 26 C 0.076 3.924 27 C -0.120 4.120 28 H 0.078 0.922 29 H 0.048 0.952 30 H 0.054 0.946 31 H 0.076 0.924 32 H 0.062 0.938 33 H 0.075 0.925 34 H 0.043 0.957 35 H 0.031 0.969 36 H 0.262 0.738 37 H 0.097 0.903 38 H 0.091 0.909 39 H 0.144 0.856 40 H 0.142 0.858 41 H 0.095 0.905 42 H 0.064 0.936 43 H 0.342 0.658 44 H 0.089 0.911 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.752 -10.022 -18.681 21.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.014 4.014 3 N -0.329 5.329 4 C 0.126 3.874 5 C -0.562 4.562 6 H 0.078 0.922 7 C -0.141 4.141 8 N -0.534 5.534 9 Si 0.722 3.278 10 H -0.197 1.197 11 H -0.210 1.210 12 H -0.209 1.209 13 C 0.288 3.712 14 O -0.417 6.417 15 C -0.183 4.183 16 C -0.059 4.059 17 H 0.128 0.872 18 C -0.679 4.679 19 S 2.571 3.429 20 O -0.931 6.931 21 O -0.932 6.932 22 C -0.699 4.699 23 H 0.178 0.822 24 C -0.050 4.050 25 N -0.304 5.304 26 C -0.053 4.053 27 C -0.141 4.141 28 H 0.096 0.904 29 H 0.067 0.933 30 H 0.073 0.927 31 H 0.095 0.905 32 H 0.081 0.919 33 H 0.093 0.907 34 H 0.061 0.939 35 H 0.049 0.951 36 H 0.072 0.928 37 H 0.115 0.885 38 H 0.109 0.891 39 H 0.162 0.838 40 H 0.160 0.840 41 H 0.113 0.887 42 H 0.082 0.918 43 H 0.157 0.843 44 H 0.107 0.893 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 0.010 -9.170 -18.746 20.869 hybrid contribution 0.093 0.680 0.752 1.018 sum 0.103 -8.490 -17.994 19.896 Atomic orbital electron populations 1.22245 0.96292 1.01033 1.03422 1.21409 0.94595 0.83708 1.01710 1.48293 1.63503 1.13217 1.07847 1.19301 0.97553 0.92466 0.78082 1.21470 0.97498 1.30865 1.06339 0.92240 1.24929 0.96397 0.96285 0.96481 1.69934 1.27450 1.41539 1.14478 0.86497 0.83238 0.79649 0.78387 1.19735 1.20979 1.20906 1.20228 0.78923 0.86935 0.85110 1.90678 1.46283 1.17517 1.87184 1.21947 1.03841 0.99415 0.93075 1.19999 1.01504 0.92125 0.92259 0.87231 1.30900 1.11348 1.06835 1.18789 1.09054 0.76585 0.78223 0.79041 1.93614 1.30036 1.84595 1.84855 1.93610 1.79586 1.69162 1.50821 1.31757 1.06655 1.24652 1.06848 0.82234 1.22081 0.97823 0.93362 0.91731 1.63378 1.16283 1.43419 1.07336 1.21670 0.96242 0.92768 0.94622 1.21745 0.92267 1.00948 0.99110 0.90395 0.93280 0.92715 0.90497 0.91942 0.90697 0.93912 0.95134 0.92793 0.88515 0.89052 0.83759 0.83987 0.88653 0.91754 0.84319 0.89299 0.91086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.44 10.24 37.16 0.38 -2.06 16 2 C 0.11 1.60 5.98 -4.04 -0.02 1.58 16 3 N -0.60 -11.54 2.46 -175.05 -0.43 -11.97 16 4 C 0.25 6.09 5.20 -5.19 -0.03 6.06 16 5 C -0.52 -14.19 8.92 -34.44 -0.31 -14.50 16 6 H 0.06 1.61 7.42 -52.49 -0.39 1.22 16 7 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 8 N -0.89 -26.07 13.29 55.43 0.74 -25.34 16 9 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 10 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 12 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 13 C 0.50 9.13 7.12 -10.98 -0.08 9.05 16 14 O -0.54 -11.98 14.50 5.55 0.08 -11.90 16 15 C -0.14 -1.69 3.26 -27.88 -0.09 -1.78 16 16 C -0.04 -0.41 2.26 -91.34 -0.21 -0.62 16 17 H 0.11 1.23 7.91 -51.93 -0.41 0.82 16 18 C -0.55 -6.53 6.08 38.69 0.24 -6.29 16 19 S 2.39 26.94 5.73 -107.50 -0.62 26.32 16 20 O -0.93 -13.98 18.16 -57.67 -1.05 -15.03 16 21 O -0.93 -12.56 17.30 -57.67 -1.00 -13.56 16 22 C -0.59 -5.05 3.69 -24.87 -0.09 -5.14 16 23 H 0.16 1.22 7.76 -51.93 -0.40 0.82 16 24 C 0.08 0.61 7.10 -2.67 -0.02 0.59 16 25 N -0.67 -4.86 7.55 -111.61 -0.84 -5.70 16 26 C 0.08 0.53 7.23 -3.91 -0.03 0.50 16 27 C -0.12 -0.99 1.85 -92.11 -0.17 -1.16 16 28 H 0.08 0.62 7.06 -51.93 -0.37 0.25 16 29 H 0.05 0.67 7.22 -51.93 -0.38 0.29 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.08 1.34 7.26 -51.93 -0.38 0.97 16 32 H 0.06 0.69 6.44 -51.93 -0.33 0.35 16 33 H 0.07 1.09 7.89 -51.93 -0.41 0.68 16 34 H 0.04 1.21 7.42 -51.93 -0.39 0.82 16 35 H 0.03 0.78 7.89 -51.93 -0.41 0.37 16 36 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 37 H 0.10 0.90 6.46 -51.93 -0.34 0.57 16 38 H 0.09 0.96 6.67 -51.93 -0.35 0.61 16 39 H 0.14 1.97 7.11 -51.93 -0.37 1.60 16 40 H 0.14 1.63 8.14 -51.93 -0.42 1.20 16 41 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.06 0.47 7.72 -51.93 -0.40 0.07 16 43 H 0.34 1.86 8.94 -39.29 -0.35 1.51 16 44 H 0.09 0.61 7.23 -51.93 -0.38 0.24 16 45 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 LS Contribution 363.52 15.07 5.48 5.48 Total: -1.00 -36.43 363.52 -10.05 -46.48 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: -6.87 Total: 0.84 kcal Atomic # 6 Polarization: -11.64 SS G_CDS: -0.52 Total: -12.16 kcal Atomic # 7 Polarization: -42.47 SS G_CDS: -0.54 Total: -43.01 kcal Atomic # 8 Polarization: -38.52 SS G_CDS: -1.96 Total: -40.49 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Atomic # 16 Polarization: 26.94 SS G_CDS: -0.62 Total: 26.32 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -36.43 -10.05 -46.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001577711255.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.441 kcal (2) G-P(sol) polarization free energy of solvation -36.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds