Wall clock time and date at job start Tue Mar 31 2020 05:01:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46499 * 109.46840 * 2 1 4 4 C 1.46502 * 119.99658 * 90.00442 * 3 2 1 5 5 C 1.50701 * 109.47310 * 89.99973 * 4 3 2 6 6 H 1.07997 * 119.99940 * 359.97438 * 5 4 3 7 7 C 1.37877 * 120.00037 * 179.97438 * 5 4 3 8 8 N 1.31516 * 119.99860 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 119.99877 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.46889 * 90.00336 * 9 7 5 11 11 H 1.48502 * 109.47240 * 209.99902 * 9 7 5 12 12 H 1.48500 * 109.47486 * 330.00239 * 9 7 5 13 13 C 1.34775 * 120.00337 * 270.00307 * 3 2 1 14 14 O 1.21282 * 120.00258 * 180.02562 * 13 3 2 15 15 C 1.50701 * 119.99714 * 359.97438 * 13 3 2 16 16 C 1.53001 * 109.46723 * 180.02562 * 15 13 3 17 17 H 1.08996 * 108.97144 * 52.39024 * 16 15 13 18 18 C 1.52978 * 108.99877 * 293.54620 * 16 15 13 19 19 S 1.82534 * 105.80851 * 218.20262 * 18 16 15 20 20 O 1.42101 * 109.22971 * 115.96544 * 19 18 16 21 21 O 1.42099 * 109.22692 * 248.70081 * 19 18 16 22 22 C 1.81927 * 97.81822 * 2.38644 * 19 18 16 23 23 H 1.08996 * 112.28802 * 139.34629 * 22 19 18 24 24 C 1.54325 * 110.71472 * 265.80550 * 22 19 18 25 25 N 1.48821 * 102.25751 * 153.54384 * 24 22 19 26 26 C 1.47822 * 106.04131 * 320.33546 * 25 24 22 27 27 C 1.53133 * 108.99147 * 171.09999 * 16 15 13 28 28 H 1.09004 * 111.85441 * 30.55511 * 27 16 15 29 29 H 1.09001 * 109.47194 * 299.99493 * 1 2 3 30 30 H 1.08992 * 109.47399 * 59.99666 * 1 2 3 31 31 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47398 * 120.00326 * 2 1 3 33 33 H 1.09001 * 109.47194 * 240.00507 * 2 1 3 34 34 H 1.08998 * 109.46888 * 209.99779 * 4 3 2 35 35 H 1.08994 * 109.47490 * 329.99842 * 4 3 2 36 36 H 0.97000 * 119.99433 * 179.97438 * 8 7 5 37 37 H 1.08992 * 109.47745 * 300.00370 * 15 13 3 38 38 H 1.09002 * 109.46636 * 60.00675 * 15 13 3 39 39 H 1.09001 * 110.18409 * 337.28887 * 18 16 15 40 40 H 1.09002 * 110.17955 * 99.11882 * 18 16 15 41 41 H 1.09003 * 110.84179 * 271.73671 * 24 22 19 42 42 H 1.08996 * 110.84348 * 35.35242 * 24 22 19 43 43 H 1.00895 * 110.99587 * 199.68369 * 25 24 22 44 44 H 1.09002 * 109.87472 * 141.38235 * 26 25 24 45 45 H 1.09004 * 109.87396 * 262.50005 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 1.2688 5 6 3.6858 1.8350 1.7038 6 1 4.3426 1.2303 1.0961 7 6 4.1494 2.3904 2.8775 8 7 3.3496 3.1272 3.6172 9 14 5.9134 2.0963 3.4170 10 1 6.7856 3.1611 2.8594 11 1 5.9883 2.1213 4.8999 12 1 6.3689 0.7730 2.9206 13 6 2.2428 2.0167 -1.1671 14 8 2.6475 3.1600 -1.1671 15 6 1.9922 1.3061 -2.4723 16 6 2.3240 2.2434 -3.6351 17 1 3.3299 2.6392 -3.4953 18 6 1.3281 3.4046 -3.6386 19 16 0.9692 3.7466 -5.3953 20 8 -0.4029 3.4815 -5.6529 21 8 1.5231 5.0063 -5.7495 22 6 1.9818 2.4190 -6.1178 23 1 1.4865 1.9317 -6.9575 24 6 3.3852 2.9431 -6.4883 25 7 4.2144 1.7099 -6.4081 26 6 3.7242 0.9641 -5.2298 27 6 2.2813 1.4488 -4.9435 28 1 1.5625 0.6306 -4.8980 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5139 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 2.0955 3.1410 1.1385 35 1 1.5818 1.6876 2.0284 36 1 3.6757 3.5176 4.4431 37 1 2.6226 0.4189 -2.5299 38 1 0.9443 1.0116 -2.5301 39 1 0.4148 3.1183 -3.1170 40 1 1.7716 4.2818 -3.1677 41 1 3.3926 3.3506 -7.4993 42 1 3.7246 3.6863 -5.7669 43 1 5.1925 1.9376 -6.3108 44 1 3.7204 -0.1049 -5.4431 45 1 4.3615 1.1697 -4.3697 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001577711256.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:01:04 Heat of formation + Delta-G solvation = -99.803657 kcal Electronic energy + Delta-G solvation = -27665.578651 eV Core-core repulsion = 23810.289925 eV Total energy + Delta-G solvation = -3855.288726 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.20553 -38.86197 -37.17250 -36.15136 -35.59642 -34.66174 -32.85976 -30.55719 -30.16433 -29.06501 -28.71219 -26.68251 -23.58188 -23.09252 -22.29453 -21.99292 -20.54623 -19.04666 -18.45608 -17.37732 -17.02457 -16.55146 -16.23483 -15.87287 -15.81798 -15.55005 -15.06199 -14.84186 -14.42149 -14.16322 -13.74249 -13.46336 -13.40141 -13.17553 -12.97737 -12.66516 -12.52564 -12.26419 -12.14914 -12.12097 -12.05314 -11.94830 -11.72144 -11.57701 -11.40764 -11.27953 -11.03927 -10.98327 -10.80127 -10.71689 -10.60426 -10.38183 -10.19555 -9.71124 -9.00680 -8.89400 -8.50061 -7.76044 -6.11073 -4.16214 -0.11061 2.38286 3.25523 3.27056 3.29104 3.32259 3.35179 3.59960 3.75617 3.85978 3.98741 4.26351 4.36612 4.40600 4.43319 4.53896 4.80644 4.84973 5.03521 5.07816 5.17430 5.22827 5.24300 5.33302 5.34831 5.37634 5.47496 5.55061 5.58402 5.61527 5.69889 5.90259 5.93301 5.98438 6.15268 6.26799 6.40311 6.91192 6.98202 7.36489 7.45523 7.84788 8.15966 8.32659 8.81820 8.98698 9.49213 10.97009 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.015305 B = 0.003449 C = 0.003303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.061360 B = 8115.652964 C = 8473.830955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.105 3.895 3 N -0.596 5.596 4 C 0.246 3.754 5 C -0.527 4.527 6 H 0.056 0.944 7 C 0.062 3.938 8 N -0.894 5.894 9 Si 0.898 3.102 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.275 1.275 13 C 0.503 3.497 14 O -0.540 6.540 15 C -0.135 4.135 16 C -0.066 4.066 17 H 0.101 0.899 18 C -0.573 4.573 19 S 2.396 3.604 20 O -0.941 6.941 21 O -0.936 6.936 22 C -0.564 4.564 23 H 0.155 0.845 24 C 0.066 3.934 25 N -0.667 5.667 26 C 0.047 3.953 27 C -0.083 4.083 28 H 0.113 0.887 29 H 0.061 0.939 30 H 0.051 0.949 31 H 0.060 0.940 32 H 0.082 0.918 33 H 0.065 0.935 34 H 0.043 0.957 35 H 0.031 0.969 36 H 0.264 0.736 37 H 0.095 0.905 38 H 0.094 0.906 39 H 0.137 0.863 40 H 0.154 0.846 41 H 0.098 0.902 42 H 0.063 0.937 43 H 0.344 0.656 44 H 0.085 0.915 45 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.509 -7.281 -17.851 19.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.019 4.019 3 N -0.327 5.327 4 C 0.127 3.873 5 C -0.566 4.566 6 H 0.074 0.926 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.725 3.275 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.200 1.200 13 C 0.289 3.711 14 O -0.418 6.418 15 C -0.176 4.176 16 C -0.086 4.086 17 H 0.119 0.881 18 C -0.703 4.703 19 S 2.580 3.420 20 O -0.938 6.938 21 O -0.933 6.933 22 C -0.673 4.673 23 H 0.173 0.827 24 C -0.064 4.064 25 N -0.297 5.297 26 C -0.083 4.083 27 C -0.103 4.103 28 H 0.131 0.869 29 H 0.080 0.920 30 H 0.070 0.930 31 H 0.079 0.921 32 H 0.101 0.899 33 H 0.083 0.917 34 H 0.061 0.939 35 H 0.049 0.951 36 H 0.073 0.927 37 H 0.114 0.886 38 H 0.112 0.888 39 H 0.155 0.845 40 H 0.172 0.828 41 H 0.116 0.884 42 H 0.081 0.919 43 H 0.160 0.840 44 H 0.104 0.896 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.221 -6.258 -18.590 20.064 hybrid contribution 1.704 -0.358 1.678 2.418 sum -2.517 -6.616 -16.911 18.333 Atomic orbital electron populations 1.22231 0.96745 1.01525 1.02366 1.21435 0.93534 0.84208 1.02731 1.48268 1.63443 1.13229 1.07809 1.19272 0.96280 0.93622 0.78151 1.21403 0.96873 1.31999 1.06335 0.92553 1.24934 0.97838 0.94904 0.96382 1.69930 1.35646 1.33308 1.14383 0.86510 0.84726 0.78585 0.77645 1.20564 1.21105 1.19956 1.20200 0.78743 0.87027 0.85103 1.90657 1.45929 1.18051 1.87169 1.21896 1.03705 0.99183 0.92805 1.21185 1.00802 0.93067 0.93554 0.88051 1.30353 1.09028 1.08934 1.21995 1.08858 0.76123 0.76923 0.80045 1.93597 1.30329 1.85919 1.83988 1.93604 1.80007 1.37709 1.81998 1.31220 1.11102 1.16374 1.08629 0.82682 1.22660 0.88465 0.92264 1.03035 1.63145 1.07584 1.18558 1.40369 1.22947 0.93198 0.99786 0.92382 1.22637 0.99562 0.98038 0.90085 0.86862 0.92017 0.93040 0.92088 0.89945 0.91673 0.93909 0.95071 0.92669 0.88644 0.88815 0.84501 0.82814 0.88390 0.91902 0.84006 0.89647 0.92320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.05 10.24 37.16 0.38 -1.67 16 2 C 0.11 1.51 5.93 -4.04 -0.02 1.48 16 3 N -0.60 -11.47 2.46 -175.06 -0.43 -11.90 16 4 C 0.25 6.12 5.16 -5.19 -0.03 6.10 16 5 C -0.53 -14.39 9.39 -34.44 -0.32 -14.71 16 6 H 0.06 1.53 7.81 -52.49 -0.41 1.12 16 7 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 8 N -0.89 -26.02 13.29 55.43 0.74 -25.28 16 9 Si 0.90 21.31 29.54 -169.99 -5.02 16.29 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 12 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 13 C 0.50 9.10 7.42 -10.99 -0.08 9.02 16 14 O -0.54 -11.99 14.19 5.56 0.08 -11.91 16 15 C -0.14 -1.56 3.42 -27.88 -0.10 -1.65 16 16 C -0.07 -0.69 1.56 -90.56 -0.14 -0.83 16 17 H 0.10 1.19 6.90 -51.93 -0.36 0.83 16 18 C -0.57 -6.44 5.71 37.15 0.21 -6.23 16 19 S 2.40 25.66 5.85 -107.50 -0.63 25.03 16 20 O -0.94 -12.80 18.13 -57.74 -1.05 -13.85 16 21 O -0.94 -12.95 17.21 -57.74 -0.99 -13.95 16 22 C -0.56 -4.62 4.09 -24.85 -0.10 -4.73 16 23 H 0.16 1.05 8.14 -51.93 -0.42 0.63 16 24 C 0.07 0.56 6.47 -2.06 -0.01 0.55 16 25 N -0.67 -5.46 7.48 -109.75 -0.82 -6.28 16 26 C 0.05 0.37 7.02 -2.32 -0.02 0.35 16 27 C -0.08 -0.65 3.18 -88.37 -0.28 -0.93 16 28 H 0.11 0.67 7.94 -51.93 -0.41 0.26 16 29 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.05 0.57 7.22 -51.93 -0.38 0.20 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.08 1.27 8.07 -51.93 -0.42 0.85 16 33 H 0.06 0.73 6.44 -51.93 -0.33 0.40 16 34 H 0.04 1.21 7.42 -51.93 -0.39 0.83 16 35 H 0.03 0.79 8.07 -51.93 -0.42 0.37 16 36 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 37 H 0.10 0.91 7.38 -51.93 -0.38 0.53 16 38 H 0.09 0.87 7.02 -51.93 -0.36 0.51 16 39 H 0.14 1.45 7.65 -51.93 -0.40 1.05 16 40 H 0.15 1.98 7.54 -51.93 -0.39 1.59 16 41 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.06 0.55 7.75 -51.93 -0.40 0.15 16 43 H 0.34 2.39 8.92 -39.29 -0.35 2.04 16 44 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 45 H 0.06 0.48 7.13 -51.93 -0.37 0.11 16 LS Contribution 366.79 15.07 5.53 5.53 Total: -1.00 -36.73 366.79 -10.23 -46.96 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: -7.02 Total: 1.01 kcal Atomic # 6 Polarization: -11.04 SS G_CDS: -0.61 Total: -11.64 kcal Atomic # 7 Polarization: -42.94 SS G_CDS: -0.51 Total: -43.46 kcal Atomic # 8 Polarization: -37.75 SS G_CDS: -1.96 Total: -39.71 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Atomic # 16 Polarization: 25.66 SS G_CDS: -0.63 Total: 25.03 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -36.73 -10.23 -46.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001577711256.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.848 kcal (2) G-P(sol) polarization free energy of solvation -36.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds